data_3M8S # _model_server_result.job_id PlBsvDNCrvTTlOoO11T57g _model_server_result.datetime_utc '2024-11-18 14:33:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m8s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 3M8S # _exptl.entry_id 3M8S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3M8S _cell.length_a 108.742 _cell.length_b 108.742 _cell.length_c 90.755 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M8S _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DC 11 B DC 111 1_555 B P DOC 12 B DOC 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? metalc ? metalc1 E MG MG . A MG 1 1_555 P O HOH . A HOH 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc2 E MG MG . A MG 1 1_555 D O10 HXB . A HXB 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc3 E MG MG . A MG 1 1_555 A OD2 ASP 318 A ASP 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc4 E MG MG . A MG 1 1_555 A OD1 ASP 493 A ASP 785 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc5 E MG MG . A MG 1 1_555 P O HOH . A HOH 840 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc6 F MG MG . A MG 2 1_555 D O6 HXB . A HXB 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? metalc ? metalc7 F MG MG . A MG 2 1_555 D O10 HXB . A HXB 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc8 F MG MG . A MG 2 1_555 D O9 HXB . A HXB 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc9 F MG MG . A MG 2 1_555 A OD1 ASP 318 A ASP 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc10 F MG MG . A MG 2 1_555 A O TYR 319 A TYR 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc11 F MG MG . A MG 2 1_555 A OD2 ASP 493 A ASP 785 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? hydrog WATSON-CRICK hydrog1 B N1 DG 1 B DG 101 1_555 C N3 DC 16 C DC 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 1 B DG 101 1_555 C O2 DC 16 C DC 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 1 B DG 101 1_555 C N4 DC 16 C DC 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DA 2 B DA 102 1_555 C N3 DT 15 C DT 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N6 DA 2 B DA 102 1_555 C O4 DT 15 C DT 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N3 DC 3 B DC 103 1_555 C N1 DG 14 C DG 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N4 DC 3 B DC 103 1_555 C O6 DG 14 C DG 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O2 DC 3 B DC 103 1_555 C N2 DG 14 C DG 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N3 DC 4 B DC 104 1_555 C N1 DG 13 C DG 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N4 DC 4 B DC 104 1_555 C O6 DG 13 C DG 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O2 DC 4 B DC 104 1_555 C N2 DG 13 C DG 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N1 DA 5 B DA 105 1_555 C N3 DT 12 C DT 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N6 DA 5 B DA 105 1_555 C O4 DT 12 C DT 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 DC 6 B DC 106 1_555 C N1 DG 11 C DG 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N4 DC 6 B DC 106 1_555 C O6 DG 11 C DG 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O2 DC 6 B DC 106 1_555 C N2 DG 11 C DG 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N1 DG 7 B DG 107 1_555 C N3 DC 10 C DC 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N2 DG 7 B DG 107 1_555 C O2 DC 10 C DC 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B O6 DG 7 B DG 107 1_555 C N4 DC 10 C DC 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N1 DG 8 B DG 108 1_555 C N3 DC 9 C DC 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N2 DG 8 B DG 108 1_555 C O2 DC 9 C DC 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B O6 DG 8 B DG 108 1_555 C N4 DC 9 C DC 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N3 DC 9 B DC 109 1_555 C N1 DG 8 C DG 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N4 DC 9 B DC 109 1_555 C O6 DG 8 C DG 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B O2 DC 9 B DC 109 1_555 C N2 DG 8 C DG 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N1 DG 10 B DG 110 1_555 C N3 DC 7 C DC 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N2 DG 10 B DG 110 1_555 C O2 DC 7 C DC 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B O6 DG 10 B DG 110 1_555 C N4 DC 7 C DC 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B N3 DC 11 B DC 111 1_555 C N1 DG 6 C DG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B N4 DC 11 B DC 111 1_555 C O6 DG 6 C DG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 B O2 DC 11 B DC 111 1_555 C N2 DG 6 C DG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 B N3 DOC 12 B DOC 112 1_555 C N1 DG 5 C DG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 B N4 DOC 12 B DOC 112 1_555 C O6 DG 5 C DG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 B O2 DOC 12 B DOC 112 1_555 C N2 DG 5 C DG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3M8S _atom_sites.fract_transf_matrix[1][1] 0.009196 _atom_sites.fract_transf_matrix[1][2] 0.005309 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010619 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011019 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HXB A 1 113 113 HXB HXB . E 5 MG A 1 1 1 MG MG . F 5 MG A 1 2 2 MG MG . G 6 GOL A 1 833 2 GOL GOL . H 7 PEG A 1 834 1 PEG PEG . I 8 15P A 1 835 2 15P 15P . J 9 ACT A 1 836 1 ACT ACT . K 9 ACT A 1 837 2 ACT ACT . L 9 ACT A 1 3 3 ACT ACT . M 6 GOL B 1 3 3 GOL GOL . N 6 GOL C 1 1 1 GOL GOL . O 9 ACT C 1 4 4 ACT ACT . P 10 HOH A 1 5 5 HOH HOH . P 10 HOH A 2 6 6 HOH HOH . P 10 HOH A 3 7 7 HOH HOH . P 10 HOH A 4 8 8 HOH HOH . P 10 HOH A 5 9 9 HOH HOH . P 10 HOH A 6 10 10 HOH HOH . P 10 HOH A 7 11 11 HOH HOH . P 10 HOH A 8 12 12 HOH HOH . P 10 HOH A 9 13 13 HOH HOH . P 10 HOH A 10 15 15 HOH HOH . P 10 HOH A 11 16 16 HOH HOH . P 10 HOH A 12 17 17 HOH HOH . P 10 HOH A 13 18 18 HOH HOH . P 10 HOH A 14 19 19 HOH HOH . P 10 HOH A 15 21 21 HOH HOH . P 10 HOH A 16 22 22 HOH HOH . P 10 HOH A 17 23 23 HOH HOH . P 10 HOH A 18 24 24 HOH HOH . P 10 HOH A 19 26 26 HOH HOH . P 10 HOH A 20 28 28 HOH HOH . P 10 HOH A 21 30 30 HOH HOH . P 10 HOH A 22 32 32 HOH HOH . P 10 HOH A 23 33 33 HOH HOH . P 10 HOH A 24 34 34 HOH HOH . P 10 HOH A 25 35 35 HOH HOH . P 10 HOH A 26 36 36 HOH HOH . P 10 HOH A 27 38 38 HOH HOH . P 10 HOH A 28 39 39 HOH HOH . P 10 HOH A 29 41 41 HOH HOH . P 10 HOH A 30 42 42 HOH HOH . P 10 HOH A 31 43 43 HOH HOH . P 10 HOH A 32 44 44 HOH HOH . P 10 HOH A 33 47 47 HOH HOH . P 10 HOH A 34 50 50 HOH HOH . P 10 HOH A 35 51 51 HOH HOH . P 10 HOH A 36 52 52 HOH HOH . P 10 HOH A 37 53 53 HOH HOH . P 10 HOH A 38 54 54 HOH HOH . P 10 HOH A 39 55 55 HOH HOH . P 10 HOH A 40 56 56 HOH HOH . P 10 HOH A 41 57 57 HOH HOH . P 10 HOH A 42 58 58 HOH HOH . P 10 HOH A 43 59 59 HOH HOH . P 10 HOH A 44 60 60 HOH HOH . P 10 HOH A 45 61 61 HOH HOH . P 10 HOH A 46 62 62 HOH HOH . P 10 HOH A 47 63 63 HOH HOH . P 10 HOH A 48 64 64 HOH HOH . P 10 HOH A 49 65 65 HOH HOH . P 10 HOH A 50 66 66 HOH HOH . P 10 HOH A 51 67 67 HOH HOH . P 10 HOH A 52 68 68 HOH HOH . P 10 HOH A 53 69 69 HOH HOH . P 10 HOH A 54 70 70 HOH HOH . P 10 HOH A 55 72 72 HOH HOH . P 10 HOH A 56 73 73 HOH HOH . P 10 HOH A 57 74 74 HOH HOH . P 10 HOH A 58 75 75 HOH HOH . P 10 HOH A 59 76 76 HOH HOH . P 10 HOH A 60 77 77 HOH HOH . P 10 HOH A 61 80 80 HOH HOH . P 10 HOH A 62 81 81 HOH HOH . P 10 HOH A 63 82 82 HOH HOH . P 10 HOH A 64 83 83 HOH HOH . P 10 HOH A 65 85 85 HOH HOH . P 10 HOH A 66 86 86 HOH HOH . P 10 HOH A 67 87 87 HOH HOH . P 10 HOH A 68 89 89 HOH HOH . P 10 HOH A 69 90 90 HOH HOH . P 10 HOH A 70 91 91 HOH HOH . P 10 HOH A 71 97 97 HOH HOH . P 10 HOH A 72 98 98 HOH HOH . P 10 HOH A 73 99 99 HOH HOH . P 10 HOH A 74 100 100 HOH HOH . P 10 HOH A 75 104 104 HOH HOH . P 10 HOH A 76 105 105 HOH HOH . P 10 HOH A 77 106 106 HOH HOH . P 10 HOH A 78 107 107 HOH HOH . P 10 HOH A 79 109 109 HOH HOH . P 10 HOH A 80 110 110 HOH HOH . P 10 HOH A 81 111 111 HOH HOH . P 10 HOH A 82 115 115 HOH HOH . P 10 HOH A 83 116 116 HOH HOH . P 10 HOH A 84 117 117 HOH HOH . P 10 HOH A 85 120 120 HOH HOH . P 10 HOH A 86 121 121 HOH HOH . P 10 HOH A 87 122 122 HOH HOH . P 10 HOH A 88 123 123 HOH HOH . P 10 HOH A 89 838 1 HOH HOH . P 10 HOH A 90 839 2 HOH HOH . P 10 HOH A 91 840 3 HOH HOH . P 10 HOH A 92 841 113 HOH HOH . Q 10 HOH B 1 4 4 HOH HOH . Q 10 HOH B 2 20 20 HOH HOH . Q 10 HOH B 3 27 27 HOH HOH . Q 10 HOH B 4 40 40 HOH HOH . Q 10 HOH B 5 46 46 HOH HOH . Q 10 HOH B 6 49 49 HOH HOH . Q 10 HOH B 7 71 71 HOH HOH . Q 10 HOH B 8 92 92 HOH HOH . Q 10 HOH B 9 94 94 HOH HOH . Q 10 HOH B 10 95 95 HOH HOH . Q 10 HOH B 11 96 96 HOH HOH . Q 10 HOH B 12 113 101 HOH HOH . Q 10 HOH B 13 114 102 HOH HOH . Q 10 HOH B 14 115 103 HOH HOH . Q 10 HOH B 15 116 108 HOH HOH . R 10 HOH C 1 14 14 HOH HOH . R 10 HOH C 2 25 25 HOH HOH . R 10 HOH C 3 29 29 HOH HOH . R 10 HOH C 4 31 31 HOH HOH . R 10 HOH C 5 37 37 HOH HOH . R 10 HOH C 6 45 45 HOH HOH . R 10 HOH C 7 48 48 HOH HOH . R 10 HOH C 8 78 78 HOH HOH . R 10 HOH C 9 79 79 HOH HOH . R 10 HOH C 10 84 84 HOH HOH . R 10 HOH C 11 88 88 HOH HOH . R 10 HOH C 12 93 93 HOH HOH . R 10 HOH C 13 112 112 HOH HOH . R 10 HOH C 14 114 114 HOH HOH . R 10 HOH C 15 118 118 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 22.377 _atom_site.Cartn_y -16.58 _atom_site.Cartn_z -13.741 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.34 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 165 _model_server_stats.create_model_time_ms 97 _model_server_stats.query_time_ms 381 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #