data_3M8B # _model_server_result.job_id yE-8GxTFM6KsV5okUyHkdw _model_server_result.datetime_utc '2024-11-23 18:50:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m8b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":605}' # _entry.id 3M8B # _exptl.entry_id 3M8B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.438 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3M8B _cell.length_a 81.29 _cell.length_b 81.29 _cell.length_c 226.562 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M8B _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 10 A CYS 10 1_555 I S1 MTN . A MTN 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc1 A OD1 ASP 411 A ASP 411 1_555 L MG MG . A MG 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? # _chem_comp.formula 'C16 H34 O5' _chem_comp.formula_weight 306.438 _chem_comp.id C8E _chem_comp.mon_nstd_flag . _chem_comp.name (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 C8E sing 70 n n C1 H11 C8E sing 71 n n C1 H12 C8E sing 72 n n C1 H13 C8E sing 73 n n C2 C3 C8E sing 74 n n C2 H21 C8E sing 75 n n C2 H22 C8E sing 76 n n C3 C4 C8E sing 77 n n C3 H31 C8E sing 78 n n C3 H32 C8E sing 79 n n C4 C5 C8E sing 80 n n C4 H41 C8E sing 81 n n C4 H42 C8E sing 82 n n C5 C6 C8E sing 83 n n C5 H51 C8E sing 84 n n C5 H52 C8E sing 85 n n C6 C7 C8E sing 86 n n C6 H61 C8E sing 87 n n C6 H62 C8E sing 88 n n C7 C8 C8E sing 89 n n C7 H71 C8E sing 90 n n C7 H72 C8E sing 91 n n C8 O9 C8E sing 92 n n C8 H81 C8E sing 93 n n C8 H82 C8E sing 94 n n O9 C10 C8E sing 95 n n C10 C11 C8E sing 96 n n C10 H101 C8E sing 97 n n C10 H102 C8E sing 98 n n C11 O12 C8E sing 99 n n C11 H111 C8E sing 100 n n C11 H112 C8E sing 101 n n O12 C13 C8E sing 102 n n C13 C14 C8E sing 103 n n C13 H131 C8E sing 104 n n C13 H132 C8E sing 105 n n C14 O15 C8E sing 106 n n C14 H141 C8E sing 107 n n C14 H142 C8E sing 108 n n O15 C16 C8E sing 109 n n C16 C17 C8E sing 110 n n C16 H161 C8E sing 111 n n C16 H162 C8E sing 112 n n C17 O18 C8E sing 113 n n C17 H171 C8E sing 114 n n C17 H172 C8E sing 115 n n O18 C19 C8E sing 116 n n C19 C20 C8E sing 117 n n C19 H191 C8E sing 118 n n C19 H192 C8E sing 119 n n C20 O21 C8E sing 120 n n C20 H201 C8E sing 121 n n C20 H202 C8E sing 122 n n O21 HO2 C8E sing 123 n n # _atom_sites.entry_id 3M8B _atom_sites.fract_transf_matrix[1][1] 0.012302 _atom_sites.fract_transf_matrix[1][2] 0.007102 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014205 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 C8E A 1 601 800 C8E C8E . C 2 C8E A 1 602 801 C8E C8E . D 2 C8E A 1 603 802 C8E C8E . E 2 C8E A 1 604 803 C8E C8E . F 2 C8E A 1 605 804 C8E C8E . G 2 C8E A 1 606 805 C8E C8E . H 2 C8E A 1 607 806 C8E C8E . I 3 MTN A 1 608 10 MTN R1A . J 4 MG A 1 609 1 MG MG . K 4 MG A 1 610 2 MG MG . L 4 MG A 1 611 3 MG MG . M 4 MG A 1 612 4 MG MG . N 5 HOH A 1 701 1 HOH HOH . N 5 HOH A 2 702 2 HOH HOH . N 5 HOH A 3 703 3 HOH HOH . N 5 HOH A 4 704 4 HOH HOH . N 5 HOH A 5 705 5 HOH HOH . N 5 HOH A 6 706 6 HOH HOH . N 5 HOH A 7 707 7 HOH HOH . N 5 HOH A 8 708 8 HOH HOH . N 5 HOH A 9 709 9 HOH HOH . N 5 HOH A 10 710 10 HOH HOH . N 5 HOH A 11 711 11 HOH HOH . N 5 HOH A 12 712 12 HOH HOH . N 5 HOH A 13 713 13 HOH HOH . N 5 HOH A 14 714 14 HOH HOH . N 5 HOH A 15 715 15 HOH HOH . N 5 HOH A 16 716 16 HOH HOH . N 5 HOH A 17 717 17 HOH HOH . N 5 HOH A 18 718 18 HOH HOH . N 5 HOH A 19 719 19 HOH HOH . N 5 HOH A 20 720 20 HOH HOH . N 5 HOH A 21 721 21 HOH HOH . N 5 HOH A 22 722 22 HOH HOH . N 5 HOH A 23 723 23 HOH HOH . N 5 HOH A 24 724 24 HOH HOH . N 5 HOH A 25 725 25 HOH HOH . N 5 HOH A 26 726 26 HOH HOH . N 5 HOH A 27 727 27 HOH HOH . N 5 HOH A 28 728 28 HOH HOH . N 5 HOH A 29 729 29 HOH HOH . N 5 HOH A 30 730 30 HOH HOH . N 5 HOH A 31 731 31 HOH HOH . N 5 HOH A 32 732 32 HOH HOH . N 5 HOH A 33 733 33 HOH HOH . N 5 HOH A 34 734 34 HOH HOH . N 5 HOH A 35 735 35 HOH HOH . N 5 HOH A 36 736 36 HOH HOH . N 5 HOH A 37 737 37 HOH HOH . N 5 HOH A 38 738 38 HOH HOH . N 5 HOH A 39 739 39 HOH HOH . N 5 HOH A 40 740 40 HOH HOH . N 5 HOH A 41 741 41 HOH HOH . N 5 HOH A 42 742 42 HOH HOH . N 5 HOH A 43 743 43 HOH HOH . N 5 HOH A 44 744 44 HOH HOH . N 5 HOH A 45 745 45 HOH HOH . N 5 HOH A 46 746 46 HOH HOH . N 5 HOH A 47 747 47 HOH HOH . N 5 HOH A 48 748 48 HOH HOH . N 5 HOH A 49 749 49 HOH HOH . N 5 HOH A 50 750 50 HOH HOH . N 5 HOH A 51 751 51 HOH HOH . N 5 HOH A 52 752 52 HOH HOH . N 5 HOH A 53 753 53 HOH HOH . N 5 HOH A 54 754 54 HOH HOH . N 5 HOH A 55 755 55 HOH HOH . N 5 HOH A 56 756 56 HOH HOH . N 5 HOH A 57 757 57 HOH HOH . N 5 HOH A 58 758 58 HOH HOH . N 5 HOH A 59 759 59 HOH HOH . N 5 HOH A 60 760 60 HOH HOH . N 5 HOH A 61 761 61 HOH HOH . N 5 HOH A 62 762 62 HOH HOH . N 5 HOH A 63 763 63 HOH HOH . N 5 HOH A 64 764 64 HOH HOH . N 5 HOH A 65 765 65 HOH HOH . N 5 HOH A 66 766 66 HOH HOH . N 5 HOH A 67 767 67 HOH HOH . N 5 HOH A 68 768 68 HOH HOH . N 5 HOH A 69 769 69 HOH HOH . N 5 HOH A 70 770 70 HOH HOH . N 5 HOH A 71 771 71 HOH HOH . N 5 HOH A 72 772 72 HOH HOH . N 5 HOH A 73 773 73 HOH HOH . N 5 HOH A 74 774 74 HOH HOH . N 5 HOH A 75 775 75 HOH HOH . N 5 HOH A 76 776 76 HOH HOH . N 5 HOH A 77 777 77 HOH HOH . N 5 HOH A 78 778 78 HOH HOH . N 5 HOH A 79 779 79 HOH HOH . N 5 HOH A 80 780 80 HOH HOH . N 5 HOH A 81 781 81 HOH HOH . N 5 HOH A 82 782 82 HOH HOH . N 5 HOH A 83 783 83 HOH HOH . N 5 HOH A 84 784 84 HOH HOH . N 5 HOH A 85 785 85 HOH HOH . N 5 HOH A 86 786 86 HOH HOH . N 5 HOH A 87 787 87 HOH HOH . N 5 HOH A 88 788 88 HOH HOH . N 5 HOH A 89 789 89 HOH HOH . N 5 HOH A 90 790 90 HOH HOH . N 5 HOH A 91 791 91 HOH HOH . N 5 HOH A 92 792 92 HOH HOH . N 5 HOH A 93 793 93 HOH HOH . N 5 HOH A 94 794 94 HOH HOH . N 5 HOH A 95 795 95 HOH HOH . N 5 HOH A 96 796 96 HOH HOH . N 5 HOH A 97 797 97 HOH HOH . N 5 HOH A 98 798 98 HOH HOH . N 5 HOH A 99 799 99 HOH HOH . N 5 HOH A 100 800 100 HOH HOH . N 5 HOH A 101 801 101 HOH HOH . N 5 HOH A 102 802 102 HOH HOH . N 5 HOH A 103 803 103 HOH HOH . N 5 HOH A 104 804 104 HOH HOH . N 5 HOH A 105 805 105 HOH HOH . N 5 HOH A 106 806 106 HOH HOH . N 5 HOH A 107 807 107 HOH HOH . N 5 HOH A 108 808 108 HOH HOH . N 5 HOH A 109 809 109 HOH HOH . N 5 HOH A 110 810 110 HOH HOH . N 5 HOH A 111 811 111 HOH HOH . N 5 HOH A 112 812 112 HOH HOH . N 5 HOH A 113 813 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 C8E . . . F 2 -44.555 10.801 -2.855 1 48.12 ? C1 C8E 605 A 1 HETATM 2 C C2 C8E . . . F 2 -43.444 10.842 -1.815 1 46.61 ? C2 C8E 605 A 1 HETATM 3 C C3 C8E . . . F 2 -43.805 11.604 -0.568 1 48.12 ? C3 C8E 605 A 1 HETATM 4 C C4 C8E . . . F 2 -43.301 13.042 -0.575 1 49.94 ? C4 C8E 605 A 1 HETATM 5 C C5 C8E . . . F 2 -42.838 13.491 0.81 1 48.03 ? C5 C8E 605 A 1 HETATM 6 C C6 C8E . . . F 2 -42.25 14.936 0.869 1 45.96 ? C6 C8E 605 A 1 HETATM 7 C C7 C8E . . . F 2 -43.031 16.031 0.158 1 44.16 ? C7 C8E 605 A 1 HETATM 8 C C8 C8E . . . F 2 -43.865 16.867 1.073 1 44.9 ? C8 C8E 605 A 1 HETATM 9 O O9 C8E . . . F 2 -44.932 17.406 0.312 1 48.23 ? O9 C8E 605 A 1 HETATM 10 C C10 C8E . . . F 2 -45.931 18.1 1.037 1 50.77 ? C10 C8E 605 A 1 HETATM 11 C C11 C8E . . . F 2 -46.001 17.69 2.51 1 54.15 ? C11 C8E 605 A 1 HETATM 12 O O12 C8E . . . F 2 -47.281 18.027 3.032 1 57.75 ? O12 C8E 605 A 1 HETATM 13 C C13 C8E . . . F 2 -47.243 18.151 4.436 1 56.93 ? C13 C8E 605 A 1 HETATM 14 C C14 C8E . . . F 2 -47.391 16.806 5.093 1 55.78 ? C14 C8E 605 A 1 HETATM 15 O O15 C8E . . . F 2 -46.152 16.255 5.371 1 54.88 ? O15 C8E 605 A 1 HETATM 16 C C16 C8E . . . F 2 -46.219 15.048 6.109 1 56.78 ? C16 C8E 605 A 1 HETATM 17 C C17 C8E . . . F 2 -47.048 14.04 5.327 1 57.17 ? C17 C8E 605 A 1 HETATM 18 O O18 C8E . . . F 2 -46.383 12.814 5.212 1 59.91 ? O18 C8E 605 A 1 HETATM 19 C C19 C8E . . . F 2 -47.075 11.94 4.319 1 59.87 ? C19 C8E 605 A 1 HETATM 20 C C20 C8E . . . F 2 -48.351 11.399 4.948 1 61.34 ? C20 C8E 605 A 1 HETATM 21 O O21 C8E . . . F 2 -49.53 11.934 4.373 1 64.06 ? O21 C8E 605 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #