data_3M92
#
_model_server_result.job_id            -woN7ihaH0MtQRoPMbH1aQ 
_model_server_result.datetime_utc      '2024-11-05 00:30:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3m92 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":86}' 
#
_entry.id    3M92 
#
_exptl.entry_id    3M92 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3M92 
_cell.length_a            56.35 
_cell.length_b            56.35 
_cell.length_c            132.26 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3M92 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASN 88 A ASN 66 1_555 A N MSE 89 A MSE 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale2 A C MSE 89 A MSE 67 1_555 A N PHE 90 A PHE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale3 B C ASN 88 B ASN 66 1_555 B N MSE 89 B MSE 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale4 B C MSE 89 B MSE 67 1_555 B N PHE 90 B PHE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
metalc ? metalc1 E O HOH . A HOH 98 1_555 D NA NA . B NA 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc2 B O SER 98 B SER 76 1_555 D NA NA . B NA 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc3 B O TYR 101 B TYR 79 1_555 D NA NA . B NA 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc4 D NA NA . B NA 86 1_555 F O HOH . B HOH 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc5 D NA NA . B NA 86 1_555 F O HOH . B HOH 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3M92 
_atom_sites.fract_transf_matrix[1][1]    0.017746 
_atom_sites.fract_transf_matrix[1][2]    0.010246 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020491 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007561 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CL A 1 86 1 CL CL . 
D 3 NA B 1 86 1 NA NA . 
E 4 HOH A 1 87 3 HOH HOH . 
E 4 HOH A 2 88 5 HOH HOH . 
E 4 HOH A 3 89 89 HOH HOH . 
E 4 HOH A 4 90 90 HOH HOH . 
E 4 HOH A 5 91 91 HOH HOH . 
E 4 HOH A 6 92 9 HOH HOH . 
E 4 HOH A 7 93 10 HOH HOH . 
E 4 HOH A 8 94 13 HOH HOH . 
E 4 HOH A 9 95 15 HOH HOH . 
E 4 HOH A 10 96 19 HOH HOH . 
E 4 HOH A 11 97 22 HOH HOH . 
E 4 HOH A 12 98 23 HOH HOH . 
E 4 HOH A 13 99 25 HOH HOH . 
E 4 HOH A 14 100 26 HOH HOH . 
E 4 HOH A 15 101 28 HOH HOH . 
E 4 HOH A 16 102 30 HOH HOH . 
E 4 HOH A 17 103 31 HOH HOH . 
E 4 HOH A 18 104 32 HOH HOH . 
E 4 HOH A 19 105 34 HOH HOH . 
E 4 HOH A 20 106 39 HOH HOH . 
E 4 HOH A 21 107 44 HOH HOH . 
E 4 HOH A 22 108 46 HOH HOH . 
E 4 HOH A 23 109 50 HOH HOH . 
E 4 HOH A 24 110 52 HOH HOH . 
E 4 HOH A 25 111 54 HOH HOH . 
E 4 HOH A 26 112 57 HOH HOH . 
E 4 HOH A 27 113 58 HOH HOH . 
E 4 HOH A 28 114 60 HOH HOH . 
E 4 HOH A 29 115 62 HOH HOH . 
E 4 HOH A 30 116 66 HOH HOH . 
E 4 HOH A 31 117 69 HOH HOH . 
E 4 HOH A 32 118 70 HOH HOH . 
E 4 HOH A 33 119 71 HOH HOH . 
E 4 HOH A 34 120 72 HOH HOH . 
E 4 HOH A 35 121 78 HOH HOH . 
E 4 HOH A 36 122 79 HOH HOH . 
E 4 HOH A 37 123 83 HOH HOH . 
E 4 HOH A 38 124 85 HOH HOH . 
E 4 HOH A 39 125 1 HOH HOH . 
F 4 HOH B 1 87 87 HOH HOH . 
F 4 HOH B 2 88 88 HOH HOH . 
F 4 HOH B 3 89 4 HOH HOH . 
F 4 HOH B 4 90 6 HOH HOH . 
F 4 HOH B 5 91 7 HOH HOH . 
F 4 HOH B 6 92 8 HOH HOH . 
F 4 HOH B 7 93 11 HOH HOH . 
F 4 HOH B 8 94 12 HOH HOH . 
F 4 HOH B 9 95 14 HOH HOH . 
F 4 HOH B 10 96 16 HOH HOH . 
F 4 HOH B 11 97 17 HOH HOH . 
F 4 HOH B 12 98 18 HOH HOH . 
F 4 HOH B 13 99 20 HOH HOH . 
F 4 HOH B 14 100 21 HOH HOH . 
F 4 HOH B 15 101 24 HOH HOH . 
F 4 HOH B 16 102 27 HOH HOH . 
F 4 HOH B 17 103 29 HOH HOH . 
F 4 HOH B 18 104 33 HOH HOH . 
F 4 HOH B 19 105 35 HOH HOH . 
F 4 HOH B 20 106 36 HOH HOH . 
F 4 HOH B 21 107 37 HOH HOH . 
F 4 HOH B 22 108 38 HOH HOH . 
F 4 HOH B 23 109 40 HOH HOH . 
F 4 HOH B 24 110 41 HOH HOH . 
F 4 HOH B 25 111 42 HOH HOH . 
F 4 HOH B 26 112 43 HOH HOH . 
F 4 HOH B 27 113 45 HOH HOH . 
F 4 HOH B 28 114 47 HOH HOH . 
F 4 HOH B 29 115 48 HOH HOH . 
F 4 HOH B 30 116 49 HOH HOH . 
F 4 HOH B 31 117 51 HOH HOH . 
F 4 HOH B 32 118 53 HOH HOH . 
F 4 HOH B 33 119 55 HOH HOH . 
F 4 HOH B 34 120 56 HOH HOH . 
F 4 HOH B 35 121 59 HOH HOH . 
F 4 HOH B 36 122 61 HOH HOH . 
F 4 HOH B 37 123 63 HOH HOH . 
F 4 HOH B 38 124 64 HOH HOH . 
F 4 HOH B 39 125 65 HOH HOH . 
F 4 HOH B 40 126 67 HOH HOH . 
F 4 HOH B 41 127 68 HOH HOH . 
F 4 HOH B 42 128 73 HOH HOH . 
F 4 HOH B 43 129 74 HOH HOH . 
F 4 HOH B 44 130 75 HOH HOH . 
F 4 HOH B 45 131 76 HOH HOH . 
F 4 HOH B 46 132 77 HOH HOH . 
F 4 HOH B 47 133 80 HOH HOH . 
F 4 HOH B 48 134 81 HOH HOH . 
F 4 HOH B 49 135 82 HOH HOH . 
F 4 HOH B 50 136 84 HOH HOH . 
F 4 HOH B 51 137 2 HOH HOH . 
F 4 HOH B 52 138 86 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               35.849 
_atom_site.Cartn_y               12.5 
_atom_site.Cartn_z               -17.721 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        48.9 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           86 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#