data_3MA2 # _model_server_result.job_id 9FFt6ZDxGKNPPepHC5DE0A _model_server_result.datetime_utc '2024-10-25 20:31:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ma2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":293}' # _entry.id 3MA2 # _exptl.entry_id 3MA2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.86 _cell.angle_gamma 90 _cell.entry_id 3MA2 _cell.length_a 59.69 _cell.length_b 63.649 _cell.length_c 87.158 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MA2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,M,P 1 1 B,C,I,J,K,L,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N ? 3 I N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 1 B CYS 301 1_555 C SG CYS 70 B CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf2 C SG CYS 3 B CYS 303 1_555 C SG CYS 99 B CYS 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? disulf ? disulf3 C SG CYS 13 B CYS 313 1_555 C SG CYS 124 B CYS 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf4 D SG CYS 1 C CYS 301 1_555 D SG CYS 70 C CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf5 D SG CYS 3 C CYS 303 1_555 D SG CYS 99 C CYS 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 D SG CYS 13 C CYS 313 1_555 D SG CYS 124 C CYS 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc1 M O HOH . D HOH 23 1_555 E CA CA . D CA 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc2 M O HOH . D HOH 26 1_555 E CA CA . D CA 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc3 A O ASP 65 D ASP 176 1_555 E CA CA . D CA 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc4 A NE2 HIS 75 D HIS 186 1_555 G ZN ZN . D ZN 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc5 A OD2 ASP 77 D ASP 188 1_555 G ZN ZN . D ZN 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc6 A OD1 ASP 82 D ASP 193 1_555 H CA CA . D CA 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc7 A O GLY 83 D GLY 194 1_555 H CA CA . D CA 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc8 A O GLY 85 D GLY 196 1_555 H CA CA . D CA 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc9 A O PHE 87 D PHE 198 1_555 H CA CA . D CA 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc10 A NE2 HIS 90 D HIS 201 1_555 G ZN ZN . D ZN 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc11 A O ASN 97 D ASN 208 1_555 E CA CA . D CA 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc12 A O GLY 99 D GLY 210 1_555 E CA CA . D CA 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc13 A OD1 ASP 101 D ASP 212 1_555 E CA CA . D CA 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc14 A ND1 HIS 103 D HIS 214 1_555 G ZN ZN . D ZN 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc15 A OD2 ASP 105 D ASP 216 1_555 H CA CA . D CA 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc16 A OE2 GLU 108 D GLU 219 1_555 H CA CA . D CA 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc17 A NE2 HIS 128 D HIS 239 1_555 F ZN ZN . D ZN 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc18 A NE2 HIS 132 D HIS 243 1_555 F ZN ZN . D ZN 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc19 A NE2 HIS 138 D HIS 249 1_555 F ZN ZN . D ZN 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc20 F ZN ZN . D ZN 294 1_555 D O CYS 1 C CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc21 F ZN ZN . D ZN 294 1_555 D N CYS 1 C CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc22 N O HOH . A HOH 64 1_555 I CA CA . A CA 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc23 B O ASP 65 A ASP 176 1_555 I CA CA . A CA 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc24 B NE2 HIS 75 A HIS 186 1_555 K ZN ZN . A ZN 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc25 B OD2 ASP 77 A ASP 188 1_555 K ZN ZN . A ZN 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.9 ? metalc ? metalc26 B OD1 ASP 82 A ASP 193 1_555 L CA CA . A CA 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc27 B O GLY 83 A GLY 194 1_555 L CA CA . A CA 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc28 B O GLY 85 A GLY 196 1_555 L CA CA . A CA 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc29 B O PHE 87 A PHE 198 1_555 L CA CA . A CA 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc30 B NE2 HIS 90 A HIS 201 1_555 K ZN ZN . A ZN 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc31 B O ASN 97 A ASN 208 1_555 I CA CA . A CA 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc32 B O GLY 99 A GLY 210 1_555 I CA CA . A CA 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc33 B OD1 ASP 101 A ASP 212 1_555 I CA CA . A CA 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc34 B ND1 HIS 103 A HIS 214 1_555 K ZN ZN . A ZN 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc35 B OD2 ASP 105 A ASP 216 1_555 L CA CA . A CA 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc36 B OE2 GLU 108 A GLU 219 1_555 L CA CA . A CA 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc37 B NE2 HIS 128 A HIS 239 1_555 J ZN ZN . A ZN 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc38 B NE2 HIS 132 A HIS 243 1_555 J ZN ZN . A ZN 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc39 B NE2 HIS 138 A HIS 249 1_555 J ZN ZN . A ZN 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc40 I CA CA . A CA 293 1_555 N O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc41 J ZN ZN . A ZN 294 1_555 C N CYS 1 B CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc42 J ZN ZN . A ZN 294 1_555 C O CYS 1 B CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3MA2 _atom_sites.fract_transf_matrix[1][1] 0.016753 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00476 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015711 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011928 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CA D 1 293 288 CA CA . F 4 ZN D 1 294 289 ZN ZN . G 4 ZN D 1 295 290 ZN ZN . H 3 CA D 1 296 291 CA CA . I 3 CA A 1 293 288 CA CA . J 4 ZN A 1 294 289 ZN ZN . K 4 ZN A 1 295 290 ZN ZN . L 3 CA A 1 296 291 CA CA . M 5 HOH D 1 19 19 HOH HOH . M 5 HOH D 2 21 21 HOH HOH . M 5 HOH D 3 22 22 HOH HOH . M 5 HOH D 4 23 23 HOH HOH . M 5 HOH D 5 25 25 HOH HOH . M 5 HOH D 6 26 26 HOH HOH . M 5 HOH D 7 27 27 HOH HOH . M 5 HOH D 8 30 30 HOH HOH . M 5 HOH D 9 32 32 HOH HOH . M 5 HOH D 10 34 34 HOH HOH . M 5 HOH D 11 36 36 HOH HOH . M 5 HOH D 12 37 37 HOH HOH . M 5 HOH D 13 39 39 HOH HOH . M 5 HOH D 14 40 40 HOH HOH . M 5 HOH D 15 41 41 HOH HOH . M 5 HOH D 16 44 44 HOH HOH . M 5 HOH D 17 46 46 HOH HOH . M 5 HOH D 18 47 47 HOH HOH . M 5 HOH D 19 48 48 HOH HOH . M 5 HOH D 20 50 50 HOH HOH . M 5 HOH D 21 55 55 HOH HOH . M 5 HOH D 22 56 56 HOH HOH . M 5 HOH D 23 57 57 HOH HOH . M 5 HOH D 24 58 58 HOH HOH . M 5 HOH D 25 65 65 HOH HOH . M 5 HOH D 26 66 66 HOH HOH . M 5 HOH D 27 68 68 HOH HOH . M 5 HOH D 28 69 69 HOH HOH . M 5 HOH D 29 76 76 HOH HOH . M 5 HOH D 30 77 77 HOH HOH . M 5 HOH D 31 78 78 HOH HOH . M 5 HOH D 32 79 79 HOH HOH . M 5 HOH D 33 80 80 HOH HOH . M 5 HOH D 34 83 83 HOH HOH . M 5 HOH D 35 84 84 HOH HOH . M 5 HOH D 36 86 86 HOH HOH . M 5 HOH D 37 297 113 HOH HOH . M 5 HOH D 38 298 114 HOH HOH . M 5 HOH D 39 299 115 HOH HOH . M 5 HOH D 40 300 118 HOH HOH . M 5 HOH D 41 301 120 HOH HOH . M 5 HOH D 42 302 121 HOH HOH . M 5 HOH D 43 303 122 HOH HOH . M 5 HOH D 44 304 124 HOH HOH . M 5 HOH D 45 305 125 HOH HOH . M 5 HOH D 46 306 126 HOH HOH . M 5 HOH D 47 307 127 HOH HOH . M 5 HOH D 48 308 128 HOH HOH . M 5 HOH D 49 309 132 HOH HOH . M 5 HOH D 50 310 133 HOH HOH . M 5 HOH D 51 311 137 HOH HOH . M 5 HOH D 52 312 142 HOH HOH . M 5 HOH D 53 313 143 HOH HOH . M 5 HOH D 54 314 146 HOH HOH . M 5 HOH D 55 315 147 HOH HOH . M 5 HOH D 56 316 149 HOH HOH . M 5 HOH D 57 317 152 HOH HOH . M 5 HOH D 58 318 154 HOH HOH . M 5 HOH D 59 319 164 HOH HOH . M 5 HOH D 60 320 168 HOH HOH . M 5 HOH D 61 321 169 HOH HOH . M 5 HOH D 62 322 170 HOH HOH . N 5 HOH A 1 20 20 HOH HOH . N 5 HOH A 2 29 29 HOH HOH . N 5 HOH A 3 33 33 HOH HOH . N 5 HOH A 4 35 35 HOH HOH . N 5 HOH A 5 38 38 HOH HOH . N 5 HOH A 6 43 43 HOH HOH . N 5 HOH A 7 45 45 HOH HOH . N 5 HOH A 8 52 52 HOH HOH . N 5 HOH A 9 53 53 HOH HOH . N 5 HOH A 10 62 62 HOH HOH . N 5 HOH A 11 64 64 HOH HOH . N 5 HOH A 12 71 71 HOH HOH . N 5 HOH A 13 72 72 HOH HOH . N 5 HOH A 14 73 73 HOH HOH . N 5 HOH A 15 74 74 HOH HOH . N 5 HOH A 16 75 75 HOH HOH . N 5 HOH A 17 82 82 HOH HOH . N 5 HOH A 18 297 112 HOH HOH . N 5 HOH A 19 298 116 HOH HOH . N 5 HOH A 20 299 119 HOH HOH . N 5 HOH A 21 300 123 HOH HOH . N 5 HOH A 22 301 129 HOH HOH . N 5 HOH A 23 302 130 HOH HOH . N 5 HOH A 24 303 131 HOH HOH . N 5 HOH A 25 304 135 HOH HOH . N 5 HOH A 26 305 136 HOH HOH . N 5 HOH A 27 306 139 HOH HOH . N 5 HOH A 28 307 140 HOH HOH . N 5 HOH A 29 308 141 HOH HOH . N 5 HOH A 30 309 151 HOH HOH . N 5 HOH A 31 310 153 HOH HOH . N 5 HOH A 32 311 157 HOH HOH . N 5 HOH A 33 312 161 HOH HOH . N 5 HOH A 34 313 166 HOH HOH . N 5 HOH A 35 314 172 HOH HOH . O 5 HOH B 1 24 24 HOH HOH . O 5 HOH B 2 42 42 HOH HOH . O 5 HOH B 3 49 49 HOH HOH . O 5 HOH B 4 54 54 HOH HOH . O 5 HOH B 5 59 59 HOH HOH . O 5 HOH B 6 60 60 HOH HOH . O 5 HOH B 7 61 61 HOH HOH . O 5 HOH B 8 63 63 HOH HOH . O 5 HOH B 9 67 67 HOH HOH . O 5 HOH B 10 70 70 HOH HOH . O 5 HOH B 11 81 81 HOH HOH . O 5 HOH B 12 85 85 HOH HOH . O 5 HOH B 13 134 134 HOH HOH . O 5 HOH B 14 138 138 HOH HOH . O 5 HOH B 15 144 144 HOH HOH . O 5 HOH B 16 145 145 HOH HOH . O 5 HOH B 17 148 148 HOH HOH . O 5 HOH B 18 150 150 HOH HOH . O 5 HOH B 19 160 160 HOH HOH . O 5 HOH B 20 165 165 HOH HOH . O 5 HOH B 21 167 167 HOH HOH . O 5 HOH B 22 173 173 HOH HOH . O 5 HOH B 23 176 176 HOH HOH . P 5 HOH C 1 1 1 HOH HOH . P 5 HOH C 2 3 3 HOH HOH . P 5 HOH C 3 5 5 HOH HOH . P 5 HOH C 4 7 7 HOH HOH . P 5 HOH C 5 9 9 HOH HOH . P 5 HOH C 6 11 11 HOH HOH . P 5 HOH C 7 13 13 HOH HOH . P 5 HOH C 8 15 15 HOH HOH . P 5 HOH C 9 17 17 HOH HOH . P 5 HOH C 10 28 28 HOH HOH . P 5 HOH C 11 88 88 HOH HOH . P 5 HOH C 12 90 90 HOH HOH . P 5 HOH C 13 92 92 HOH HOH . P 5 HOH C 14 94 94 HOH HOH . P 5 HOH C 15 97 97 HOH HOH . P 5 HOH C 16 100 100 HOH HOH . P 5 HOH C 17 102 102 HOH HOH . P 5 HOH C 18 104 104 HOH HOH . P 5 HOH C 19 107 107 HOH HOH . P 5 HOH C 20 109 109 HOH HOH . P 5 HOH C 21 155 155 HOH HOH . P 5 HOH C 22 156 156 HOH HOH . P 5 HOH C 23 158 158 HOH HOH . P 5 HOH C 24 159 159 HOH HOH . P 5 HOH C 25 163 163 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 3 _atom_site.Cartn_x -6.116 _atom_site.Cartn_y -3.967 _atom_site.Cartn_z 2.643 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.83 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 293 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #