data_3M7P # _model_server_result.job_id xAdNMQkB3CjqjLekvfg-KQ _model_server_result.datetime_utc '2025-03-05 18:40:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m7p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":189}' # _entry.id 3M7P # _exptl.entry_id 3M7P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 546.646 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DODECAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3M7P _cell.length_a 124.789 _cell.length_b 124.789 _cell.length_c 60.649 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M7P _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 L N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 308 1_555 A SG CYS 39 A CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? disulf ? disulf2 A SG CYS 37 A CYS 333 1_555 A SG CYS 46 A CYS 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? disulf ? disulf3 A SG CYS 64 A CYS 360 1_555 A SG CYS 90 A CYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? disulf ? disulf4 A SG CYS 78 A CYS 374 1_555 A SG CYS 105 A CYS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? disulf ? disulf5 A SG CYS 124 A CYS 420 1_555 A SG CYS 150 A CYS 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? disulf ? disulf6 A SG CYS 138 A CYS 434 1_555 A SG CYS 165 A CYS 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? disulf ? disulf7 A SG CYS 174 A CYS 470 1_555 A SG CYS 202 A CYS 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? disulf ? disulf8 A SG CYS 200 A CYS 496 1_555 A SG CYS 212 A CYS 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? disulf ? disulf9 A SG CYS 247 A CYS 543 1_555 A SG CYS 259 A CYS 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? disulf ? disulf10 A SG CYS 265 A CYS 561 1_555 A SG CYS 293 A CYS 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? disulf ? disulf11 A SG CYS 291 A CYS 587 1_555 A SG CYS 303 A CYS 599 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? covale ? covale1 A ND2 ASN 134 A ASN 430 1_555 B C1 NAG . A NAG 1430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? covale ? covale2 A ND2 ASN 232 A ASN 528 1_555 C C1 NAG . A NAG 1528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? covale ? covale3 A ND2 ASN 246 A ASN 542 1_555 D C1 NAG . A NAG 1542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.488 ? metalc ? metalc1 N O HOH . A HOH 10 1_555 I ZN ZN . A ZN 958 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc2 N O HOH . A HOH 13 1_555 G ZN ZN . A ZN 956 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc3 N O HOH . A HOH 34 1_555 F ZN ZN . A ZN 954 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc4 N O HOH . A HOH 36 1_555 K ZN ZN . A ZN 955 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc5 N O HOH . A HOH 37 1_555 K ZN ZN . A ZN 955 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? metalc ? metalc6 N O HOH . A HOH 38 1_555 K ZN ZN . A ZN 955 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc7 N O HOH . A HOH 39 1_555 K ZN ZN . A ZN 955 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc8 N O HOH . A HOH 40 1_555 K ZN ZN . A ZN 955 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc9 A ND1 HIS 3 A HIS 299 1_555 I ZN ZN . A ZN 958 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc10 A ND1 HIS 11 A HIS 307 1_555 I ZN ZN . A ZN 958 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc11 A NE2 HIS 87 A HIS 383 1_555 G ZN ZN . A ZN 956 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc12 A NE2 HIS 170 A HIS 466 1_555 H ZN ZN . A ZN 957 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? metalc ? metalc13 A OE1 GLU 171 A GLU 467 1_555 E ZN ZN . A ZN 953 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc14 A OE2 GLU 171 A GLU 467 1_555 E ZN ZN . A ZN 953 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc15 A OE1 GLU 172 A GLU 468 1_555 H ZN ZN . A ZN 957 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc16 A OE2 GLU 178 A GLU 474 1_555 J ZN ZN . A ZN 959 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc17 A NE2 HIS 192 A HIS 488 1_555 J ZN ZN . A ZN 959 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc18 A OD1 ASP 233 A ASP 529 1_555 E ZN ZN . A ZN 953 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc19 A ND1 HIS 236 A HIS 532 1_555 E ZN ZN . A ZN 953 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc20 A NE2 HIS 239 A HIS 535 1_555 F ZN ZN . A ZN 954 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc21 A OE2 GLU 241 A GLU 537 1_555 K ZN ZN . A ZN 955 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc22 A NE2 HIS 285 A HIS 581 1_555 J ZN ZN . A ZN 959 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc23 A ND1 HIS 302 A HIS 598 1_555 F ZN ZN . A ZN 954 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? # _chem_comp.formula 'C24 H50 O13' _chem_comp.formula_weight 546.646 _chem_comp.id 12P _chem_comp.mon_nstd_flag . _chem_comp.name 'DODECAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O37 C36 12P sing 1 n n O37 H37 12P sing 2 n n C36 C35 12P sing 3 n n C36 H361 12P sing 4 n n C36 H362 12P sing 5 n n C35 O34 12P sing 6 n n C35 H351 12P sing 7 n n C35 H352 12P sing 8 n n O34 C33 12P sing 9 n n C33 C32 12P sing 10 n n C33 H331 12P sing 11 n n C33 H332 12P sing 12 n n C32 O31 12P sing 13 n n C32 H321 12P sing 14 n n C32 H322 12P sing 15 n n O31 C30 12P sing 16 n n C30 C29 12P sing 17 n n C30 H301 12P sing 18 n n C30 H302 12P sing 19 n n C29 O28 12P sing 20 n n C29 H291 12P sing 21 n n C29 H292 12P sing 22 n n O28 C27 12P sing 23 n n C27 C26 12P sing 24 n n C27 H271 12P sing 25 n n C27 H272 12P sing 26 n n C26 O25 12P sing 27 n n C26 H261 12P sing 28 n n C26 H262 12P sing 29 n n O25 C24 12P sing 30 n n C24 C23 12P sing 31 n n C24 H241 12P sing 32 n n C24 H242 12P sing 33 n n C23 O22 12P sing 34 n n C23 H231 12P sing 35 n n C23 H232 12P sing 36 n n O22 C21 12P sing 37 n n C21 C20 12P sing 38 n n C21 H211 12P sing 39 n n C21 H212 12P sing 40 n n C20 O19 12P sing 41 n n C20 H201 12P sing 42 n n C20 H202 12P sing 43 n n O19 C18 12P sing 44 n n C18 C17 12P sing 45 n n C18 H181 12P sing 46 n n C18 H182 12P sing 47 n n C17 O16 12P sing 48 n n C17 H171 12P sing 49 n n C17 H172 12P sing 50 n n O16 C15 12P sing 51 n n C15 C14 12P sing 52 n n C15 H151 12P sing 53 n n C15 H152 12P sing 54 n n C14 O13 12P sing 55 n n C14 H141 12P sing 56 n n C14 H142 12P sing 57 n n O13 C12 12P sing 58 n n C12 C11 12P sing 59 n n C12 H121 12P sing 60 n n C12 H122 12P sing 61 n n C11 O10 12P sing 62 n n C11 H111 12P sing 63 n n C11 H112 12P sing 64 n n O10 C9 12P sing 65 n n C9 C8 12P sing 66 n n C9 H91 12P sing 67 n n C9 H92 12P sing 68 n n C8 O7 12P sing 69 n n C8 H81 12P sing 70 n n C8 H82 12P sing 71 n n O7 C6 12P sing 72 n n C6 C5 12P sing 73 n n C6 H61 12P sing 74 n n C6 H62 12P sing 75 n n C5 O4 12P sing 76 n n C5 H51 12P sing 77 n n C5 H52 12P sing 78 n n O4 C3 12P sing 79 n n C3 C2 12P sing 80 n n C3 H31 12P sing 81 n n C3 H32 12P sing 82 n n C2 O1 12P sing 83 n n C2 H21 12P sing 84 n n C2 H22 12P sing 85 n n O1 HO1 12P sing 86 n n # _atom_sites.entry_id 3M7P _atom_sites.fract_transf_matrix[1][1] 0.008014 _atom_sites.fract_transf_matrix[1][2] 0.004627 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009253 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 1430 1430 NAG NAG . C 2 NAG A 1 1528 1528 NAG NAG . D 2 NAG A 1 1542 1542 NAG NAG . E 3 ZN A 1 953 953 ZN ZN . F 3 ZN A 1 954 954 ZN ZN . G 3 ZN A 1 956 956 ZN ZN . H 3 ZN A 1 957 957 ZN ZN . I 3 ZN A 1 958 958 ZN ZN . J 3 ZN A 1 959 959 ZN ZN . K 3 ZN A 1 955 955 ZN ZN . L 4 12P A 1 189 189 12P 12P . M 4 12P A 1 190 190 12P 12P . N 5 HOH A 1 1 1 HOH HOH . N 5 HOH A 2 2 2 HOH HOH . N 5 HOH A 3 3 3 HOH HOH . N 5 HOH A 4 4 4 HOH HOH . N 5 HOH A 5 5 5 HOH HOH . N 5 HOH A 6 6 6 HOH HOH . N 5 HOH A 7 7 7 HOH HOH . N 5 HOH A 8 8 8 HOH HOH . N 5 HOH A 9 9 9 HOH HOH . N 5 HOH A 10 10 10 HOH HOH . N 5 HOH A 11 11 11 HOH HOH . N 5 HOH A 12 12 12 HOH HOH . N 5 HOH A 13 13 13 HOH HOH . N 5 HOH A 14 14 14 HOH HOH . N 5 HOH A 15 15 15 HOH HOH . N 5 HOH A 16 16 16 HOH HOH . N 5 HOH A 17 17 17 HOH HOH . N 5 HOH A 18 18 18 HOH HOH . N 5 HOH A 19 20 20 HOH HOH . N 5 HOH A 20 21 21 HOH HOH . N 5 HOH A 21 23 23 HOH HOH . N 5 HOH A 22 26 26 HOH HOH . N 5 HOH A 23 27 27 HOH HOH . N 5 HOH A 24 28 28 HOH HOH . N 5 HOH A 25 30 30 HOH HOH . N 5 HOH A 26 31 31 HOH HOH . N 5 HOH A 27 32 32 HOH HOH . N 5 HOH A 28 33 33 HOH HOH . N 5 HOH A 29 34 34 HOH HOH . N 5 HOH A 30 35 35 HOH HOH . N 5 HOH A 31 36 36 HOH HOH . N 5 HOH A 32 37 37 HOH HOH . N 5 HOH A 33 38 38 HOH HOH . N 5 HOH A 34 39 39 HOH HOH . N 5 HOH A 35 40 40 HOH HOH . N 5 HOH A 36 41 41 HOH HOH . N 5 HOH A 37 42 42 HOH HOH . N 5 HOH A 38 43 43 HOH HOH . N 5 HOH A 39 44 44 HOH HOH . N 5 HOH A 40 45 45 HOH HOH . N 5 HOH A 41 46 46 HOH HOH . N 5 HOH A 42 48 48 HOH HOH . N 5 HOH A 43 49 49 HOH HOH . N 5 HOH A 44 50 50 HOH HOH . N 5 HOH A 45 51 51 HOH HOH . N 5 HOH A 46 52 52 HOH HOH . N 5 HOH A 47 53 53 HOH HOH . N 5 HOH A 48 54 54 HOH HOH . N 5 HOH A 49 55 55 HOH HOH . N 5 HOH A 50 56 56 HOH HOH . N 5 HOH A 51 57 57 HOH HOH . N 5 HOH A 52 58 58 HOH HOH . N 5 HOH A 53 59 59 HOH HOH . N 5 HOH A 54 60 60 HOH HOH . N 5 HOH A 55 61 61 HOH HOH . N 5 HOH A 56 62 62 HOH HOH . N 5 HOH A 57 63 63 HOH HOH . N 5 HOH A 58 64 64 HOH HOH . N 5 HOH A 59 65 65 HOH HOH . N 5 HOH A 60 66 66 HOH HOH . N 5 HOH A 61 67 67 HOH HOH . N 5 HOH A 62 68 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C36 12P . . . L 4 32.222 44.821 11.685 1 61.67 ? C36 12P 189 A 1 HETATM 2 C C35 12P . . . L 4 31.999 43.535 12.536 1 62.34 ? C35 12P 189 A 1 HETATM 3 O O34 12P . . . L 4 32.102 42.016 12.284 1 65.08 ? O34 12P 189 A 1 HETATM 4 C C33 12P . . . L 4 32.147 41.164 11.003 1 64.17 ? C33 12P 189 A 1 HETATM 5 C C32 12P . . . L 4 33.086 40.198 11.472 1 63.77 ? C32 12P 189 A 1 HETATM 6 O O31 12P . . . L 4 33.835 39.477 10.644 1 65.78 ? O31 12P 189 A 1 HETATM 7 C C30 12P . . . L 4 33.394 38.252 10.071 1 65.32 ? C30 12P 189 A 1 HETATM 8 C C29 12P . . . L 4 33.997 37.582 8.903 1 64.42 ? C29 12P 189 A 1 HETATM 9 O O28 12P . . . L 4 33.315 37.275 7.655 1 64.9 ? O28 12P 189 A 1 HETATM 10 C C27 12P . . . L 4 34.583 36.588 7.094 1 65.35 ? C27 12P 189 A 1 HETATM 11 C C26 12P . . . L 4 36.217 37.157 6.927 1 64.26 ? C26 12P 189 A 1 HETATM 12 O O25 12P . . . L 4 37.004 38.209 5.968 1 62.87 ? O25 12P 189 A 1 HETATM 13 C C24 12P . . . L 4 37.462 39.806 5.425 1 59.83 ? C24 12P 189 A 1 HETATM 14 C C23 12P . . . L 4 37.015 40.677 4.556 1 59.49 ? C23 12P 189 A 1 HETATM 15 O O22 12P . . . L 4 36.782 39.625 3.667 1 62.48 ? O22 12P 189 A 1 HETATM 16 C C21 12P . . . L 4 36.618 39.64 2.234 1 63.16 ? C21 12P 189 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 98 _model_server_stats.query_time_ms 412 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #