data_3MA3 # _model_server_result.job_id 2afFaSvgg-7cOb1BwYBMVw _model_server_result.datetime_utc '2024-11-21 21:41:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ma3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":313}' # _entry.id 3MA3 # _exptl.entry_id 3MA3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 296.231 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "naphtho[2,1-b:7,6-b']difuran-2,8-dicarboxylic acid" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3MA3 _cell.length_a 97.707 _cell.length_b 97.707 _cell.length_c 80.581 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MA3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 261 A SER 260 1_555 A N SEP 262 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale2 A C SEP 262 A SEP 261 1_555 A N GLU 263 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C16 H8 O6' _chem_comp.formula_weight 296.231 _chem_comp.id 01I _chem_comp.mon_nstd_flag . _chem_comp.name "naphtho[2,1-b:7,6-b']difuran-2,8-dicarboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAB CAA 01I doub 1 n y CAA CAF 01I sing 2 n y CAA HAA 01I sing 3 n n CAK CAB 01I sing 4 n y CAC CAB 01I sing 5 n y OAM CAC 01I sing 6 n y CAC CAD 01I doub 7 n y CAD CAE 01I sing 8 n y CAD HAD 01I sing 9 n n CAE CAG 01I doub 10 n y CAE CAF 01I sing 11 n y CAF CAJ 01I doub 12 n y CAN CAG 01I sing 13 n y CAG CAH 01I sing 14 n y CAH OAP 01I sing 15 n y CAH CAI 01I doub 16 n y CAJ CAI 01I sing 17 n y CAI HAI 01I sing 18 n n CAJ HAJ 01I sing 19 n n CAL CAK 01I doub 20 n y CAK HAK 01I sing 21 n n CAR CAL 01I sing 22 n n CAL OAM 01I sing 23 n y CAN CAO 01I doub 24 n y CAN HAN 01I sing 25 n n CAO CAQ 01I sing 26 n n CAO OAP 01I sing 27 n y OAU CAQ 01I doub 28 n n CAQ OAT 01I sing 29 n n OAS CAR 01I doub 30 n n OAV CAR 01I sing 31 n n OAT HOAT 01I sing 32 n n OAV HOAV 01I sing 33 n n # _atom_sites.entry_id 3MA3 _atom_sites.fract_transf_matrix[1][1] 0.010235 _atom_sites.fract_transf_matrix[1][2] 0.005909 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011818 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 01I A 1 313 1 01I 01I . D 4 HOH A 1 314 1 HOH HOH . D 4 HOH A 2 315 2 HOH HOH . D 4 HOH A 3 316 3 HOH HOH . D 4 HOH A 4 317 4 HOH HOH . D 4 HOH A 5 318 5 HOH HOH . D 4 HOH A 6 319 6 HOH HOH . D 4 HOH A 7 320 7 HOH HOH . D 4 HOH A 8 321 8 HOH HOH . D 4 HOH A 9 322 9 HOH HOH . D 4 HOH A 10 323 10 HOH HOH . D 4 HOH A 11 324 11 HOH HOH . D 4 HOH A 12 325 12 HOH HOH . D 4 HOH A 13 326 13 HOH HOH . D 4 HOH A 14 327 14 HOH HOH . D 4 HOH A 15 328 15 HOH HOH . D 4 HOH A 16 329 16 HOH HOH . D 4 HOH A 17 330 17 HOH HOH . D 4 HOH A 18 331 18 HOH HOH . D 4 HOH A 19 332 19 HOH HOH . D 4 HOH A 20 333 20 HOH HOH . D 4 HOH A 21 334 21 HOH HOH . D 4 HOH A 22 335 22 HOH HOH . D 4 HOH A 23 336 23 HOH HOH . D 4 HOH A 24 337 24 HOH HOH . D 4 HOH A 25 338 25 HOH HOH . D 4 HOH A 26 339 26 HOH HOH . D 4 HOH A 27 340 27 HOH HOH . D 4 HOH A 28 341 28 HOH HOH . D 4 HOH A 29 342 30 HOH HOH . D 4 HOH A 30 343 31 HOH HOH . D 4 HOH A 31 344 32 HOH HOH . D 4 HOH A 32 345 33 HOH HOH . D 4 HOH A 33 346 34 HOH HOH . D 4 HOH A 34 347 35 HOH HOH . D 4 HOH A 35 348 36 HOH HOH . D 4 HOH A 36 349 37 HOH HOH . D 4 HOH A 37 350 38 HOH HOH . D 4 HOH A 38 351 40 HOH HOH . D 4 HOH A 39 352 41 HOH HOH . D 4 HOH A 40 353 42 HOH HOH . D 4 HOH A 41 354 43 HOH HOH . D 4 HOH A 42 355 44 HOH HOH . D 4 HOH A 43 356 45 HOH HOH . D 4 HOH A 44 357 46 HOH HOH . D 4 HOH A 45 358 47 HOH HOH . D 4 HOH A 46 359 48 HOH HOH . D 4 HOH A 47 360 49 HOH HOH . D 4 HOH A 48 361 50 HOH HOH . D 4 HOH A 49 362 51 HOH HOH . D 4 HOH A 50 363 52 HOH HOH . D 4 HOH A 51 364 53 HOH HOH . D 4 HOH A 52 365 54 HOH HOH . D 4 HOH A 53 366 55 HOH HOH . D 4 HOH A 54 367 56 HOH HOH . D 4 HOH A 55 368 57 HOH HOH . D 4 HOH A 56 369 58 HOH HOH . D 4 HOH A 57 370 59 HOH HOH . D 4 HOH A 58 371 60 HOH HOH . D 4 HOH A 59 372 61 HOH HOH . D 4 HOH A 60 373 63 HOH HOH . D 4 HOH A 61 374 64 HOH HOH . D 4 HOH A 62 375 65 HOH HOH . D 4 HOH A 63 376 66 HOH HOH . D 4 HOH A 64 377 67 HOH HOH . D 4 HOH A 65 378 68 HOH HOH . D 4 HOH A 66 379 69 HOH HOH . D 4 HOH A 67 380 70 HOH HOH . D 4 HOH A 68 381 71 HOH HOH . D 4 HOH A 69 382 72 HOH HOH . D 4 HOH A 70 383 73 HOH HOH . D 4 HOH A 71 384 74 HOH HOH . D 4 HOH A 72 385 75 HOH HOH . D 4 HOH A 73 386 76 HOH HOH . D 4 HOH A 74 387 77 HOH HOH . D 4 HOH A 75 388 78 HOH HOH . D 4 HOH A 76 389 79 HOH HOH . D 4 HOH A 77 390 80 HOH HOH . D 4 HOH A 78 391 81 HOH HOH . D 4 HOH A 79 392 82 HOH HOH . D 4 HOH A 80 393 83 HOH HOH . D 4 HOH A 81 394 84 HOH HOH . D 4 HOH A 82 395 85 HOH HOH . D 4 HOH A 83 396 86 HOH HOH . D 4 HOH A 84 397 87 HOH HOH . D 4 HOH A 85 398 88 HOH HOH . D 4 HOH A 86 399 89 HOH HOH . D 4 HOH A 87 400 90 HOH HOH . D 4 HOH A 88 401 91 HOH HOH . D 4 HOH A 89 402 92 HOH HOH . D 4 HOH A 90 403 93 HOH HOH . D 4 HOH A 91 404 94 HOH HOH . D 4 HOH A 92 405 95 HOH HOH . D 4 HOH A 93 406 96 HOH HOH . D 4 HOH A 94 407 97 HOH HOH . D 4 HOH A 95 408 98 HOH HOH . D 4 HOH A 96 409 99 HOH HOH . D 4 HOH A 97 410 100 HOH HOH . D 4 HOH A 98 411 101 HOH HOH . D 4 HOH A 99 412 102 HOH HOH . D 4 HOH A 100 413 103 HOH HOH . D 4 HOH A 101 414 104 HOH HOH . D 4 HOH A 102 415 105 HOH HOH . D 4 HOH A 103 416 106 HOH HOH . D 4 HOH A 104 417 107 HOH HOH . D 4 HOH A 105 418 108 HOH HOH . D 4 HOH A 106 419 109 HOH HOH . D 4 HOH A 107 420 110 HOH HOH . D 4 HOH A 108 421 111 HOH HOH . D 4 HOH A 109 422 112 HOH HOH . D 4 HOH A 110 423 113 HOH HOH . D 4 HOH A 111 424 114 HOH HOH . D 4 HOH A 112 425 115 HOH HOH . D 4 HOH A 113 426 116 HOH HOH . D 4 HOH A 114 427 117 HOH HOH . D 4 HOH A 115 428 118 HOH HOH . D 4 HOH A 116 429 119 HOH HOH . D 4 HOH A 117 430 120 HOH HOH . D 4 HOH A 118 431 121 HOH HOH . D 4 HOH A 119 432 122 HOH HOH . D 4 HOH A 120 433 123 HOH HOH . D 4 HOH A 121 434 125 HOH HOH . D 4 HOH A 122 435 126 HOH HOH . D 4 HOH A 123 436 127 HOH HOH . D 4 HOH A 124 437 128 HOH HOH . D 4 HOH A 125 438 129 HOH HOH . D 4 HOH A 126 439 130 HOH HOH . D 4 HOH A 127 440 131 HOH HOH . D 4 HOH A 128 441 132 HOH HOH . D 4 HOH A 129 442 133 HOH HOH . D 4 HOH A 130 443 134 HOH HOH . D 4 HOH A 131 444 135 HOH HOH . D 4 HOH A 132 445 136 HOH HOH . D 4 HOH A 133 446 137 HOH HOH . D 4 HOH A 134 447 138 HOH HOH . D 4 HOH A 135 448 139 HOH HOH . D 4 HOH A 136 449 140 HOH HOH . D 4 HOH A 137 450 141 HOH HOH . D 4 HOH A 138 451 142 HOH HOH . D 4 HOH A 139 452 143 HOH HOH . D 4 HOH A 140 453 144 HOH HOH . D 4 HOH A 141 454 145 HOH HOH . D 4 HOH A 142 455 146 HOH HOH . D 4 HOH A 143 456 147 HOH HOH . D 4 HOH A 144 457 62 HOH HOH . E 4 HOH B 1 29 29 HOH HOH . E 4 HOH B 2 39 39 HOH HOH . E 4 HOH B 3 124 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 01I . . . C 3 -21.831 39.49 0.793 1 35.74 ? CAA 01I 313 A 1 HETATM 2 C CAB 01I . . . C 3 -22.027 39.435 -0.582 1 43.78 ? CAB 01I 313 A 1 HETATM 3 C CAC 01I . . . C 3 -21.352 38.532 -1.344 1 56.35 ? CAC 01I 313 A 1 HETATM 4 C CAD 01I . . . C 3 -20.441 37.628 -0.833 1 51.59 ? CAD 01I 313 A 1 HETATM 5 C CAE 01I . . . C 3 -20.232 37.664 0.523 1 33.68 ? CAE 01I 313 A 1 HETATM 6 C CAF 01I . . . C 3 -20.915 38.589 1.329 1 32.29 ? CAF 01I 313 A 1 HETATM 7 C CAG 01I . . . C 3 -19.334 36.805 1.137 1 41.75 ? CAG 01I 313 A 1 HETATM 8 C CAH 01I . . . C 3 -19.109 36.861 2.48 1 28.69 ? CAH 01I 313 A 1 HETATM 9 C CAI 01I . . . C 3 -19.79 37.735 3.29 1 44.82 ? CAI 01I 313 A 1 HETATM 10 C CAJ 01I . . . C 3 -20.684 38.62 2.698 1 33.15 ? CAJ 01I 313 A 1 HETATM 11 C CAK 01I . . . C 3 -22.863 40.163 -1.496 1 52.45 ? CAK 01I 313 A 1 HETATM 12 C CAL 01I . . . C 3 -22.601 39.631 -2.76 1 36.48 ? CAL 01I 313 A 1 HETATM 13 O OAM 01I . . . C 3 -21.746 38.7 -2.693 1 68.14 ? OAM 01I 313 A 1 HETATM 14 C CAN 01I . . . C 3 -18.488 35.774 0.619 1 31.69 ? CAN 01I 313 A 1 HETATM 15 C CAO 01I . . . C 3 -17.821 35.264 1.743 1 33.39 ? CAO 01I 313 A 1 HETATM 16 O OAP 01I . . . C 3 -18.145 35.874 2.814 1 45.41 ? OAP 01I 313 A 1 HETATM 17 C CAQ 01I . . . C 3 -16.828 34.181 1.915 1 56.09 ? CAQ 01I 313 A 1 HETATM 18 C CAR 01I . . . C 3 -23.104 39.896 -4.145 1 78.04 ? CAR 01I 313 A 1 HETATM 19 O OAS 01I . . . C 3 -22.5 39.363 -5.113 1 67.94 ? OAS 01I 313 A 1 HETATM 20 O OAT 01I . . . C 3 -16.239 34.105 3.024 1 34.27 ? OAT 01I 313 A 1 HETATM 21 O OAU 01I . . . C 3 -16.672 33.386 0.952 1 43.42 ? OAU 01I 313 A 1 HETATM 22 O OAV 01I . . . C 3 -24.098 40.642 -4.299 1 62.66 ? OAV 01I 313 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 22 #