data_3M8D
#
_model_server_result.job_id            SVd5Fmv8DYgwCrTPp4spIw 
_model_server_result.datetime_utc      '2024-11-23 20:44:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3m8d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":709}' 
#
_entry.id    3M8D 
#
_exptl.entry_id    3M8D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3M8D 
_cell.length_a            82.051 
_cell.length_b            82.051 
_cell.length_c            224.457 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3M8D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 J N N 
? 5 K N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 10 A CYS 10 1_555 I S1 MTN . A MTN 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc1 A OD1 ASP 179 A ASP 179 1_555 J CA CA . A CA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc2 A O GLN 191 A GLN 191 1_555 J CA CA . A CA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc3 A OD1 ASP 193 A ASP 193 1_555 J CA CA . A CA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc4 A O ASP 193 A ASP 193 1_555 J CA CA . A CA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? 
metalc ? metalc5 A OD2 ASP 193 A ASP 193 1_555 K CA CA . A CA 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc6 A OD1 ASP 193 A ASP 193 1_555 K CA CA . A CA 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? 
metalc ? metalc7 A OD2 ASP 195 A ASP 195 1_555 J CA CA . A CA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? 
metalc ? metalc8 A OD1 ASP 195 A ASP 195 1_555 K CA CA . A CA 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? 
metalc ? metalc9 A O TYR 229 A TYR 229 1_555 K CA CA . A CA 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc10 A OD2 ASP 230 A ASP 230 1_555 J CA CA . A CA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc11 A OD1 ASP 230 A ASP 230 1_555 J CA CA . A CA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? 
metalc ? metalc12 A OD1 ASP 230 A ASP 230 1_555 K CA CA . A CA 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3M8D 
_atom_sites.fract_transf_matrix[1][1]    0.012188 
_atom_sites.fract_transf_matrix[1][2]    0.007036 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014073 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004455 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CNC A 1 701 701 CNC CNC . 
C 3 C8E A 1 702 800 C8E C8E . 
D 3 C8E A 1 703 801 C8E C8E . 
E 3 C8E A 1 704 802 C8E C8E . 
F 3 C8E A 1 705 803 C8E C8E . 
G 3 C8E A 1 706 804 C8E C8E . 
H 3 C8E A 1 707 805 C8E C8E . 
I 4 MTN A 1 708 10 MTN R1A . 
J 5 CA A 1 709 1 CA CA . 
K 5 CA A 1 710 2 CA CA . 
L 5 CA A 1 711 3 CA CA . 
M 6 HOH A 1 801 1 HOH HOH . 
M 6 HOH A 2 802 2 HOH HOH . 
M 6 HOH A 3 803 3 HOH HOH . 
M 6 HOH A 4 804 4 HOH HOH . 
M 6 HOH A 5 805 5 HOH HOH . 
M 6 HOH A 6 806 6 HOH HOH . 
M 6 HOH A 7 807 7 HOH HOH . 
M 6 HOH A 8 808 8 HOH HOH . 
M 6 HOH A 9 809 9 HOH HOH . 
M 6 HOH A 10 810 10 HOH HOH . 
M 6 HOH A 11 811 11 HOH HOH . 
M 6 HOH A 12 812 12 HOH HOH . 
M 6 HOH A 13 813 13 HOH HOH . 
M 6 HOH A 14 814 14 HOH HOH . 
M 6 HOH A 15 815 15 HOH HOH . 
M 6 HOH A 16 816 16 HOH HOH . 
M 6 HOH A 17 817 17 HOH HOH . 
M 6 HOH A 18 818 18 HOH HOH . 
M 6 HOH A 19 819 19 HOH HOH . 
M 6 HOH A 20 820 20 HOH HOH . 
M 6 HOH A 21 821 21 HOH HOH . 
M 6 HOH A 22 822 22 HOH HOH . 
M 6 HOH A 23 823 23 HOH HOH . 
M 6 HOH A 24 824 24 HOH HOH . 
M 6 HOH A 25 825 25 HOH HOH . 
M 6 HOH A 26 826 26 HOH HOH . 
M 6 HOH A 27 827 27 HOH HOH . 
M 6 HOH A 28 828 28 HOH HOH . 
M 6 HOH A 29 829 29 HOH HOH . 
M 6 HOH A 30 830 30 HOH HOH . 
M 6 HOH A 31 831 31 HOH HOH . 
M 6 HOH A 32 832 32 HOH HOH . 
M 6 HOH A 33 833 33 HOH HOH . 
M 6 HOH A 34 834 34 HOH HOH . 
M 6 HOH A 35 835 35 HOH HOH . 
M 6 HOH A 36 836 36 HOH HOH . 
M 6 HOH A 37 837 37 HOH HOH . 
M 6 HOH A 38 838 38 HOH HOH . 
M 6 HOH A 39 839 39 HOH HOH . 
M 6 HOH A 40 840 40 HOH HOH . 
M 6 HOH A 41 841 41 HOH HOH . 
M 6 HOH A 42 842 42 HOH HOH . 
M 6 HOH A 43 843 43 HOH HOH . 
M 6 HOH A 44 844 44 HOH HOH . 
M 6 HOH A 45 845 45 HOH HOH . 
M 6 HOH A 46 846 46 HOH HOH . 
M 6 HOH A 47 847 47 HOH HOH . 
M 6 HOH A 48 848 48 HOH HOH . 
M 6 HOH A 49 849 49 HOH HOH . 
M 6 HOH A 50 850 50 HOH HOH . 
M 6 HOH A 51 851 51 HOH HOH . 
M 6 HOH A 52 852 52 HOH HOH . 
M 6 HOH A 53 853 53 HOH HOH . 
M 6 HOH A 54 854 54 HOH HOH . 
M 6 HOH A 55 855 55 HOH HOH . 
M 6 HOH A 56 856 56 HOH HOH . 
M 6 HOH A 57 857 57 HOH HOH . 
M 6 HOH A 58 858 58 HOH HOH . 
M 6 HOH A 59 859 59 HOH HOH . 
M 6 HOH A 60 860 60 HOH HOH . 
M 6 HOH A 61 861 61 HOH HOH . 
M 6 HOH A 62 862 62 HOH HOH . 
M 6 HOH A 63 863 63 HOH HOH . 
M 6 HOH A 64 864 64 HOH HOH . 
M 6 HOH A 65 865 65 HOH HOH . 
M 6 HOH A 66 866 66 HOH HOH . 
M 6 HOH A 67 867 67 HOH HOH . 
M 6 HOH A 68 868 68 HOH HOH . 
M 6 HOH A 69 869 69 HOH HOH . 
M 6 HOH A 70 870 70 HOH HOH . 
M 6 HOH A 71 871 71 HOH HOH . 
M 6 HOH A 72 872 72 HOH HOH . 
M 6 HOH A 73 873 73 HOH HOH . 
M 6 HOH A 74 874 74 HOH HOH . 
M 6 HOH A 75 875 75 HOH HOH . 
M 6 HOH A 76 876 76 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         J 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               8.567 
_atom_site.Cartn_y               -25.651 
_atom_site.Cartn_z               2.409 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        75.46 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           709 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#