data_3M8D
#
_model_server_result.job_id            FVOU2E0hzNynpeLpywuKYA 
_model_server_result.datetime_utc      '2024-11-23 20:20:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3m8d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":708}' 
#
_entry.id    3M8D 
#
_exptl.entry_id    3M8D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              264.385 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3M8D 
_cell.length_a            82.051 
_cell.length_b            82.051 
_cell.length_c            224.457 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3M8D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 10 A CYS 10 1_555 I S1 MTN . A MTN 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc1 A OD1 ASP 179 A ASP 179 1_555 J CA CA . A CA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc2 A O GLN 191 A GLN 191 1_555 J CA CA . A CA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc3 A OD1 ASP 193 A ASP 193 1_555 J CA CA . A CA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc4 A O ASP 193 A ASP 193 1_555 J CA CA . A CA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? 
metalc ? metalc5 A OD2 ASP 193 A ASP 193 1_555 K CA CA . A CA 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc6 A OD1 ASP 193 A ASP 193 1_555 K CA CA . A CA 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? 
metalc ? metalc7 A OD2 ASP 195 A ASP 195 1_555 J CA CA . A CA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? 
metalc ? metalc8 A OD1 ASP 195 A ASP 195 1_555 K CA CA . A CA 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? 
metalc ? metalc9 A O TYR 229 A TYR 229 1_555 K CA CA . A CA 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc10 A OD2 ASP 230 A ASP 230 1_555 J CA CA . A CA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc11 A OD1 ASP 230 A ASP 230 1_555 J CA CA . A CA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? 
metalc ? metalc12 A OD1 ASP 230 A ASP 230 1_555 K CA CA . A CA 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
#
_chem_comp.formula           'C10 H18 N O3 S2' 
_chem_comp.formula_weight    264.385 
_chem_comp.id                MTN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     MTSL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 N1 MTN sing 483 n n 
N1 C1 MTN sing 484 n n 
N1 C5 MTN sing 485 n n 
C1 C2 MTN sing 486 n n 
C1 C8 MTN sing 487 n n 
C1 C9 MTN sing 488 n n 
C2 C3 MTN doub 489 n n 
C2 H2 MTN sing 490 n n 
C3 C4 MTN sing 491 n n 
C3 C5 MTN sing 492 n n 
C4 S1 MTN sing 493 n n 
C4 H41 MTN sing 494 n n 
C4 H42 MTN sing 495 n n 
C5 C6 MTN sing 496 n n 
C5 C7 MTN sing 497 n n 
C6 H61 MTN sing 498 n n 
C6 H62 MTN sing 499 n n 
C6 H63 MTN sing 500 n n 
C7 H71 MTN sing 501 n n 
C7 H72 MTN sing 502 n n 
C7 H73 MTN sing 503 n n 
C8 H81 MTN sing 504 n n 
C8 H82 MTN sing 505 n n 
C8 H83 MTN sing 506 n n 
C9 H91 MTN sing 507 n n 
C9 H92 MTN sing 508 n n 
C9 H93 MTN sing 509 n n 
S1 S2 MTN sing 510 n n 
S2 O2 MTN doub 511 n n 
S2 O3 MTN doub 512 n n 
S2 C12 MTN sing 513 n n 
C12 H4 MTN sing 514 n n 
C12 H1 MTN sing 515 n n 
C12 H3 MTN sing 516 n n 
#
_atom_sites.entry_id                     3M8D 
_atom_sites.fract_transf_matrix[1][1]    0.012188 
_atom_sites.fract_transf_matrix[1][2]    0.007036 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014073 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004455 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CNC A 1 701 701 CNC CNC . 
C 3 C8E A 1 702 800 C8E C8E . 
D 3 C8E A 1 703 801 C8E C8E . 
E 3 C8E A 1 704 802 C8E C8E . 
F 3 C8E A 1 705 803 C8E C8E . 
G 3 C8E A 1 706 804 C8E C8E . 
H 3 C8E A 1 707 805 C8E C8E . 
I 4 MTN A 1 708 10 MTN R1A . 
J 5 CA A 1 709 1 CA CA . 
K 5 CA A 1 710 2 CA CA . 
L 5 CA A 1 711 3 CA CA . 
M 6 HOH A 1 801 1 HOH HOH . 
M 6 HOH A 2 802 2 HOH HOH . 
M 6 HOH A 3 803 3 HOH HOH . 
M 6 HOH A 4 804 4 HOH HOH . 
M 6 HOH A 5 805 5 HOH HOH . 
M 6 HOH A 6 806 6 HOH HOH . 
M 6 HOH A 7 807 7 HOH HOH . 
M 6 HOH A 8 808 8 HOH HOH . 
M 6 HOH A 9 809 9 HOH HOH . 
M 6 HOH A 10 810 10 HOH HOH . 
M 6 HOH A 11 811 11 HOH HOH . 
M 6 HOH A 12 812 12 HOH HOH . 
M 6 HOH A 13 813 13 HOH HOH . 
M 6 HOH A 14 814 14 HOH HOH . 
M 6 HOH A 15 815 15 HOH HOH . 
M 6 HOH A 16 816 16 HOH HOH . 
M 6 HOH A 17 817 17 HOH HOH . 
M 6 HOH A 18 818 18 HOH HOH . 
