data_3M9M
#
_model_server_result.job_id            x-arG8Fuxqq_Meo8Na-UrQ 
_model_server_result.datetime_utc      '2024-11-16 04:28:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3m9m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":15}' 
#
_entry.id    3M9M 
#
_exptl.entry_id    3M9M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3M9M 
_cell.length_a            98.576 
_cell.length_b            101.193 
_cell.length_c            52.418 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3M9M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 I N N 
? 6 J N N 
? 6 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 7 B ASP 7 1_555 F CA CA . B CA 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc2 A O PHE 8 B PHE 8 1_555 F CA CA . B CA 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
metalc ? metalc3 A OD1 ASP 105 B ASP 105 1_555 E CA CA . B CA 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? 
metalc ? metalc4 A OD2 ASP 105 B ASP 105 1_555 F CA CA . B CA 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc5 A OE2 GLU 106 B GLU 106 1_555 E CA CA . B CA 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? 
metalc ? metalc6 A O ALA 181 B ALA 181 1_555 G CA CA . B CA 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? 
metalc ? metalc7 A O ILE 186 B ILE 186 1_555 G CA CA . B CA 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? 
metalc ? metalc8 E CA CA . B CA 353 1_555 D O5' CTP . B CTP 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? 
metalc ? metalc9 F CA CA . B CA 354 1_555 D O2B CTP . B CTP 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? 
metalc ? metalc10 F CA CA . B CA 354 1_555 D O1A CTP . B CTP 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.142 ? 
metalc ? metalc11 C N7 DG 4 T DG 3 1_555 L PT1 CPT . T CPT 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
metalc ? metalc12 C N7 DG 5 T DG 4 1_555 L PT1 CPT . T CPT 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? 
hydrog WATSON-CRICK hydrog1 B N1 DG 1 P DG 1 1_555 C N3 DC 18 T DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 B N2 DG 1 P DG 1 1_555 C O2 DC 18 T DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 B O6 DG 1 P DG 1 1_555 C N4 DC 18 T DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 B N1 DG 2 P DG 2 1_555 C N3 DC 17 T DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 B N2 DG 2 P DG 2 1_555 C O2 DC 17 T DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 B O6 DG 2 P DG 2 1_555 C N4 DC 17 T DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 B N1 DG 3 P DG 3 1_555 C N3 DC 16 T DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 B N2 DG 3 P DG 3 1_555 C O2 DC 16 T DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 B O6 DG 3 P DG 3 1_555 C N4 DC 16 T DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 B N1 DG 4 P DG 4 1_555 C N3 DC 15 T DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 B N2 DG 4 P DG 4 1_555 C O2 DC 15 T DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 B O6 DG 4 P DG 4 1_555 C N4 DC 15 T DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 B N1 DG 5 P DG 5 1_555 C N3 DC 14 T DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 B N2 DG 5 P DG 5 1_555 C O2 DC 14 T DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 B O6 DG 5 P DG 5 1_555 C N4 DC 14 T DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 B N1 DA 6 P DA 6 1_555 C N3 DT 13 T DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 B N6 DA 6 P DA 6 1_555 C O4 DT 13 T DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 B N1 DA 7 P DA 7 1_555 C N3 DT 12 T DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 B N6 DA 7 P DA 7 1_555 C O4 DT 12 T DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 B N1 DG 8 P DG 8 1_555 C N3 DC 11 T DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 B N2 DG 8 P DG 8 1_555 C O2 DC 11 T DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 B O6 DG 8 P DG 8 1_555 C N4 DC 11 T DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 B N1 DG 9 P DG 9 1_555 C N3 DC 10 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 B N2 DG 9 P DG 9 1_555 C O2 DC 10 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 B O6 DG 9 P DG 9 1_555 C N4 DC 10 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 B N1 DA 10 P DA 10 1_555 C N3 DT 9 T DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog27 B N6 DA 10 P DA 10 1_555 C O4 DT 9 T DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog28 B N1 DA 11 P DA 11 1_555 C N3 DT 8 T DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog29 B N6 DA 11 P DA 11 1_555 C O4 DT 8 T DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog30 B N1 DA 12 P DA 12 1_555 C N3 DT 7 T DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog31 B N6 DA 12 P DA 12 1_555 C O4 DT 7 T DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 334 n n 
C1 C2 GOL sing 335 n n 
C1 H11 GOL sing 336 n n 
C1 H12 GOL sing 337 n n 
O1 HO1 GOL sing 338 n n 
C2 O2 GOL sing 339 n n 
C2 C3 GOL sing 340 n n 
C2 H2 GOL sing 341 n n 
O2 HO2 GOL sing 342 n n 
C3 O3 GOL sing 343 n n 
C3 H31 GOL sing 344 n n 
C3 H32 GOL sing 345 n n 
O3 HO3 GOL sing 346 n n 
#
_atom_sites.entry_id                     3M9M 
_atom_sites.fract_transf_matrix[1][1]    0.010144 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009882 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019077 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 CTP B 1 2001 2001 CTP CTP . 
E 5 CA B 1 353 353 CA CA . 
F 5 CA B 1 354 354 CA CA . 
G 5 CA B 1 355 355 CA CA . 
H 5 CA B 1 356 356 CA CA . 
I 6 GOL B 1 357 357 GOL GOL . 
J 6 GOL P 1 14 14 GOL GOL . 
K 6 GOL P 1 15 15 GOL GOL . 
L 7 CPT T 1 1004 1004 CPT CPT . 
M 8 HOH B 1 358 358 HOH HOH . 
M 8 HOH B 2 359 359 HOH HOH . 
M 8 HOH B 3 360 360 HOH HOH . 
M 8 HOH B 4 361 361 HOH HOH . 
M 8 HOH B 5 362 362 HOH HOH . 
M 8 HOH B 6 363 363 HOH HOH . 
M 8 HOH B 7 364 364 HOH HOH . 
M 8 HOH B 8 365 365 HOH HOH . 
M 8 HOH B 9 366 366 HOH HOH . 
M 8 HOH B 10 367 367 HOH HOH . 
M 8 HOH B 11 368 368 HOH HOH . 
M 8 HOH B 12 369 369 HOH HOH . 
M 8 HOH B 13 370 370 HOH HOH . 
M 8 HOH B 14 371 371 HOH HOH . 
M 8 HOH B 15 372 372 HOH HOH . 
M 8 HOH B 16 373 373 HOH HOH . 
M 8 HOH B 17 374 374 HOH HOH . 
M 8 HOH B 18 375 375 HOH HOH . 
M 8 HOH B 19 376 376 HOH HOH . 
M 8 HOH B 20 377 377 HOH HOH . 
M 8 HOH B 21 378 378 HOH HOH . 
M 8 HOH B 22 379 379 HOH HOH . 
M 8 HOH B 23 380 380 HOH HOH . 
M 8 HOH B 24 381 381 HOH HOH . 
M 8 HOH B 25 382 382 HOH HOH . 
M 8 HOH B 26 383 383 HOH HOH . 
M 8 HOH B 27 384 384 HOH HOH . 
M 8 HOH B 28 385 385 HOH HOH . 
M 8 HOH B 29 386 386 HOH HOH . 
M 8 HOH B 30 387 387 HOH HOH . 
M 8 HOH B 31 388 388 HOH HOH . 
M 8 HOH B 32 389 389 HOH HOH . 
M 8 HOH B 33 390 390 HOH HOH . 
N 8 HOH P 1 19 19 HOH HOH . 
N 8 HOH P 2 28 28 HOH HOH . 
N 8 HOH P 3 35 35 HOH HOH . 
O 8 HOH T 1 18 18 HOH HOH . 
O 8 HOH T 2 22 22 HOH HOH . 
O 8 HOH T 3 29 29 HOH HOH . 
O 8 HOH T 4 31 31 HOH HOH . 
O 8 HOH T 5 39 39 HOH HOH . 
O 8 HOH T 6 40 40 HOH HOH . 
O 8 HOH T 7 48 48 HOH HOH . 
O 8 HOH T 8 57 57 HOH HOH . 
O 8 HOH T 9 58 58 HOH HOH . 
O 8 HOH T 10 84 84 HOH HOH . 
O 8 HOH T 11 93 93 HOH HOH . 
O 8 HOH T 12 94 94 HOH HOH . 
O 8 HOH T 13 391 391 HOH HOH . 
O 8 HOH T 14 392 392 HOH HOH . 
O 8 HOH T 15 393 393 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 6 13.62 -34.782 -30.059 1 57.78 ? C1 GOL 15 P 1 
HETATM 2 O O1 GOL . . . K 6 14.887 -33.957 -30.216 1 57.2 ? O1 GOL 15 P 1 
HETATM 3 C C2 GOL . . . K 6 13.386 -34.688 -28.612 1 57.85 ? C2 GOL 15 P 1 
HETATM 4 O O2 GOL . . . K 6 14.087 -33.706 -27.843 1 58.03 ? O2 GOL 15 P 1 
HETATM 5 C C3 GOL . . . K 6 11.93 -35.139 -28.029 1 57.69 ? C3 GOL 15 P 1 
HETATM 6 O O3 GOL . . . K 6 11.853 -34.626 -26.652 1 59.16 ? O3 GOL 15 P 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           420 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#