data_3MA7 # _model_server_result.job_id Usa04nlcyCY-UnYSA1v7pg _model_server_result.datetime_utc '2025-01-25 07:21:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ma7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":286}' # _entry.id 3MA7 # _exptl.entry_id 3MA7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details 'endogenous palmitic acid' _entity.formula_weight 256.424 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 102.15 _cell.angle_beta 92.22 _cell.angle_gamma 106.21 _cell.entry_id 3MA7 _cell.length_a 46.773 _cell.length_b 50.921 _cell.length_c 103.165 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MA7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,H,I,J,M,N 1 1 C,D,F,G,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 L N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG C 511 NAG 3 n E NAG 2 E 2 NAG C 512 NAG 3 n F NAG 1 F 1 NAG A 501 NAG 3 n F NAG 2 F 2 NAG A 502 NAG 3 n G NAG 1 G 1 NAG A 511 NAG 3 n G NAG 2 G 2 NAG A 512 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 C CYS 104 1_555 A SG CYS 168 C CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? disulf ? disulf2 A SG CYS 208 C CYS 208 1_555 A SG CYS 263 C CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf3 B SG CYS 25 D CYS 25 1_555 B SG CYS 80 D CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 C SG CYS 104 A CYS 104 1_555 C SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? disulf ? disulf5 C SG CYS 208 A CYS 208 1_555 C SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 D SG CYS 25 B CYS 25 1_555 D SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 42 C ASN 42 1_555 J C1 NAG . C NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 A ND2 ASN 165 C ASN 165 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 C ND2 ASN 42 A ASN 42 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale4 C ND2 ASN 165 A ASN 165 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale5 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 499 n n C1 O2 PLM doub 500 n n C1 C2 PLM sing 501 n n O1 H PLM sing 502 n n C2 C3 PLM sing 503 n n C2 H21 PLM sing 504 n n C2 H22 PLM sing 505 n n C3 C4 PLM sing 506 n n C3 H31 PLM sing 507 n n C3 H32 PLM sing 508 n n C4 C5 PLM sing 509 n n C4 H41 PLM sing 510 n n C4 H42 PLM sing 511 n n C5 C6 PLM sing 512 n n C5 H51 PLM sing 513 n n C5 H52 PLM sing 514 n n C6 C7 PLM sing 515 n n C6 H61 PLM sing 516 n n C6 H62 PLM sing 517 n n C7 C8 PLM sing 518 n n C7 H71 PLM sing 519 n n C7 H72 PLM sing 520 n n C8 C9 PLM sing 521 n n C8 H81 PLM sing 522 n n C8 H82 PLM sing 523 n n C9 CA PLM sing 524 n n C9 H91 PLM sing 525 n n C9 H92 PLM sing 526 n n CA CB PLM sing 527 n n CA HA1 PLM sing 528 n n CA HA2 PLM sing 529 n n CB CC PLM sing 530 n n CB HB1 PLM sing 531 n n CB HB2 PLM sing 532 n n CC CD PLM sing 533 n n CC HC1 PLM sing 534 n n CC HC2 PLM sing 535 n n CD CE PLM sing 536 n n CD HD1 PLM sing 537 n n CD HD2 PLM sing 538 n n CE CF PLM sing 539 n n CE HE1 PLM sing 540 n n CE HE2 PLM sing 541 n n CF CG PLM sing 542 n n CF HF1 PLM sing 543 n n CF HF2 PLM sing 544 n n CG HG1 PLM sing 545 n n CG HG2 PLM sing 546 n n CG HG3 PLM sing 547 n n # _atom_sites.entry_id 3MA7 _atom_sites.fract_transf_matrix[1][1] 0.02138 _atom_sites.fract_transf_matrix[1][2] 0.006215 _atom_sites.fract_transf_matrix[1][3] 