data_3M99 # _model_server_result.job_id dQ2kgpOo5Nhh6LorIU0nlA _model_server_result.datetime_utc '2025-02-05 09:56:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m99 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":100}' # _entry.id 3M99 # _exptl.entry_id 3M99 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.09 _cell.angle_gamma 90 _cell.entry_id 3M99 _cell.length_a 64.424 _cell.length_b 103.519 _cell.length_c 70.35 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M99 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 A SG CYS 4 A CYS 4 1_555 A SG CYS 99 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 A SG CYS 60 A CYS 60 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? disulf ? disulf4 A SG CYS 174 A CYS 174 1_555 A SG CYS 185 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf5 B SG CYS 76 B CYS 76 1_555 B SG CYS 92 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc1 A SG CYS 4 A CYS 4 1_555 E ZN ZN . A ZN 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc2 A ND1 HIS 6 A HIS 6 1_555 E ZN ZN . A ZN 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc3 A SG CYS 46 A CYS 46 1_555 F ZN ZN . A ZN 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc4 A SG CYS 49 A CYS 49 1_555 F ZN ZN . A ZN 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc5 A SG CYS 60 A CYS 60 1_555 G ZN ZN . A ZN 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc6 A SG CYS 63 A CYS 63 1_555 G ZN ZN . A ZN 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc7 A SG CYS 68 A CYS 68 1_555 F ZN ZN . A ZN 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc8 A ND1 HIS 73 A HIS 73 1_555 F ZN ZN . A ZN 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc9 A NE2 HIS 77 A HIS 77 1_555 G ZN ZN . A ZN 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc10 A ND1 HIS 83 A HIS 83 1_555 G ZN ZN . A ZN 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc11 A SG CYS 99 A CYS 99 1_555 E ZN ZN . A ZN 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc12 A N CYS 99 A CYS 99 1_555 E ZN ZN . A ZN 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc13 A NE2 HIS 170 A HIS 170 1_555 H ZN ZN . A ZN 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc14 A SG CYS 182 A CYS 182 1_555 H ZN ZN . A ZN 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc15 A SG CYS 185 A CYS 185 1_555 H ZN ZN . A ZN 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc16 A ND1 HIS 250 A HIS 250 1_555 I ZN ZN . A ZN 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc17 A SG CYS 271 A CYS 271 1_555 I ZN ZN . A ZN 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc18 A SG CYS 273 A CYS 273 1_555 I ZN ZN . A ZN 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc19 A ND1 HIS 276 A HIS 276 1_555 I ZN ZN . A ZN 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc20 B SG CYS 73 B CYS 73 1_555 J ZN ZN . B ZN 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc21 B NE2 HIS 88 B HIS 88 1_555 J ZN ZN . B ZN 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc22 B SG CYS 92 B CYS 92 1_555 J ZN ZN . B ZN 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc23 D SG CYS 78 D CYS 78 1_555 K ZN ZN . D ZN 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc24 D SG CYS 81 D CYS 81 1_555 K ZN ZN . D ZN 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc25 D NE2 HIS 93 D HIS 93 1_555 K ZN ZN . D ZN 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc26 D SG CYS 98 D CYS 98 1_555 K ZN ZN . D ZN 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3M99 _atom_sites.fract_transf_matrix[1][1] 0.015522 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00507 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00966 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014954 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 ZN A 1 472 1 ZN ZN . F 5 ZN A 1 473 2 ZN ZN . G 5 ZN A 1 474 3 ZN ZN . H 5 ZN A 1 475 4 ZN ZN . I 5 ZN A 1 476 5 ZN ZN . J 5 ZN B 1 100 6 ZN ZN . K 5 ZN D 1 105 7 ZN ZN . L 6 HOH A 1 477 1 HOH HOH . L 6 HOH A 2 478 2 HOH HOH . L 6 HOH A 3 479 3 HOH HOH . L 6 HOH A 4 480 4 HOH HOH . L 6 HOH A 5 481 5 HOH HOH . L 6 HOH A 6 482 6 HOH HOH . L 6 HOH A 7 483 7 HOH HOH . L 6 HOH A 8 484 8 HOH HOH . L 6 HOH A 9 485 9 HOH HOH . L 6 HOH A 10 486 10 HOH HOH . L 6 HOH A 11 487 11 HOH HOH . L 6 HOH A 12 488 12 HOH HOH . L 6 HOH A 13 489 13 HOH HOH . L 6 HOH A 14 490 14 HOH HOH . L 6 HOH A 15 491 15 HOH HOH . L 6 HOH A 16 492 16 HOH HOH . L 6 HOH A 17 493 17 HOH HOH . L 6 HOH A 18 494 18 HOH HOH . L 6 HOH A 19 495 19 HOH HOH . L 6 HOH A 20 496 21 HOH HOH . L 6 HOH A 21 497 22 HOH HOH . L 6 HOH A 22 498 23 HOH HOH . L 6 HOH A 23 499 24 HOH HOH . L 6 HOH A 24 500 25 HOH HOH . L 6 HOH A 25 501 28 HOH HOH . L 6 HOH A 26 502 30 HOH HOH . L 6 HOH A 27 503 32 HOH HOH . L 6 HOH A 28 504 33 HOH HOH . L 6 HOH A 29 505 34 HOH HOH . L 6 HOH A 30 506 37 HOH HOH . L 6 HOH A 31 507 38 HOH HOH . L 6 HOH A 32 508 41 HOH HOH . M 6 HOH B 1 101 31 HOH HOH . M 6 HOH B 2 102 36 HOH HOH . N 6 HOH C 1 97 29 HOH HOH . N 6 HOH C 2 98 40 HOH HOH . O 6 HOH D 1 106 20 HOH HOH . O 6 HOH D 2 107 26 HOH HOH . O 6 HOH D 3 108 27 HOH HOH . O 6 HOH D 4 109 35 HOH HOH . O 6 HOH D 5 110 39 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 5 _atom_site.Cartn_x 30.886 _atom_site.Cartn_y 3.163 _atom_site.Cartn_z 15.853 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 146.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 100 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #