data_3M9X
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_model_server_result.job_id            hi0H0glCFcSWHVMqND77nA 
_model_server_result.datetime_utc      '2024-11-13 15:47:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3m9x 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":400}' 
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_entry.id    3M9X 
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_exptl.entry_id    3M9X 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              150.13 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            beta-D-xylopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.51 
_cell.angle_gamma         90 
_cell.entry_id            3M9X 
_cell.length_a            34.718 
_cell.length_b            71.706 
_cell.length_c            66.356 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3M9X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C5 H10 O5' 
_chem_comp.formula_weight    150.13 
_chem_comp.id                XYP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              beta-D-xylopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     beta-D-xylose;D-xylose;xylose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 XYP sing 363 n n 
O1 HO1 XYP sing 364 n n 
C1 C2 XYP sing 365 n n 
C1 O5 XYP sing 366 n n 
C1 H1 XYP sing 367 n n 
C2 C3 XYP sing 368 n n 
C2 O2 XYP sing 369 n n 
C2 H2 XYP sing 370 n n 
C3 C4 XYP sing 371 n n 
C3 O3 XYP sing 372 n n 
C3 H3 XYP sing 373 n n 
C4 C5 XYP sing 374 n n 
C4 O4 XYP sing 375 n n 
C4 H4 XYP sing 376 n n 
C5 O5 XYP sing 377 n n 
C5 H51 XYP sing 378 n n 
C5 H52 XYP sing 379 n n 
O2 HO2 XYP sing 380 n n 
O3 HO3 XYP sing 381 n n 
O4 HO4 XYP sing 382 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
XYP DXylpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
XYP b-D-xylopyranose 'COMMON NAME' GMML 1 
XYP b-D-Xylp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
XYP Xyl 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3M9X 
_atom_sites.fract_transf_matrix[1][1]    0.028804 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005344 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013946 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015327 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 XYP A 1 400 400 XYP XYP . 
C 3 HOH A 1 314 1 HOH HOH . 
C 3 HOH A 2 315 2 HOH HOH . 
C 3 HOH A 3 316 3 HOH HOH . 
C 3 HOH A 4 317 4 HOH HOH . 
C 3 HOH A 5 318 5 HOH HOH . 
C 3 HOH A 6 319 6 HOH HOH . 
C 3 HOH A 7 320 7 HOH HOH . 
C 3 HOH A 8 321 8 HOH HOH . 
C 3 HOH A 9 322 9 HOH HOH . 
C 3 HOH A 10 323 10 HOH HOH . 
C 3 HOH A 11 324 11 HOH HOH . 
C 3 HOH A 12 325 12 HOH HOH . 
C 3 HOH A 13 326 13 HOH HOH . 
C 3 HOH A 14 327 14 HOH HOH . 
C 3 HOH A 15 328 15 HOH HOH . 
C 3 HOH A 16 329 16 HOH HOH . 
C 3 HOH A 17 330 17 HOH HOH . 
C 3 HOH A 18 331 18 HOH HOH . 
C 3 HOH A 19 332 19 HOH HOH . 
C 3 HOH A 20 333 20 HOH HOH . 
C 3 HOH A 21 334 21 HOH HOH . 
C 3 HOH A 22 335 22 HOH HOH . 
C 3 HOH A 23 336 23 HOH HOH . 
C 3 HOH A 24 337 24 HOH HOH . 
C 3 HOH A 25 338 25 HOH HOH . 
C 3 HOH A 26 339 26 HOH HOH . 
C 3 HOH A 27 340 27 HOH HOH . 
C 3 HOH A 28 341 28 HOH HOH . 
C 3 HOH A 29 342 29 HOH HOH . 
C 3 HOH A 30 343 30 HOH HOH . 
C 3 HOH A 31 344 31 HOH HOH . 
C 3 HOH A 32 345 32 HOH HOH . 
C 3 HOH A 33 346 33 HOH HOH . 
C 3 HOH A 34 347 34 HOH HOH . 
C 3 HOH A 35 348 35 HOH HOH . 
C 3 HOH A 36 349 36 HOH HOH . 
C 3 HOH A 37 350 37 HOH HOH . 
C 3 HOH A 38 351 38 HOH HOH . 
C 3 HOH A 39 352 39 HOH HOH . 
C 3 HOH A 40 353 40 HOH HOH . 
C 3 HOH A 41 354 41 HOH HOH . 
C 3 HOH A 42 355 42 HOH HOH . 
C 3 HOH A 43 356 43 HOH HOH . 
C 3 HOH A 44 357 44 HOH HOH . 
C 3 HOH A 45 358 45 HOH HOH . 
C 3 HOH A 46 359 46 HOH HOH . 
C 3 HOH A 47 360 47 HOH HOH . 
C 3 HOH A 48 361 48 HOH HOH . 
C 3 HOH A 49 362 49 HOH HOH . 
C 3 HOH A 50 363 50 HOH HOH . 
C 3 HOH A 51 364 51 HOH HOH . 
C 3 HOH A 52 365 52 HOH HOH . 
C 3 HOH A 53 366 53 HOH HOH . 
C 3 HOH A 54 367 54 HOH HOH . 
C 3 HOH A 55 368 55 HOH HOH . 
C 3 HOH A 56 369 56 HOH HOH . 
C 3 HOH A 57 370 57 HOH HOH . 
C 3 HOH A 58 371 58 HOH HOH . 
C 3 HOH A 59 372 59 HOH HOH . 
C 3 HOH A 60 373 60 HOH HOH . 
C 3 HOH A 61 374 61 HOH HOH . 
C 3 HOH A 62 375 62 HOH HOH . 
C 3 HOH A 63 376 63 HOH HOH . 
C 3 HOH A 64 377 64 HOH HOH . 
C 3 HOH A 65 378 65 HOH HOH . 
C 3 HOH A 66 379 66 HOH HOH . 
C 3 HOH A 67 380 67 HOH HOH . 
C 3 HOH A 68 381 68 HOH HOH . 
C 3 HOH A 69 382 69 HOH HOH . 
C 3 HOH A 70 383 70 HOH HOH . 
C 3 HOH A 71 384 71 HOH HOH . 
C 3 HOH A 72 385 72 HOH HOH . 
C 3 HOH A 73 386 73 HOH HOH . 
C 3 HOH A 74 387 74 HOH HOH . 
C 3 HOH A 75 388 75 HOH HOH . 
C 3 HOH A 76 389 76 HOH HOH . 
C 3 HOH A 77 390 77 HOH HOH . 
C 3 HOH A 78 391 78 HOH HOH . 
C 3 HOH A 79 392 79 HOH HOH . 
C 3 HOH A 80 393 80 HOH HOH . 
C 3 HOH A 81 394 81 HOH HOH . 
C 3 HOH A 82 395 82 HOH HOH . 
C 3 HOH A 83 396 83 HOH HOH . 
C 3 HOH A 84 397 84 HOH HOH . 
C 3 HOH A 85 398 85 HOH HOH . 
C 3 HOH A 86 399 86 HOH HOH . 
C 3 HOH A 87 401 87 HOH HOH . 
C 3 HOH A 88 402 88 HOH HOH . 
C 3 HOH A 89 403 89 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 XYP . . . B 2 4.798 12.865 22.42 1 22.37 ? O1 XYP 400 A 1 
HETATM 2 C C1 XYP . . . B 2 5.177 12.597 21.09 1 24.18 ? C1 XYP 400 A 1 
HETATM 3 C C2 XYP . . . B 2 5.037 13.915 20.387 1 24.03 ? C2 XYP 400 A 1 
HETATM 4 C C3 XYP . . . B 2 5.529 13.776 18.935 1 22.03 ? C3 XYP 400 A 1 
HETATM 5 C C4 XYP . . . B 2 6.976 13.243 18.924 1 21.43 ? C4 XYP 400 A 1 
HETATM 6 C C5 XYP . . . B 2 7.152 12.022 19.804 1 23.07 ? C5 XYP 400 A 1 
HETATM 7 O O2 XYP . . . B 2 3.666 14.346 20.47 1 26.07 ? O2 XYP 400 A 1 
HETATM 8 O O3 XYP . . . B 2 5.392 15.073 18.3 1 17.8 ? O3 XYP 400 A 1 
HETATM 9 O O4 XYP . . . B 2 7.29 12.671 17.649 1 24.05 ? O4 XYP 400 A 1 
HETATM 10 O O5 XYP . . . B 2 6.549 12.198 21.077 1 25.19 ? O5 XYP 400 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           228 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#