M 6 HOH A 19 819 19 HOH HOH . 
M 6 HOH A 20 820 20 HOH HOH . 
M 6 HOH A 21 821 21 HOH HOH . 
M 6 HOH A 22 822 22 HOH HOH . 
M 6 HOH A 23 823 23 HOH HOH . 
M 6 HOH A 24 824 24 HOH HOH . 
M 6 HOH A 25 825 25 HOH HOH . 
M 6 HOH A 26 826 26 HOH HOH . 
M 6 HOH A 27 827 27 HOH HOH . 
M 6 HOH A 28 828 28 HOH HOH . 
M 6 HOH A 29 829 29 HOH HOH . 
M 6 HOH A 30 830 30 HOH HOH . 
M 6 HOH A 31 831 31 HOH HOH . 
M 6 HOH A 32 832 32 HOH HOH . 
M 6 HOH A 33 833 33 HOH HOH . 
M 6 HOH A 34 834 34 HOH HOH . 
M 6 HOH A 35 835 35 HOH HOH . 
M 6 HOH A 36 836 36 HOH HOH . 
M 6 HOH A 37 837 37 HOH HOH . 
M 6 HOH A 38 838 38 HOH HOH . 
M 6 HOH A 39 839 39 HOH HOH . 
M 6 HOH A 40 840 40 HOH HOH . 
M 6 HOH A 41 841 41 HOH HOH . 
M 6 HOH A 42 842 42 HOH HOH . 
M 6 HOH A 43 843 43 HOH HOH . 
M 6 HOH A 44 844 44 HOH HOH . 
M 6 HOH A 45 845 45 HOH HOH . 
M 6 HOH A 46 846 46 HOH HOH . 
M 6 HOH A 47 847 47 HOH HOH . 
M 6 HOH A 48 848 48 HOH HOH . 
M 6 HOH A 49 849 49 HOH HOH . 
M 6 HOH A 50 850 50 HOH HOH . 
M 6 HOH A 51 851 51 HOH HOH . 
M 6 HOH A 52 852 52 HOH HOH . 
M 6 HOH A 53 853 53 HOH HOH . 
M 6 HOH A 54 854 54 HOH HOH . 
M 6 HOH A 55 855 55 HOH HOH . 
M 6 HOH A 56 856 56 HOH HOH . 
M 6 HOH A 57 857 57 HOH HOH . 
M 6 HOH A 58 858 58 HOH HOH . 
M 6 HOH A 59 859 59 HOH HOH . 
M 6 HOH A 60 860 60 HOH HOH . 
M 6 HOH A 61 861 61 HOH HOH . 
M 6 HOH A 62 862 62 HOH HOH . 
M 6 HOH A 63 863 63 HOH HOH . 
M 6 HOH A 64 864 64 HOH HOH . 
M 6 HOH A 65 865 65 HOH HOH . 
M 6 HOH A 66 866 66 HOH HOH . 
M 6 HOH A 67 867 67 HOH HOH . 
M 6 HOH A 68 868 68 HOH HOH . 
M 6 HOH A 69 869 69 HOH HOH . 
M 6 HOH A 70 870 70 HOH HOH . 
M 6 HOH A 71 871 71 HOH HOH . 
M 6 HOH A 72 872 72 HOH HOH . 
M 6 HOH A 73 873 73 HOH HOH . 
M 6 HOH A 74 874 74 HOH HOH . 
M 6 HOH A 75 875 75 HOH HOH . 
M 6 HOH A 76 876 76 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 MTN . . . I 4 34.707 -20.809 -28.854 0.75 73.7 ? O1 MTN 708 A 1 
HETATM 2 N N1 MTN . . . I 4 33.533 -21.66 -29.051 0.75 73.84 ? N1 MTN 708 A 1 
HETATM 3 C C1 MTN . . . I 4 32.312 -21.636 -28.216 0.75 73.95 ? C1 MTN 708 A 1 
HETATM 4 C C2 MTN . . . I 4 31.396 -22.736 -28.755 0.75 71.47 ? C2 MTN 708 A 1 
HETATM 5 C C3 MTN . . . I 4 32.011 -23.339 -29.767 0.75 69.83 ? C3 MTN 708 A 1 
HETATM 6 C C4 MTN . . . I 4 31.493 -24.466 -30.631 0.75 66.45 ? C4 MTN 708 A 1 
HETATM 7 S S1 MTN . . . I 4 29.786 -24.073 -31.119 0.75 57.86 ? S1 MTN 708 A 1 
HETATM 8 C C5 MTN . . . I 4 33.373 -22.735 -30.067 0.75 72.11 ? C5 MTN 708 A 1 
HETATM 9 C C6 MTN . . . I 4 33.305 -22.141 -31.502 0.75 71.04 ? C6 MTN 708 A 1 
HETATM 10 C C7 MTN . . . I 4 34.461 -23.807 -29.868 0.75 71.21 ? C7 MTN 708 A 1 
HETATM 11 C C8 MTN . . . I 4 32.811 -22.029 -26.838 0.75 75.28 ? C8 MTN 708 A 1 
HETATM 12 C C9 MTN . . . I 4 31.598 -20.265 -28.269 0.75 74.74 ? C9 MTN 708 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           12 
#