0.002325 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020451 _atom_sites.fract_transf_matrix[2][3] 0.004847 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009969 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 4 CD4 C 1 2089 2089 CD4 CD4 . I 5 PLM C 1 286 286 PLM PLM . J 6 NAG C 1 501 501 NAG NAG . K 4 CD4 A 1 2089 2089 CD4 CD4 . L 5 PLM A 1 286 286 PLM PLM . M 7 HOH C 1 287 287 HOH HOH . M 7 HOH C 2 288 288 HOH HOH . M 7 HOH C 3 289 289 HOH HOH . M 7 HOH C 4 290 290 HOH HOH . M 7 HOH C 5 291 291 HOH HOH . M 7 HOH C 6 292 292 HOH HOH . M 7 HOH C 7 293 293 HOH HOH . M 7 HOH C 8 294 294 HOH HOH . M 7 HOH C 9 295 295 HOH HOH . M 7 HOH C 10 296 296 HOH HOH . M 7 HOH C 11 297 297 HOH HOH . M 7 HOH C 12 298 298 HOH HOH . M 7 HOH C 13 299 299 HOH HOH . M 7 HOH C 14 300 300 HOH HOH . M 7 HOH C 15 301 301 HOH HOH . M 7 HOH C 16 302 302 HOH HOH . M 7 HOH C 17 303 303 HOH HOH . M 7 HOH C 18 304 304 HOH HOH . M 7 HOH C 19 305 305 HOH HOH . M 7 HOH C 20 306 306 HOH HOH . M 7 HOH C 21 307 307 HOH HOH . M 7 HOH C 22 308 308 HOH HOH . M 7 HOH C 23 309 309 HOH HOH . M 7 HOH C 24 310 310 HOH HOH . M 7 HOH C 25 311 311 HOH HOH . M 7 HOH C 26 312 312 HOH HOH . M 7 HOH C 27 313 313 HOH HOH . M 7 HOH C 28 314 314 HOH HOH . M 7 HOH C 29 315 315 HOH HOH . M 7 HOH C 30 316 316 HOH HOH . M 7 HOH C 31 317 317 HOH HOH . M 7 HOH C 32 318 318 HOH HOH . M 7 HOH C 33 319 319 HOH HOH . M 7 HOH C 34 320 320 HOH HOH . M 7 HOH C 35 321 321 HOH HOH . M 7 HOH C 36 322 322 HOH HOH . M 7 HOH C 37 323 323 HOH HOH . M 7 HOH C 38 324 324 HOH HOH . M 7 HOH C 39 325 325 HOH HOH . M 7 HOH C 40 326 326 HOH HOH . M 7 HOH C 41 327 327 HOH HOH . M 7 HOH C 42 328 328 HOH HOH . M 7 HOH C 43 329 329 HOH HOH . M 7 HOH C 44 330 330 HOH HOH . M 7 HOH C 45 331 331 HOH HOH . M 7 HOH C 46 332 332 HOH HOH . M 7 HOH C 47 333 333 HOH HOH . M 7 HOH C 48 334 334 HOH HOH . M 7 HOH C 49 335 335 HOH HOH . M 7 HOH C 50 336 336 HOH HOH . M 7 HOH C 51 337 337 HOH HOH . M 7 HOH C 52 338 338 HOH HOH . M 7 HOH C 53 339 339 HOH HOH . M 7 HOH C 54 340 340 HOH HOH . M 7 HOH C 55 341 341 HOH HOH . M 7 HOH C 56 342 342 HOH HOH . M 7 HOH C 57 343 343 HOH HOH . M 7 HOH C 58 344 344 HOH HOH . M 7 HOH C 59 345 345 HOH HOH . M 7 HOH C 60 346 346 HOH HOH . M 7 HOH C 61 347 347 HOH HOH . M 7 HOH C 62 348 348 HOH HOH . N 7 HOH D 1 100 100 HOH HOH . N 7 HOH D 2 101 101 HOH HOH . N 7 HOH D 3 102 102 HOH HOH . N 7 HOH D 4 103 103 HOH HOH . N 7 HOH D 5 104 104 HOH HOH . N 7 HOH D 6 105 105 HOH HOH . N 7 HOH D 7 106 106 HOH HOH . N 7 HOH D 8 107 107 HOH HOH . N 7 HOH D 9 108 108 HOH HOH . N 7 HOH D 10 109 109 HOH HOH . N 7 HOH D 11 110 110 HOH HOH . N 7 HOH D 12 111 111 HOH HOH . N 7 HOH D 13 112 112 HOH HOH . N 7 HOH D 14 113 113 HOH HOH . N 7 HOH D 15 114 114 HOH HOH . N 7 HOH D 16 115 115 HOH HOH . N 7 HOH D 17 116 116 HOH HOH . N 7 HOH D 18 117 117 HOH HOH . N 7 HOH D 19 118 118 HOH HOH . N 7 HOH D 20 119 119 HOH HOH . N 7 HOH D 21 120 120 HOH HOH . N 7 HOH D 22 121 121 HOH HOH . N 7 HOH D 23 122 122 HOH HOH . N 7 HOH D 24 124 124 HOH HOH . N 7 HOH D 25 135 135 HOH HOH . N 7 HOH D 26 136 136 HOH HOH . N 7 HOH D 27 141 141 HOH HOH . N 7 HOH D 28 144 144 HOH HOH . N 7 HOH D 29 151 151 HOH HOH . N 7 HOH D 30 152 152 HOH HOH . N 7 HOH D 31 154 154 HOH HOH . N 7 HOH D 32 157 157 HOH HOH . N 7 HOH D 33 158 158 HOH HOH . N 7 HOH D 34 160 160 HOH HOH . N 7 HOH D 35 163 163 HOH HOH . N 7 HOH D 36 195 195 HOH HOH . O 7 HOH A 1 287 287 HOH HOH . O 7 HOH A 2 288 288 HOH HOH . O 7 HOH A 3 289 289 HOH HOH . O 7 HOH A 4 290 290 HOH HOH . O 7 HOH A 5 291 291 HOH HOH . O 7 HOH A 6 292 292 HOH HOH . O 7 HOH A 7 293 293 HOH HOH . O 7 HOH A 8 294 294 HOH HOH . O 7 HOH A 9 295 295 HOH HOH . O 7 HOH A 10 296 296 HOH HOH . O 7 HOH A 11 297 297 HOH HOH . O 7 HOH A 12 298 298 HOH HOH . O 7 HOH A 13 299 299 HOH HOH . O 7 HOH A 14 300 300 HOH HOH . O 7 HOH A 15 301 301 HOH HOH . O 7 HOH A 16 302 302 HOH HOH . O 7 HOH A 17 303 303 HOH HOH . O 7 HOH A 18 304 304 HOH HOH . O 7 HOH A 19 305 305 HOH HOH . O 7 HOH A 20 306 306 HOH HOH . O 7 HOH A 21 307 307 HOH HOH . O 7 HOH A 22 308 308 HOH HOH . O 7 HOH A 23 309 309 HOH HOH . O 7 HOH A 24 310 310 HOH HOH . O 7 HOH A 25 311 311 HOH HOH . O 7 HOH A 26 312 312 HOH HOH . O 7 HOH A 27 313 313 HOH HOH . O 7 HOH A 28 314 314 HOH HOH . O 7 HOH A 29 315 315 HOH HOH . O 7 HOH A 30 316 316 HOH HOH . O 7 HOH A 31 317 317 HOH HOH . O 7 HOH A 32 318 318 HOH HOH . O 7 HOH A 33 319 319 HOH HOH . O 7 HOH A 34 320 320 HOH HOH . O 7 HOH A 35 321 321 HOH HOH . O 7 HOH A 36 322 322 HOH HOH . O 7 HOH A 37 323 323 HOH HOH . O 7 HOH A 38 324 324 HOH HOH . O 7 HOH A 39 325 325 HOH HOH . O 7 HOH A 40 326 326 HOH HOH . O 7 HOH A 41 327 327 HOH HOH . O 7 HOH A 42 328 328 HOH HOH . O 7 HOH A 43 329 329 HOH HOH . P 7 HOH B 1 100 100 HOH HOH . P 7 HOH B 2 101 101 HOH HOH . P 7 HOH B 3 102 102 HOH HOH . P 7 HOH B 4 103 103 HOH HOH . P 7 HOH B 5 104 104 HOH HOH . P 7 HOH B 6 105 105 HOH HOH . P 7 HOH B 7 106 106 HOH HOH . P 7 HOH B 8 107 107 HOH HOH . P 7 HOH B 9 108 108 HOH HOH . P 7 HOH B 10 109 109 HOH HOH . P 7 HOH B 11 110 110 HOH HOH . P 7 HOH B 12 112 112 HOH HOH . P 7 HOH B 13 122 122 HOH HOH . P 7 HOH B 14 147 147 HOH HOH . P 7 HOH B 15 149 149 HOH HOH . P 7 HOH B 16 194 194 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . I 5 13.994 8.206 5.108 1 55.95 ? C1 PLM 286 C 1 HETATM 2 O O1 PLM . . . I 5 14.747 7.209 5.213 1 58.03 ? O1 PLM 286 C 1 HETATM 3 O O2 PLM . . . I 5 13.489 8.832 6.07 1 56.87 ? O2 PLM 286 C 1 HETATM 4 C C2 PLM . . . I 5 13.656 8.675 3.687 1 52.42 ? C2 PLM 286 C 1 HETATM 5 C C3 PLM . . . I 5 14.891 8.608 2.792 1 49.43 ? C3 PLM 286 C 1 HETATM 6 C C4 PLM . . . I 5 14.57 8.127 1.387 1 47.44 ? C4 PLM 286 C 1 HETATM 7 C C5 PLM . . . I 5 15.359 8.919 0.338 1 45.29 ? C5 PLM 286 C 1 HETATM 8 C C6 PLM . . . I 5 14.684 8.798 -1.036 1 44.14 ? C6 PLM 286 C 1 HETATM 9 C C7 PLM . . . I 5 15.191 9.8 -2.063 1 44.03 ? C7 PLM 286 C 1 HETATM 10 C C8 PLM . . . I 5 14.464 11.145 -1.962 1 43.69 ? C8 PLM 286 C 1 HETATM 11 C C9 PLM . . . I 5 15.281 12.185 -2.736 1 44.87 ? C9 PLM 286 C 1 HETATM 12 C CA PLM . . . I 5 14.944 13.636 -2.381 1 44.77 ? CA PLM 286 C 1 HETATM 13 C CB PLM . . . I 5 14.353 13.676 -0.991 1 44.69 ? CB PLM 286 C 1 HETATM 14 C CC PLM . . . I 5 13.297 14.753 -0.859 1 43.45 ? CC PLM 286 C 1 HETATM 15 C CD PLM . . . I 5 12.572 14.466 0.455 1 43.06 ? CD PLM 286 C 1 HETATM 16 C CE PLM . . . I 5 11.568 15.555 0.844 1 44.01 ? CE PLM 286 C 1 HETATM 17 C CF PLM . . . I 5 11.464 15.688 2.368 1 44.59 ? CF PLM 286 C 1 HETATM 18 C CG PLM . . . I 5 12.723 15.213 3.11 1 45.62 ? CG PLM 286 C 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #