data_3MAA # _model_server_result.job_id ct0IckmkPahc59walPevdw _model_server_result.datetime_utc '2024-10-26 22:28:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3maa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1}' # _entry.id 3MAA # _exptl.entry_id 3MAA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.247 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MAA _cell.length_a 118.744 _cell.length_b 133.722 _cell.length_c 70.992 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MAA _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 85 A ASP 440 1_555 E CA CA . A CA 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.135 ? metalc ? metalc2 E CA CA . A CA 581 1_555 F O2B TAT . B TAT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? metalc ? metalc3 C OG SER 54 C SER 54 1_555 G MG MG . C MG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc4 C OG1 THR 204 C THR 204 1_555 G MG MG . C MG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc5 H O2B GSP . C GSP 395 1_555 G MG MG . C MG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc6 H O2G GSP . C GSP 395 1_555 G MG MG . C MG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? # _chem_comp.formula 'C10 H16 N5 O12 P3 S' _chem_comp.formula_weight 523.247 _chem_comp.id TAT _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 TAT doub 432 n y C2 N3 TAT sing 433 n y N1 C6 TAT sing 434 n y N3 C4 TAT doub 435 n y O2' C2' TAT sing 436 n n O3' C3' TAT sing 437 n n C6 N6 TAT sing 438 n n C6 C5 TAT doub 439 n y C4 C5 TAT sing 440 n y C4 N9 TAT sing 441 n y C5 N7 TAT sing 442 n y C1' N9 TAT sing 443 n n C1' C2' TAT sing 444 n n C1' O4' TAT sing 445 n n N9 C8 TAT sing 446 n y C2' C3' TAT sing 447 n n N7 C8 TAT doub 448 n y C3' C4' TAT sing 449 n n O4' C4' TAT sing 450 n n C4' C5' TAT sing 451 n n O2A PA TAT doub 452 n n C5' O5' TAT sing 453 n n O5' PA TAT sing 454 n n PA O3A TAT sing 455 n n PA S1G TAT sing 456 n n O3A PB TAT sing 457 n n O1B PB TAT doub 458 n n PB O3B TAT sing 459 n n PB O2B TAT sing 460 n n O3B PG TAT sing 461 n n O2G PG TAT doub 462 n n O1A PG TAT sing 463 n n PG O3G TAT sing 464 n n C2 H1 TAT sing 465 n n N6 H2 TAT sing 466 n n N6 H3 TAT sing 467 n n C8 H4 TAT sing 468 n n C1' H5 TAT sing 469 n n O1A H6 TAT sing 470 n n S1G H7 TAT sing 471 n n C2' H8 TAT sing 472 n n O2' H9 TAT sing 473 n n O2B H10 TAT sing 474 n n C3' H11 TAT sing 475 n n O3' H12 TAT sing 476 n n O3G H13 TAT sing 477 n n C4' H14 TAT sing 478 n n C5' H15 TAT sing 479 n n C5' H16 TAT sing 480 n n # _atom_sites.entry_id 3MAA _atom_sites.fract_transf_matrix[1][1] 0.008421 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014086 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FKP A 1 101 101 FKP FKP . E 5 CA A 1 581 581 CA CA . F 6 TAT B 1 1 1 TAT TAT . G 7 MG C 1 396 396 MG MG . H 8 GSP C 1 395 395 GSP GSP . I 9 CL C 1 397 397 CL CL . J 10 HOH A 1 2 2 HOH HOH . J 10 HOH A 2 18 18 HOH HOH . K 10 HOH B 1 8 8 HOH HOH . K 10 HOH B 2 15 15 HOH HOH . K 10 HOH B 3 16 16 HOH HOH . K 10 HOH B 4 17 17 HOH HOH . K 10 HOH B 5 1082 1082 HOH HOH . L 10 HOH C 1 398 398 HOH HOH . L 10 HOH C 2 399 399 HOH HOH . L 10 HOH C 3 400 400 HOH HOH . L 10 HOH C 4 401 401 HOH HOH . L 10 HOH C 5 402 402 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 TAT . . . F 6 4.557 17.77 15.565 1 79.04 ? N1 TAT 1 B 1 HETATM 2 C C2 TAT . . . F 6 5.226 16.618 15.569 1 78.76 ? C2 TAT 1 B 1 HETATM 3 N N3 TAT . . . F 6 4.623 15.452 15.79 1 75.91 ? N3 TAT 1 B 1 HETATM 4 C C4 TAT . . . F 6 3.298 15.399 16.023 1 72.4 ? C4 TAT 1 B 1 HETATM 5 C C5 TAT . . . F 6 2.565 16.582 16.031 1 74.78 ? C5 TAT 1 B 1 HETATM 6 C C6 TAT . . . F 6 3.234 17.794 15.792 1 74.81 ? C6 TAT 1 B 1 HETATM 7 N N6 TAT . . . F 6 2.601 18.966 15.782 1 68.39 ? N6 TAT 1 B 1 HETATM 8 N N7 TAT . . . F 6 1.301 16.243 16.282 1 73.7 ? N7 TAT 1 B 1 HETATM 9 C C8 TAT . . . F 6 1.237 14.917 16.426 1 70.8 ? C8 TAT 1 B 1 HETATM 10 N N9 TAT . . . F 6 2.456 14.395 16.273 1 71.52 ? N9 TAT 1 B 1 HETATM 11 P PA TAT . . . F 6 -0.571 8.701 17.78 1 92.92 ? PA TAT 1 B 1 HETATM 12 P PB TAT . . . F 6 -0.093 9.019 20.775 1 103.15 ? PB TAT 1 B 1 HETATM 13 P PG TAT . . . F 6 -0.349 7.314 23.133 1 108.54 ? PG TAT 1 B 1 HETATM 14 C C1' TAT . . . F 6 2.829 12.938 16.36 1 73.06 ? C1' TAT 1 B 1 HETATM 15 O O1A TAT . . . F 6 0.537 6.008 22.718 1 103.96 ? O1A TAT 1 B 1 HETATM 16 O O1B TAT . . . F 6 -0.198 10.38 21.369 1 98.67 ? O1B TAT 1 B 1 HETATM 17 S S1G TAT . . . F 6 0.586 7.064 17.744 1 89.88 ? S1G TAT 1 B 1 HETATM 18 C C2' TAT . . . F 6 2.727 12.306 17.762 1 72.82 ? C2' TAT 1 B 1 HETATM 19 O O2' TAT . . . F 6 3.76 12.754 18.659 1 70.43 ? O2' TAT 1 B 1 HETATM 20 O O2A TAT . . . F 6 -1.738 8.581 16.872 1 87.09 ? O2A TAT 1 B 1 HETATM 21 O O2B TAT . . . F 6 1.243 8.447 20.488 1 102.33 ? O2B TAT 1 B 1 HETATM 22 O O2G TAT . . . F 6 -1.418 6.962 24.106 1 107.2 ? O2G TAT 1 B 1 HETATM 23 C C3' TAT . . . F 6 2.922 10.827 17.394 1 73.94 ? C3' TAT 1 B 1 HETATM 24 O O3' TAT . . . F 6 4.322 10.476 17.336 1 77.07 ? O3' TAT 1 B 1 HETATM 25 O O3A TAT . . . F 6 -0.996 9.063 19.359 1 98.28 ? O3A TAT 1 B 1 HETATM 26 O O3B TAT . . . F 6 -0.925 7.971 21.735 1 107.09 ? O3B TAT 1 B 1 HETATM 27 O O3G TAT . . . F 6 0.69 8.376 23.791 1 107.71 ? O3G TAT 1 B 1 HETATM 28 C C4' TAT . . . F 6 2.296 10.722 15.982 1 76.07 ? C4' TAT 1 B 1 HETATM 29 O O4' TAT . . . F 6 1.933 12.085 15.596 1 72.9 ? O4' TAT 1 B 1 HETATM 30 C C5' TAT . . . F 6 1.028 9.855 15.966 1 81.24 ? C5' TAT 1 B 1 HETATM 31 O O5' TAT . . . F 6 0.341 9.931 17.23 1 89.14 ? O5' TAT 1 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 31 #