data_3M9I # _model_server_result.job_id NuGgWywAejrNA7ELdcD49g _model_server_result.datetime_utc '2025-03-04 13:27:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m9i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 3M9I # _exptl.entry_id 3M9I _exptl.method 'ELECTRON CRYSTALLOGRAPHY' # _entity.details ? _entity.formula_weight 748.065 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-Distearoyl-sn-glycerophosphoethanolamine _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3M9I _cell.length_a 65.5 _cell.length_b 65.5 _cell.length_c 200 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M9I _symmetry.cell_setting ? _symmetry.Int_Tables_number 89 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C41 H82 N O8 P' _chem_comp.formula_weight 748.065 _chem_comp.id 3PE _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-Distearoyl-sn-glycerophosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLETHANOLAMINE;1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O11 3PE sing 1 n n P O12 3PE sing 2 n n P O13 3PE sing 3 n n P O14 3PE doub 4 n n N C12 3PE sing 5 n n N HN1 3PE sing 6 n n N HN2 3PE sing 7 n n O11 C1 3PE sing 8 n n O13 C11 3PE sing 9 n n C11 C12 3PE sing 10 n n C11 H111 3PE sing 11 n n C11 H112 3PE sing 12 n n C12 H121 3PE sing 13 n n C12 H122 3PE sing 14 n n C1 C2 3PE sing 15 n n C1 H11 3PE sing 16 n n C1 H12 3PE sing 17 n n C2 C3 3PE sing 18 n n C2 O21 3PE sing 19 n n C2 H2 3PE sing 20 n n C3 O31 3PE sing 21 n n C3 H31 3PE sing 22 n n C3 H32 3PE sing 23 n n O31 C31 3PE sing 24 n n O32 C31 3PE doub 25 n n C31 C32 3PE sing 26 n n C32 C33 3PE sing 27 n n C32 H321 3PE sing 28 n n C32 H322 3PE sing 29 n n C33 C34 3PE sing 30 n n C33 H331 3PE sing 31 n n C33 H332 3PE sing 32 n n C34 C35 3PE sing 33 n n C34 H341 3PE sing 34 n n C34 H342 3PE sing 35 n n C35 C36 3PE sing 36 n n C35 H351 3PE sing 37 n n C35 H352 3PE sing 38 n n C36 C37 3PE sing 39 n n C36 H361 3PE sing 40 n n C36 H362 3PE sing 41 n n C37 C38 3PE sing 42 n n C37 H371 3PE sing 43 n n C37 H372 3PE sing 44 n n C38 C39 3PE sing 45 n n C38 H381 3PE sing 46 n n C38 H382 3PE sing 47 n n C39 C3A 3PE sing 48 n n C39 H391 3PE sing 49 n n C39 H392 3PE sing 50 n n C3A C3B 3PE sing 51 n n C3A H3A1 3PE sing 52 n n C3A H3A2 3PE sing 53 n n C3B C3C 3PE sing 54 n n C3B H3B1 3PE sing 55 n n C3B H3B2 3PE sing 56 n n C3C C3D 3PE sing 57 n n C3C H3C1 3PE sing 58 n n C3C H3C2 3PE sing 59 n n C3D C3E 3PE sing 60 n n C3D H3D1 3PE sing 61 n n C3D H3D2 3PE sing 62 n n C3E C3F 3PE sing 63 n n C3E H3E1 3PE sing 64 n n C3E H3E2 3PE sing 65 n n C3F C3G 3PE sing 66 n n C3F H3F1 3PE sing 67 n n C3F H3F2 3PE sing 68 n n C3G C3H 3PE sing 69 n n C3G H3G1 3PE sing 70 n n C3G H3G2 3PE sing 71 n n C3H C3I 3PE sing 72 n n C3H H3H1 3PE sing 73 n n C3H H3H2 3PE sing 74 n n C3I H3I1 3PE sing 75 n n C3I H3I2 3PE sing 76 n n C3I H3I3 3PE sing 77 n n O21 C21 3PE sing 78 n n O22 C21 3PE doub 79 n n C21 C22 3PE sing 80 n n C22 C23 3PE sing 81 n n C22 H221 3PE sing 82 n n C22 H222 3PE sing 83 n n C23 C24 3PE sing 84 n n C23 H231 3PE sing 85 n n C23 H232 3PE sing 86 n n C24 C25 3PE sing 87 n n C24 H241 3PE sing 88 n n C24 H242 3PE sing 89 n n C25 C26 3PE sing 90 n n C25 H251 3PE sing 91 n n C25 H252 3PE sing 92 n n C26 C27 3PE sing 93 n n C26 H261 3PE sing 94 n n C26 H262 3PE sing 95 n n C27 C28 3PE sing 96 n n C27 H271 3PE sing 97 n n C27 H272 3PE sing 98 n n C28 C29 3PE sing 99 n n C28 H281 3PE sing 100 n n C28 H282 3PE sing 101 n n C29 C2A 3PE sing 102 n n C29 H291 3PE sing 103 n n C29 H292 3PE sing 104 n n C2A C2B 3PE sing 105 n n C2A H2A1 3PE sing 106 n n C2A H2A2 3PE sing 107 n n C2B C2C 3PE sing 108 n n C2B H2B1 3PE sing 109 n n C2B H2B2 3PE sing 110 n n C2C C2D 3PE sing 111 n n C2C H2C1 3PE sing 112 n n C2C H2C2 3PE sing 113 n n C2D C2E 3PE sing 114 n n C2D H2D1 3PE sing 115 n n C2D H2D2 3PE sing 116 n n C2E C2F 3PE sing 117 n n C2E H2E1 3PE sing 118 n n C2E H2E2 3PE sing 119 n n C2F C2G 3PE sing 120 n n C2F H2F1 3PE sing 121 n n C2F H2F2 3PE sing 122 n n C2G C2H 3PE sing 123 n n C2G H2G1 3PE sing 124 n n C2G H2G2 3PE sing 125 n n C2H C2I 3PE sing 126 n n C2H H2H1 3PE sing 127 n n C2H H2H2 3PE sing 128 n n C2I H2I1 3PE sing 129 n n C2I H2I2 3PE sing 130 n n C2I H2I3 3PE sing 131 n n O12 H1 3PE sing 132 n n # _atom_sites.entry_id 3M9I _atom_sites.fract_transf_matrix[1][1] 0.015267 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015267 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3PE A 1 301 301 3PE 3PE . C 2 3PE A 1 302 302 3PE 3PE . D 2 3PE A 1 303 303 3PE 3PE . E 2 3PE A 1 304 304 3PE 3PE . F 2 3PE A 1 305 305 3PE 3PE . G 2 3PE A 1 306 306 3PE 3PE . H 2 3PE A 1 307 307 3PE 3PE . I 3 HOH A 1 1 1 HOH HOH . I 3 HOH A 2 2 2 HOH HOH . I 3 HOH A 3 3 3 HOH HOH . I 3 HOH A 4 4 4 HOH HOH . I 3 HOH A 5 5 5 HOH HOH . I 3 HOH A 6 6 6 HOH HOH . I 3 HOH A 7 227 7 HOH HOH . I 3 HOH A 8 228 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 3PE . . . C 2 12.124 -1.73 4.279 1 84.62 ? P 3PE 302 A 1 HETATM 2 N N 3PE . . . C 2 8.585 -0.186 1.339 1 78.95 ? N 3PE 302 A 1 HETATM 3 O O11 3PE . . . C 2 12.257 -0.504 5.315 1 84.94 ? O11 3PE 302 A 1 HETATM 4 O O12 3PE . . . C 2 10.905 -2.538 4.658 1 85.88 ? O12 3PE 302 A 1 HETATM 5 O O13 3PE . . . C 2 11.82 -0.983 2.886 1 83.66 ? O13 3PE 302 A 1 HETATM 6 O O14 3PE . . . C 2 13.47 -2.405 4.17 1 84.68 ? O14 3PE 302 A 1 HETATM 7 C C11 3PE . . . C 2 10.642 -1.287 2.143 1 80.38 ? C11 3PE 302 A 1 HETATM 8 C C12 3PE . . . C 2 10.038 0.002 1.598 1 79.61 ? C12 3PE 302 A 1 HETATM 9 C C1 3PE . . . C 2 12.218 -0.737 6.721 1 84.95 ? C1 3PE 302 A 1 HETATM 10 C C2 3PE . . . C 2 12.579 0.547 7.458 1 85.28 ? C2 3PE 302 A 1 HETATM 11 C C3 3PE . . . C 2 12.102 1.748 6.652 1 87.1 ? C3 3PE 302 A 1 HETATM 12 O O31 3PE . . . C 2 10.913 2.273 7.239 1 86.06 ? O31 3PE 302 A 1 HETATM 13 O O32 3PE . . . C 2 11.381 4.318 6.764 1 84.98 ? O32 3PE 302 A 1 HETATM 14 C C31 3PE . . . C 2 10.849 3.593 7.588 1 85.8 ? C31 3PE 302 A 1 HETATM 15 C C32 3PE . . . C 2 10.191 4.091 8.853 1 83.4 ? C32 3PE 302 A 1 HETATM 16 C C33 3PE . . . C 2 11.232 4.774 9.732 1 79.18 ? C33 3PE 302 A 1 HETATM 17 C C34 3PE . . . C 2 10.565 5.63 10.802 1 74.09 ? C34 3PE 302 A 1 HETATM 18 C C35 3PE . . . C 2 11.356 5.59 12.105 1 71.7 ? C35 3PE 302 A 1 HETATM 19 C C36 3PE . . . C 2 10.441 5.303 13.29 1 70.58 ? C36 3PE 302 A 1 HETATM 20 C C37 3PE . . . C 2 10.359 6.508 14.22 1 70.62 ? C37 3PE 302 A 1 HETATM 21 C C38 3PE . . . C 2 10.79 6.136 15.634 1 71.94 ? C38 3PE 302 A 1 HETATM 22 C C39 3PE . . . C 2 9.628 6.27 16.611 1 73.24 ? C39 3PE 302 A 1 HETATM 23 C C3A 3PE . . . C 2 9.93 7.318 17.677 1 72.34 ? C3A 3PE 302 A 1 HETATM 24 C C3B 3PE . . . C 2 8.649 7.989 18.16 1 72.98 ? C3B 3PE 302 A 1 HETATM 25 C C3C 3PE . . . C 2 8.811 8.514 19.582 1 74.41 ? C3C 3PE 302 A 1 HETATM 26 C C3D 3PE . . . C 2 7.583 8.192 20.425 1 76.04 ? C3D 3PE 302 A 1 HETATM 27 C C3E 3PE . . . C 2 6.77 9.45 20.708 1 76.39 ? C3E 3PE 302 A 1 HETATM 28 O O21 3PE . . . C 2 11.95 0.553 8.738 1 82.7 ? O21 3PE 302 A 1 HETATM 29 O O22 3PE . . . C 2 13.309 -0.938 9.785 1 79.71 ? O22 3PE 302 A 1 HETATM 30 C C21 3PE . . . C 2 12.812 0.174 9.729 1 78.89 ? C21 3PE 302 A 1 HETATM 31 C C22 3PE . . . C 2 13.073 1.275 10.73 1 75.18 ? C22 3PE 302 A 1 HETATM 32 C C23 3PE . . . C 2 12.334 0.967 12.027 1 72.77 ? C23 3PE 302 A 1 HETATM 33 C C24 3PE . . . C 2 13.274 1.049 13.224 1 71 ? C24 3PE 302 A 1 HETATM 34 C C25 3PE . . . C 2 12.505 1.36 14.502 1 68.07 ? C25 3PE 302 A 1 HETATM 35 C C26 3PE . . . C 2 13.455 1.733 15.634 1 66.08 ? C26 3PE 302 A 1 HETATM 36 C C27 3PE . . . C 2 13.017 1.096 16.948 1 67.04 ? C27 3PE 302 A 1 HETATM 37 C C28 3PE . . . C 2 13.111 2.094 18.096 1 67.62 ? C28 3PE 302 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 37 #