data_3M96 # _model_server_result.job_id FBfUVR4pY1NohmY5y6Ghpw _model_server_result.datetime_utc '2024-11-21 23:02:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m96 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":265}' # _entry.id 3M96 # _exptl.entry_id 3M96 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 460.753 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-{[(5-bromo-1H-benzimidazol-2-yl)sulfanyl]acetyl}-2-chlorobenzenesulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.14 _cell.angle_gamma 90 _cell.entry_id 3M96 _cell.length_a 42.05 _cell.length_b 40.921 _cell.length_c 71.468 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M96 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H11 Br Cl N3 O3 S2' _chem_comp.formula_weight 460.753 _chem_comp.id E38 _chem_comp.mon_nstd_flag . _chem_comp.name 5-{[(5-bromo-1H-benzimidazol-2-yl)sulfanyl]acetyl}-2-chlorobenzenesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 E38 sing 92 n y N1 C5 E38 sing 93 n y S10 C2 E38 sing 94 n n C2 N3 E38 doub 95 n y N3 C4 E38 sing 96 n y C5 C4 E38 doub 97 n y C4 C9 E38 sing 98 n y C6 C5 E38 sing 99 n y C6 C7 E38 doub 100 n y C6 H6 E38 sing 101 n n C7 C8 E38 sing 102 n y C7 H7 E38 sing 103 n n C8 C9 E38 doub 104 n y C8 BR14 E38 sing 105 n n C9 H9 E38 sing 106 n n S10 C11 E38 sing 107 n n C11 C12 E38 sing 108 n n C11 H11 E38 sing 109 n n C11 H11A E38 sing 110 n n O13 C12 E38 doub 111 n n C12 C15 E38 sing 112 n n C15 C20 E38 doub 113 n y C15 C16 E38 sing 114 n y C16 C17 E38 doub 115 n y C16 H16 E38 sing 116 n n C17 C18 E38 sing 117 n y C17 S21 E38 sing 118 n n C19 C18 E38 doub 119 n y C18 CL23 E38 sing 120 n n C20 C19 E38 sing 121 n y C19 H19 E38 sing 122 n n C20 H20 E38 sing 123 n n N25 S21 E38 sing 124 n n S21 O22 E38 doub 125 n n S21 O24 E38 doub 126 n n N25 HN25 E38 sing 127 n n N25 HN2A E38 sing 128 n n N1 HN1 E38 sing 129 n n # _atom_sites.entry_id 3M96 _atom_sites.fract_transf_matrix[1][1] 0.023781 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005993 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024438 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01443 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 262 1 ZN ZN . C 3 DMS A 1 263 1 DMS DMS . D 3 DMS A 1 264 2 DMS DMS . E 4 E38 A 1 265 1 E38 E38 . F 5 HOH A 1 126 126 HOH HOH . F 5 HOH A 2 266 1 HOH HOH . F 5 HOH A 3 267 2 HOH HOH . F 5 HOH A 4 268 3 HOH HOH . F 5 HOH A 5 269 4 HOH HOH . F 5 HOH A 6 270 5 HOH HOH . F 5 HOH A 7 271 6 HOH HOH . F 5 HOH A 8 272 7 HOH HOH . F 5 HOH A 9 273 8 HOH HOH . F 5 HOH A 10 274 9 HOH HOH . F 5 HOH A 11 275 10 HOH HOH . F 5 HOH A 12 276 11 HOH HOH . F 5 HOH A 13 277 12 HOH HOH . F 5 HOH A 14 278 13 HOH HOH . F 5 HOH A 15 279 14 HOH HOH . F 5 HOH A 16 280 15 HOH HOH . F 5 HOH A 17 281 16 HOH HOH . F 5 HOH A 18 282 17 HOH HOH . F 5 HOH A 19 283 18 HOH HOH . F 5 HOH A 20 284 19 HOH HOH . F 5 HOH A 21 285 20 HOH HOH . F 5 HOH A 22 286 21 HOH HOH . F 5 HOH A 23 287 22 HOH HOH . F 5 HOH A 24 288 23 HOH HOH . F 5 HOH A 25 289 24 HOH HOH . F 5 HOH A 26 290 25 HOH HOH . F 5 HOH A 27 291 26 HOH HOH . F 5 HOH A 28 292 27 HOH HOH . F 5 HOH A 29 293 28 HOH HOH . F 5 HOH A 30 294 29 HOH HOH . F 5 HOH A 31 295 30 HOH HOH . F 5 HOH A 32 296 31 HOH HOH . F 5 HOH A 33 297 32 HOH HOH . F 5 HOH A 34 298 33 HOH HOH . F 5 HOH A 35 299 34 HOH HOH . F 5 HOH A 36 300 35 HOH HOH . F 5 HOH A 37 301 36 HOH HOH . F 5 HOH A 38 302 37 HOH HOH . F 5 HOH A 39 303 38 HOH HOH . F 5 HOH A 40 304 39 HOH HOH . F 5 HOH A 41 305 40 HOH HOH . F 5 HOH A 42 306 41 HOH HOH . F 5 HOH A 43 307 42 HOH HOH . F 5 HOH A 44 308 43 HOH HOH . F 5 HOH A 45 309 44 HOH HOH . F 5 HOH A 46 310 45 HOH HOH . F 5 HOH A 47 311 46 HOH HOH . F 5 HOH A 48 312 47 HOH HOH . F 5 HOH A 49 313 48 HOH HOH . F 5 HOH A 50 314 49 HOH HOH . F 5 HOH A 51 315 50 HOH HOH . F 5 HOH A 52 316 51 HOH HOH . F 5 HOH A 53 317 52 HOH HOH . F 5 HOH A 54 318 53 HOH HOH . F 5 HOH A 55 319 54 HOH HOH . F 5 HOH A 56 320 55 HOH HOH . F 5 HOH A 57 321 56 HOH HOH . F 5 HOH A 58 322 57 HOH HOH . F 5 HOH A 59 323 58 HOH HOH . F 5 HOH A 60 324 59 HOH HOH . F 5 HOH A 61 325 60 HOH HOH . F 5 HOH A 62 326 61 HOH HOH . F 5 HOH A 63 327 62 HOH HOH . F 5 HOH A 64 328 63 HOH HOH . F 5 HOH A 65 329 64 HOH HOH . F 5 HOH A 66 330 65 HOH HOH . F 5 HOH A 67 331 66 HOH HOH . F 5 HOH A 68 332 67 HOH HOH . F 5 HOH A 69 333 68 HOH HOH . F 5 HOH A 70 334 69 HOH HOH . F 5 HOH A 71 335 70 HOH HOH . F 5 HOH A 72 336 71 HOH HOH . F 5 HOH A 73 337 72 HOH HOH . F 5 HOH A 74 338 73 HOH HOH . F 5 HOH A 75 339 74 HOH HOH . F 5 HOH A 76 340 75 HOH HOH . F 5 HOH A 77 341 76 HOH HOH . F 5 HOH A 78 342 77 HOH HOH . F 5 HOH A 79 343 78 HOH HOH . F 5 HOH A 80 344 79 HOH HOH . F 5 HOH A 81 345 80 HOH HOH . F 5 HOH A 82 346 81 HOH HOH . F 5 HOH A 83 347 82 HOH HOH . F 5 HOH A 84 348 83 HOH HOH . F 5 HOH A 85 349 84 HOH HOH . F 5 HOH A 86 350 85 HOH HOH . F 5 HOH A 87 351 86 HOH HOH . F 5 HOH A 88 352 87 HOH HOH . F 5 HOH A 89 353 88 HOH HOH . F 5 HOH A 90 354 89 HOH HOH . F 5 HOH A 91 355 90 HOH HOH . F 5 HOH A 92 356 91 HOH HOH . F 5 HOH A 93 357 92 HOH HOH . F 5 HOH A 94 358 93 HOH HOH . F 5 HOH A 95 359 94 HOH HOH . F 5 HOH A 96 360 95 HOH HOH . F 5 HOH A 97 361 96 HOH HOH . F 5 HOH A 98 362 97 HOH HOH . F 5 HOH A 99 363 98 HOH HOH . F 5 HOH A 100 364 99 HOH HOH . F 5 HOH A 101 365 100 HOH HOH . F 5 HOH A 102 366 101 HOH HOH . F 5 HOH A 103 367 102 HOH HOH . F 5 HOH A 104 368 103 HOH HOH . F 5 HOH A 105 369 104 HOH HOH . F 5 HOH A 106 370 105 HOH HOH . F 5 HOH A 107 371 106 HOH HOH . F 5 HOH A 108 372 107 HOH HOH . F 5 HOH A 109 373 108 HOH HOH . F 5 HOH A 110 374 109 HOH HOH . F 5 HOH A 111 375 110 HOH HOH . F 5 HOH A 112 376 111 HOH HOH . F 5 HOH A 113 377 112 HOH HOH . F 5 HOH A 114 378 113 HOH HOH . F 5 HOH A 115 379 114 HOH HOH . F 5 HOH A 116 380 115 HOH HOH . F 5 HOH A 117 381 116 HOH HOH . F 5 HOH A 118 382 117 HOH HOH . F 5 HOH A 119 383 118 HOH HOH . F 5 HOH A 120 384 119 HOH HOH . F 5 HOH A 121 385 120 HOH HOH . F 5 HOH A 122 386 121 HOH HOH . F 5 HOH A 123 387 122 HOH HOH . F 5 HOH A 124 388 123 HOH HOH . F 5 HOH A 125 389 124 HOH HOH . F 5 HOH A 126 390 125 HOH HOH . F 5 HOH A 127 391 127 HOH HOH . F 5 HOH A 128 392 128 HOH HOH . F 5 HOH A 129 393 129 HOH HOH . F 5 HOH A 130 394 130 HOH HOH . F 5 HOH A 131 395 131 HOH HOH . F 5 HOH A 132 396 132 HOH HOH . F 5 HOH A 133 397 133 HOH HOH . F 5 HOH A 134 398 134 HOH HOH . F 5 HOH A 135 399 135 HOH HOH . F 5 HOH A 136 400 136 HOH HOH . F 5 HOH A 137 401 137 HOH HOH . F 5 HOH A 138 402 138 HOH HOH . F 5 HOH A 139 403 139 HOH HOH . F 5 HOH A 140 404 140 HOH HOH . F 5 HOH A 141 405 141 HOH HOH . F 5 HOH A 142 406 142 HOH HOH . F 5 HOH A 143 407 143 HOH HOH . F 5 HOH A 144 408 144 HOH HOH . F 5 HOH A 145 409 145 HOH HOH . F 5 HOH A 146 410 146 HOH HOH . F 5 HOH A 147 411 147 HOH HOH . F 5 HOH A 148 412 148 HOH HOH . F 5 HOH A 149 413 149 HOH HOH . F 5 HOH A 150 414 150 HOH HOH . F 5 HOH A 151 415 151 HOH HOH . F 5 HOH A 152 416 152 HOH HOH . F 5 HOH A 153 417 153 HOH HOH . F 5 HOH A 154 418 154 HOH HOH . F 5 HOH A 155 419 155 HOH HOH . F 5 HOH A 156 420 156 HOH HOH . F 5 HOH A 157 421 157 HOH HOH . F 5 HOH A 158 422 158 HOH HOH . F 5 HOH A 159 423 159 HOH HOH . F 5 HOH A 160 424 160 HOH HOH . F 5 HOH A 161 425 161 HOH HOH . F 5 HOH A 162 426 162 HOH HOH . F 5 HOH A 163 427 163 HOH HOH . F 5 HOH A 164 428 164 HOH HOH . F 5 HOH A 165 429 165 HOH HOH . F 5 HOH A 166 430 166 HOH HOH . F 5 HOH A 167 431 167 HOH HOH . F 5 HOH A 168 432 168 HOH HOH . F 5 HOH A 169 433 169 HOH HOH . F 5 HOH A 170 434 170 HOH HOH . F 5 HOH A 171 435 171 HOH HOH . F 5 HOH A 172 436 172 HOH HOH . F 5 HOH A 173 437 173 HOH HOH . F 5 HOH A 174 438 174 HOH HOH . F 5 HOH A 175 439 175 HOH HOH . F 5 HOH A 176 440 176 HOH HOH . F 5 HOH A 177 441 178 HOH HOH . F 5 HOH A 178 442 180 HOH HOH . F 5 HOH A 179 443 181 HOH HOH . F 5 HOH A 180 444 182 HOH HOH . F 5 HOH A 181 445 183 HOH HOH . F 5 HOH A 182 446 184 HOH HOH . F 5 HOH A 183 447 185 HOH HOH . F 5 HOH A 184 448 186 HOH HOH . F 5 HOH A 185 449 187 HOH HOH . F 5 HOH A 186 450 188 HOH HOH . F 5 HOH A 187 451 189 HOH HOH . F 5 HOH A 188 452 190 HOH HOH . F 5 HOH A 189 453 191 HOH HOH . F 5 HOH A 190 454 192 HOH HOH . F 5 HOH A 191 455 193 HOH HOH . F 5 HOH A 192 456 194 HOH HOH . F 5 HOH A 193 457 195 HOH HOH . F 5 HOH A 194 458 196 HOH HOH . F 5 HOH A 195 459 197 HOH HOH . F 5 HOH A 196 460 198 HOH HOH . F 5 HOH A 197 461 199 HOH HOH . F 5 HOH A 198 462 200 HOH HOH . F 5 HOH A 199 463 201 HOH HOH . F 5 HOH A 200 464 202 HOH HOH . F 5 HOH A 201 465 203 HOH HOH . F 5 HOH A 202 466 205 HOH HOH . F 5 HOH A 203 467 206 HOH HOH . F 5 HOH A 204 468 207 HOH HOH . F 5 HOH A 205 469 208 HOH HOH . F 5 HOH A 206 470 209 HOH HOH . F 5 HOH A 207 471 210 HOH HOH . F 5 HOH A 208 472 211 HOH HOH . F 5 HOH A 209 473 212 HOH HOH . F 5 HOH A 210 474 213 HOH HOH . F 5 HOH A 211 475 214 HOH HOH . F 5 HOH A 212 476 215 HOH HOH . F 5 HOH A 213 477 216 HOH HOH . F 5 HOH A 214 478 217 HOH HOH . F 5 HOH A 215 479 218 HOH HOH . F 5 HOH A 216 480 219 HOH HOH . F 5 HOH A 217 481 220 HOH HOH . F 5 HOH A 218 482 221 HOH HOH . F 5 HOH A 219 483 222 HOH HOH . F 5 HOH A 220 484 223 HOH HOH . F 5 HOH A 221 485 224 HOH HOH . F 5 HOH A 222 486 225 HOH HOH . F 5 HOH A 223 487 226 HOH HOH . F 5 HOH A 224 488 227 HOH HOH . F 5 HOH A 225 489 228 HOH HOH . F 5 HOH A 226 490 229 HOH HOH . F 5 HOH A 227 491 230 HOH HOH . F 5 HOH A 228 492 231 HOH HOH . F 5 HOH A 229 493 232 HOH HOH . F 5 HOH A 230 494 233 HOH HOH . F 5 HOH A 231 495 234 HOH HOH . F 5 HOH A 232 496 235 HOH HOH . F 5 HOH A 233 497 236 HOH HOH . F 5 HOH A 234 498 237 HOH HOH . F 5 HOH A 235 499 238 HOH HOH . F 5 HOH A 236 500 239 HOH HOH . F 5 HOH A 237 501 240 HOH HOH . F 5 HOH A 238 502 241 HOH HOH . F 5 HOH A 239 503 242 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 E38 . . . E 4 -0.271 4.625 11.03 1 34.7 ? N1 E38 265 A 1 HETATM 2 C C2 E38 . . . E 4 -1.194 3.784 11.527 1 32.94 ? C2 E38 265 A 1 HETATM 3 N N3 E38 . . . E 4 -1.817 4.303 12.613 1 34.67 ? N3 E38 265 A 1 HETATM 4 C C4 E38 . . . E 4 -1.288 5.504 12.78 1 33.56 ? C4 E38 265 A 1 HETATM 5 C C5 E38 . . . E 4 -0.313 5.7 11.82 1 32.95 ? C5 E38 265 A 1 HETATM 6 C C6 E38 . . . E 4 0.466 6.874 11.748 1 33.75 ? C6 E38 265 A 1 HETATM 7 C C7 E38 . . . E 4 0.204 7.852 12.721 1 33.53 ? C7 E38 265 A 1 HETATM 8 C C8 E38 . . . E 4 -0.823 7.576 13.676 1 32.27 ? C8 E38 265 A 1 HETATM 9 C C9 E38 . . . E 4 -1.608 6.448 13.731 1 31.48 ? C9 E38 265 A 1 HETATM 10 S S10 E38 . . . E 4 -1.617 2.179 10.866 1 30.53 ? S10 E38 265 A 1 HETATM 11 C C11 E38 . . . E 4 -3 1.76 12.034 1 17.43 ? C11 E38 265 A 1 HETATM 12 C C12 E38 . . . E 4 -4.165 2.75 12.114 1 18.61 ? C12 E38 265 A 1 HETATM 13 O O13 E38 . . . E 4 -4.632 3.346 11.077 1 24.13 ? O13 E38 265 A 1 HETATM 14 BR BR14 E38 . . . E 4 -1.297 8.77 15.077 1 33.19 ? BR14 E38 265 A 1 HETATM 15 C C15 E38 . . . E 4 -4.767 3.055 13.523 1 14.39 ? C15 E38 265 A 1 HETATM 16 C C16 E38 . . . E 4 -5 1.987 14.421 1 10.42 ? C16 E38 265 A 1 HETATM 17 C C17 E38 . . . E 4 -5.545 2.198 15.629 1 9.49 ? C17 E38 265 A 1 HETATM 18 C C18 E38 . . . E 4 -5.972 3.466 16.013 1 11.58 ? C18 E38 265 A 1 HETATM 19 C C19 E38 . . . E 4 -5.752 4.541 15.132 1 12.01 ? C19 E38 265 A 1 HETATM 20 C C20 E38 . . . E 4 -5.19 4.326 13.926 1 14.36 ? C20 E38 265 A 1 HETATM 21 S S21 E38 . . . E 4 -5.894 0.773 16.687 1 8.62 ? S21 E38 265 A 1 HETATM 22 O O22 E38 . . . E 4 -7.393 0.687 16.694 1 9.07 ? O22 E38 265 A 1 HETATM 23 CL CL23 E38 . . . E 4 -6.703 3.798 17.464 1 13.17 ? CL23 E38 265 A 1 HETATM 24 O O24 E38 . . . E 4 -5.265 1.042 17.969 1 7.89 ? O24 E38 265 A 1 HETATM 25 N N25 E38 . . . E 4 -5.285 -0.56 16 1 6.38 ? N25 E38 265 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #