data_3M9K # _model_server_result.job_id NNZVJzPonLkPCggH9qVD1Q _model_server_result.datetime_utc '2025-02-05 08:47:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3m9k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":109}' # _entry.id 3M9K # _exptl.entry_id 3M9K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3M9K _cell.length_a 125.62 _cell.length_b 125.62 _cell.length_c 33.55 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3M9K _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,H 1 1 B,D,E,F,G,I 2 1 A,B,C,D,E,F,G,H,I 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 125.62 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 32 A CYS 32 1_555 A SG CYS 35 A CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? disulf ? disulf2 A SG CYS 62 A CYS 62 1_555 B SG CYS 62 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf3 B SG CYS 32 B CYS 32 1_555 B SG CYS 35 B CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 280 n n S O2 SO4 doub 281 n n S O3 SO4 sing 282 n n S O4 SO4 sing 283 n n # _atom_sites.entry_id 3M9K _atom_sites.fract_transf_matrix[1][1] 0.007961 _atom_sites.fract_transf_matrix[1][2] 0.004596 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 106 106 SO4 SO4 . D 3 D1D B 1 106 106 D1D D1D . E 2 SO4 B 1 107 107 SO4 SO4 . F 2 SO4 B 1 108 108 SO4 SO4 . G 2 SO4 B 1 109 109 SO4 SO4 . H 4 HOH A 1 107 107 HOH HOH . H 4 HOH A 2 108 108 HOH HOH . H 4 HOH A 3 109 109 HOH HOH . H 4 HOH A 4 110 110 HOH HOH . H 4 HOH A 5 111 111 HOH HOH . H 4 HOH A 6 112 112 HOH HOH . H 4 HOH A 7 113 113 HOH HOH . H 4 HOH A 8 114 114 HOH HOH . H 4 HOH A 9 115 115 HOH HOH . H 4 HOH A 10 116 116 HOH HOH . H 4 HOH A 11 117 117 HOH HOH . H 4 HOH A 12 118 118 HOH HOH . H 4 HOH A 13 119 119 HOH HOH . H 4 HOH A 14 120 120 HOH HOH . H 4 HOH A 15 121 121 HOH HOH . H 4 HOH A 16 122 122 HOH HOH . H 4 HOH A 17 123 123 HOH HOH . H 4 HOH A 18 124 124 HOH HOH . H 4 HOH A 19 125 125 HOH HOH . H 4 HOH A 20 126 126 HOH HOH . H 4 HOH A 21 127 127 HOH HOH . H 4 HOH A 22 128 128 HOH HOH . H 4 HOH A 23 129 129 HOH HOH . H 4 HOH A 24 130 130 HOH HOH . H 4 HOH A 25 131 131 HOH HOH . H 4 HOH A 26 132 132 HOH HOH . H 4 HOH A 27 133 133 HOH HOH . H 4 HOH A 28 134 134 HOH HOH . H 4 HOH A 29 135 135 HOH HOH . H 4 HOH A 30 136 136 HOH HOH . H 4 HOH A 31 137 137 HOH HOH . H 4 HOH A 32 138 138 HOH HOH . H 4 HOH A 33 139 139 HOH HOH . H 4 HOH A 34 140 140 HOH HOH . H 4 HOH A 35 141 141 HOH HOH . H 4 HOH A 36 142 142 HOH HOH . H 4 HOH A 37 143 143 HOH HOH . H 4 HOH A 38 144 144 HOH HOH . H 4 HOH A 39 145 145 HOH HOH . H 4 HOH A 40 146 146 HOH HOH . H 4 HOH A 41 147 147 HOH HOH . H 4 HOH A 42 148 148 HOH HOH . H 4 HOH A 43 149 149 HOH HOH . H 4 HOH A 44 150 150 HOH HOH . H 4 HOH A 45 151 151 HOH HOH . H 4 HOH A 46 152 152 HOH HOH . H 4 HOH A 47 153 153 HOH HOH . H 4 HOH A 48 154 154 HOH HOH . H 4 HOH A 49 155 155 HOH HOH . H 4 HOH A 50 156 156 HOH HOH . H 4 HOH A 51 157 157 HOH HOH . H 4 HOH A 52 158 158 HOH HOH . H 4 HOH A 53 159 159 HOH HOH . H 4 HOH A 54 160 160 HOH HOH . H 4 HOH A 55 161 161 HOH HOH . H 4 HOH A 56 162 162 HOH HOH . H 4 HOH A 57 163 163 HOH HOH . H 4 HOH A 58 164 164 HOH HOH . H 4 HOH A 59 165 165 HOH HOH . H 4 HOH A 60 166 166 HOH HOH . H 4 HOH A 61 167 167 HOH HOH . H 4 HOH A 62 168 168 HOH HOH . H 4 HOH A 63 169 169 HOH HOH . H 4 HOH A 64 170 170 HOH HOH . H 4 HOH A 65 171 171 HOH HOH . H 4 HOH A 66 172 172 HOH HOH . H 4 HOH A 67 173 173 HOH HOH . H 4 HOH A 68 174 174 HOH HOH . H 4 HOH A 69 175 175 HOH HOH . H 4 HOH A 70 176 176 HOH HOH . H 4 HOH A 71 177 177 HOH HOH . H 4 HOH A 72 178 178 HOH HOH . H 4 HOH A 73 179 179 HOH HOH . H 4 HOH A 74 180 180 HOH HOH . H 4 HOH A 75 181 181 HOH HOH . H 4 HOH A 76 182 182 HOH HOH . H 4 HOH A 77 183 183 HOH HOH . H 4 HOH A 78 184 184 HOH HOH . H 4 HOH A 79 185 185 HOH HOH . H 4 HOH A 80 186 186 HOH HOH . H 4 HOH A 81 187 187 HOH HOH . H 4 HOH A 82 188 188 HOH HOH . H 4 HOH A 83 189 189 HOH HOH . H 4 HOH A 84 190 190 HOH HOH . I 4 HOH B 1 110 110 HOH HOH . I 4 HOH B 2 111 111 HOH HOH . I 4 HOH B 3 112 112 HOH HOH . I 4 HOH B 4 113 113 HOH HOH . I 4 HOH B 5 114 114 HOH HOH . I 4 HOH B 6 115 115 HOH HOH . I 4 HOH B 7 116 116 HOH HOH . I 4 HOH B 8 117 117 HOH HOH . I 4 HOH B 9 118 118 HOH HOH . I 4 HOH B 10 119 119 HOH HOH . I 4 HOH B 11 120 120 HOH HOH . I 4 HOH B 12 121 121 HOH HOH . I 4 HOH B 13 122 122 HOH HOH . I 4 HOH B 14 123 123 HOH HOH . I 4 HOH B 15 124 124 HOH HOH . I 4 HOH B 16 125 125 HOH HOH . I 4 HOH B 17 126 126 HOH HOH . I 4 HOH B 18 127 127 HOH HOH . I 4 HOH B 19 128 128 HOH HOH . I 4 HOH B 20 129 129 HOH HOH . I 4 HOH B 21 130 130 HOH HOH . I 4 HOH B 22 131 131 HOH HOH . I 4 HOH B 23 132 132 HOH HOH . I 4 HOH B 24 133 133 HOH HOH . I 4 HOH B 25 134 134 HOH HOH . I 4 HOH B 26 135 135 HOH HOH . I 4 HOH B 27 136 136 HOH HOH . I 4 HOH B 28 137 137 HOH HOH . I 4 HOH B 29 138 138 HOH HOH . I 4 HOH B 30 139 139 HOH HOH . I 4 HOH B 31 140 140 HOH HOH . I 4 HOH B 32 141 141 HOH HOH . I 4 HOH B 33 142 142 HOH HOH . I 4 HOH B 34 143 143 HOH HOH . I 4 HOH B 35 144 144 HOH HOH . I 4 HOH B 36 145 145 HOH HOH . I 4 HOH B 37 146 146 HOH HOH . I 4 HOH B 38 147 147 HOH HOH . I 4 HOH B 39 148 148 HOH HOH . I 4 HOH B 40 149 149 HOH HOH . I 4 HOH B 41 150 150 HOH HOH . I 4 HOH B 42 151 151 HOH HOH . I 4 HOH B 43 152 152 HOH HOH . I 4 HOH B 44 153 153 HOH HOH . I 4 HOH B 45 154 154 HOH HOH . I 4 HOH B 46 155 155 HOH HOH . I 4 HOH B 47 156 156 HOH HOH . I 4 HOH B 48 157 157 HOH HOH . I 4 HOH B 49 158 158 HOH HOH . I 4 HOH B 50 159 159 HOH HOH . I 4 HOH B 51 160 160 HOH HOH . I 4 HOH B 52 161 161 HOH HOH . I 4 HOH B 53 162 162 HOH HOH . I 4 HOH B 54 163 163 HOH HOH . I 4 HOH B 55 164 164 HOH HOH . I 4 HOH B 56 165 165 HOH HOH . I 4 HOH B 57 166 166 HOH HOH . I 4 HOH B 58 167 167 HOH HOH . I 4 HOH B 59 168 168 HOH HOH . I 4 HOH B 60 169 169 HOH HOH . I 4 HOH B 61 170 170 HOH HOH . I 4 HOH B 62 171 171 HOH HOH . I 4 HOH B 63 172 172 HOH HOH . I 4 HOH B 64 173 173 HOH HOH . I 4 HOH B 65 174 174 HOH HOH . I 4 HOH B 66 175 175 HOH HOH . I 4 HOH B 67 176 176 HOH HOH . I 4 HOH B 68 177 177 HOH HOH . I 4 HOH B 69 178 178 HOH HOH . I 4 HOH B 70 179 179 HOH HOH . I 4 HOH B 71 180 180 HOH HOH . I 4 HOH B 72 181 181 HOH HOH . I 4 HOH B 73 182 182 HOH HOH . I 4 HOH B 74 183 183 HOH HOH . I 4 HOH B 75 184 184 HOH HOH . I 4 HOH B 76 185 185 HOH HOH . I 4 HOH B 77 186 186 HOH HOH . I 4 HOH B 78 187 187 HOH HOH . I 4 HOH B 79 188 188 HOH HOH . I 4 HOH B 80 189 189 HOH HOH . I 4 HOH B 81 190 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . G 2 62.984 26.95 4.189 0.5 32.67 ? S SO4 109 B 1 HETATM 2 O O1 SO4 . . . G 2 63.851 27.604 3.198 0.5 34.55 ? O1 SO4 109 B 1 HETATM 3 O O2 SO4 . . . G 2 61.762 27.767 4.298 0.5 29.46 ? O2 SO4 109 B 1 HETATM 4 O O3 SO4 . . . G 2 62.782 25.549 3.758 0.5 26.67 ? O3 SO4 109 B 1 HETATM 5 O O4 SO4 . . . G 2 63.612 26.988 5.507 0.5 34.31 ? O4 SO4 109 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #