data_3MAK # _model_server_result.job_id '_qljJdUIqZLh8jtfCdHmqQ' _model_server_result.datetime_utc '2024-11-14 23:21:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":210}' # _entry.id 3MAK # _exptl.entry_id 3MAK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.323 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLUTATHIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 129.55 _cell.angle_gamma 90 _cell.entry_id 3MAK _cell.length_a 71.352 _cell.length_b 63.137 _cell.length_c 54.24 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 36.814607 0 41.822794 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N3 O6 S' _chem_comp.formula_weight 307.323 _chem_comp.id GSH _chem_comp.mon_nstd_flag . _chem_comp.name GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GSH sing 129 n n N1 HN11 GSH sing 130 n n N1 HN12 GSH sing 131 n n CA1 C1 GSH sing 132 n n CA1 CB1 GSH sing 133 n n CA1 HA1 GSH sing 134 n n C1 O11 GSH doub 135 n n C1 O12 GSH sing 136 n n O12 H12 GSH sing 137 n n CB1 CG1 GSH sing 138 n n CB1 HB12 GSH sing 139 n n CB1 HB13 GSH sing 140 n n CG1 CD1 GSH sing 141 n n CG1 HG12 GSH sing 142 n n CG1 HG13 GSH sing 143 n n CD1 OE1 GSH doub 144 n n CD1 N2 GSH sing 145 n n N2 CA2 GSH sing 146 n n N2 HN2 GSH sing 147 n n CA2 C2 GSH sing 148 n n CA2 CB2 GSH sing 149 n n CA2 HA2 GSH sing 150 n n C2 O2 GSH doub 151 n n C2 N3 GSH sing 152 n n CB2 SG2 GSH sing 153 n n CB2 HB22 GSH sing 154 n n CB2 HB23 GSH sing 155 n n SG2 HSG GSH sing 156 n n N3 CA3 GSH sing 157 n n N3 HN3 GSH sing 158 n n CA3 C3 GSH sing 159 n n CA3 HA31 GSH sing 160 n n CA3 HA32 GSH sing 161 n n C3 O31 GSH doub 162 n n C3 O32 GSH sing 163 n n O32 H32 GSH sing 164 n n # _atom_sites.entry_id 3MAK _atom_sites.fract_transf_matrix[1][1] 0.014015 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.011574 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015839 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GSH A 1 210 210 GSH GTT . C 3 HOH A 1 211 211 HOH HOH . C 3 HOH A 2 212 212 HOH HOH . C 3 HOH A 3 213 1 HOH HOH . C 3 HOH A 4 214 2 HOH HOH . C 3 HOH A 5 215 3 HOH HOH . C 3 HOH A 6 216 4 HOH HOH . C 3 HOH A 7 217 5 HOH HOH . C 3 HOH A 8 218 6 HOH HOH . C 3 HOH A 9 219 7 HOH HOH . C 3 HOH A 10 220 220 HOH HOH . C 3 HOH A 11 221 8 HOH HOH . C 3 HOH A 12 222 9 HOH HOH . C 3 HOH A 13 223 10 HOH HOH . C 3 HOH A 14 224 224 HOH HOH . C 3 HOH A 15 225 225 HOH HOH . C 3 HOH A 16 226 11 HOH HOH . C 3 HOH A 17 227 227 HOH HOH . C 3 HOH A 18 228 12 HOH HOH . C 3 HOH A 19 229 13 HOH HOH . C 3 HOH A 20 230 230 HOH HOH . C 3 HOH A 21 231 14 HOH HOH . C 3 HOH A 22 232 15 HOH HOH . C 3 HOH A 23 233 16 HOH HOH . C 3 HOH A 24 234 17 HOH HOH . C 3 HOH A 25 235 18 HOH HOH . C 3 HOH A 26 236 19 HOH HOH . C 3 HOH A 27 237 20 HOH HOH . C 3 HOH A 28 238 21 HOH HOH . C 3 HOH A 29 239 22 HOH HOH . C 3 HOH A 30 240 23 HOH HOH . C 3 HOH A 31 241 24 HOH HOH . C 3 HOH A 32 242 25 HOH HOH . C 3 HOH A 33 243 26 HOH HOH . C 3 HOH A 34 244 244 HOH HOH . C 3 HOH A 35 245 27 HOH HOH . C 3 HOH A 36 246 28 HOH HOH . C 3 HOH A 37 247 247 HOH HOH . C 3 HOH A 38 248 248 HOH HOH . C 3 HOH A 39 249 249 HOH HOH . C 3 HOH A 40 250 29 HOH HOH . C 3 HOH A 41 251 251 HOH HOH . C 3 HOH A 42 252 252 HOH HOH . C 3 HOH A 43 253 30 HOH HOH . C 3 HOH A 44 254 254 HOH HOH . C 3 HOH A 45 255 255 HOH HOH . C 3 HOH A 46 256 256 HOH HOH . C 3 HOH A 47 257 257 HOH HOH . C 3 HOH A 48 258 258 HOH HOH . C 3 HOH A 49 259 31 HOH HOH . C 3 HOH A 50 260 32 HOH HOH . C 3 HOH A 51 261 261 HOH HOH . C 3 HOH A 52 262 262 HOH HOH . C 3 HOH A 53 263 263 HOH HOH . C 3 HOH A 54 264 264 HOH HOH . C 3 HOH A 55 265 265 HOH HOH . C 3 HOH A 56 266 266 HOH HOH . C 3 HOH A 57 267 267 HOH HOH . C 3 HOH A 58 268 268 HOH HOH . C 3 HOH A 59 269 269 HOH HOH . C 3 HOH A 60 270 270 HOH HOH . C 3 HOH A 61 271 271 HOH HOH . C 3 HOH A 62 272 272 HOH HOH . C 3 HOH A 63 273 273 HOH HOH . C 3 HOH A 64 274 274 HOH HOH . C 3 HOH A 65 275 275 HOH HOH . C 3 HOH A 66 276 276 HOH HOH . C 3 HOH A 67 277 277 HOH HOH . C 3 HOH A 68 278 278 HOH HOH . C 3 HOH A 69 279 279 HOH HOH . C 3 HOH A 70 280 280 HOH HOH . C 3 HOH A 71 281 281 HOH HOH . C 3 HOH A 72 282 282 HOH HOH . C 3 HOH A 73 283 283 HOH HOH . C 3 HOH A 74 284 284 HOH HOH . C 3 HOH A 75 285 285 HOH HOH . C 3 HOH A 76 286 286 HOH HOH . C 3 HOH A 77 287 287 HOH HOH . C 3 HOH A 78 288 288 HOH HOH . C 3 HOH A 79 289 289 HOH HOH . C 3 HOH A 80 290 290 HOH HOH . C 3 HOH A 81 291 291 HOH HOH . C 3 HOH A 82 292 292 HOH HOH . C 3 HOH A 83 293 33 HOH HOH . C 3 HOH A 84 294 34 HOH HOH . C 3 HOH A 85 295 35 HOH HOH . C 3 HOH A 86 296 36 HOH HOH . C 3 HOH A 87 297 37 HOH HOH . C 3 HOH A 88 298 38 HOH HOH . C 3 HOH A 89 299 39 HOH HOH . C 3 HOH A 90 300 40 HOH HOH . C 3 HOH A 91 301 41 HOH HOH . C 3 HOH A 92 302 42 HOH HOH . C 3 HOH A 93 303 43 HOH HOH . C 3 HOH A 94 304 44 HOH HOH . C 3 HOH A 95 305 45 HOH HOH . C 3 HOH A 96 306 46 HOH HOH . C 3 HOH A 97 307 47 HOH HOH . C 3 HOH A 98 308 48 HOH HOH . C 3 HOH A 99 309 49 HOH HOH . C 3 HOH A 100 310 50 HOH HOH . C 3 HOH A 101 311 51 HOH HOH . C 3 HOH A 102 312 52 HOH HOH . C 3 HOH A 103 313 53 HOH HOH . C 3 HOH A 104 314 54 HOH HOH . C 3 HOH A 105 315 55 HOH HOH . C 3 HOH A 106 316 56 HOH HOH . C 3 HOH A 107 317 57 HOH HOH . C 3 HOH A 108 318 58 HOH HOH . C 3 HOH A 109 319 59 HOH HOH . C 3 HOH A 110 320 60 HOH HOH . C 3 HOH A 111 321 61 HOH HOH . C 3 HOH A 112 322 62 HOH HOH . C 3 HOH A 113 323 63 HOH HOH . C 3 HOH A 114 324 64 HOH HOH . C 3 HOH A 115 325 65 HOH HOH . C 3 HOH A 116 326 66 HOH HOH . C 3 HOH A 117 327 67 HOH HOH . C 3 HOH A 118 328 68 HOH HOH . C 3 HOH A 119 329 69 HOH HOH . C 3 HOH A 120 330 70 HOH HOH . C 3 HOH A 121 331 71 HOH HOH . C 3 HOH A 122 332 72 HOH HOH . C 3 HOH A 123 333 73 HOH HOH . C 3 HOH A 124 334 74 HOH HOH . C 3 HOH A 125 335 75 HOH HOH . C 3 HOH A 126 336 76 HOH HOH . C 3 HOH A 127 337 77 HOH HOH . C 3 HOH A 128 338 78 HOH HOH . C 3 HOH A 129 339 79 HOH HOH . C 3 HOH A 130 340 80 HOH HOH . C 3 HOH A 131 341 81 HOH HOH . C 3 HOH A 132 342 82 HOH HOH . C 3 HOH A 133 343 83 HOH HOH . C 3 HOH A 134 344 84 HOH HOH . C 3 HOH A 135 345 85 HOH HOH . C 3 HOH A 136 346 86 HOH HOH . C 3 HOH A 137 347 87 HOH HOH . C 3 HOH A 138 348 88 HOH HOH . C 3 HOH A 139 349 90 HOH HOH . C 3 HOH A 140 350 91 HOH HOH . C 3 HOH A 141 351 92 HOH HOH . C 3 HOH A 142 352 93 HOH HOH . C 3 HOH A 143 353 94 HOH HOH . C 3 HOH A 144 354 95 HOH HOH . C 3 HOH A 145 355 96 HOH HOH . C 3 HOH A 146 356 97 HOH HOH . C 3 HOH A 147 357 99 HOH HOH . C 3 HOH A 148 358 100 HOH HOH . C 3 HOH A 149 359 101 HOH HOH . C 3 HOH A 150 360 102 HOH HOH . C 3 HOH A 151 361 103 HOH HOH . C 3 HOH A 152 362 104 HOH HOH . C 3 HOH A 153 363 105 HOH HOH . C 3 HOH A 154 364 106 HOH HOH . C 3 HOH A 155 365 107 HOH HOH . C 3 HOH A 156 366 108 HOH HOH . C 3 HOH A 157 367 109 HOH HOH . C 3 HOH A 158 368 110 HOH HOH . C 3 HOH A 159 369 111 HOH HOH . C 3 HOH A 160 370 112 HOH HOH . C 3 HOH A 161 371 113 HOH HOH . C 3 HOH A 162 372 114 HOH HOH . C 3 HOH A 163 373 115 HOH HOH . C 3 HOH A 164 374 116 HOH HOH . C 3 HOH A 165 375 117 HOH HOH . C 3 HOH A 166 376 122 HOH HOH . C 3 HOH A 167 377 124 HOH HOH . C 3 HOH A 168 378 125 HOH HOH . C 3 HOH A 169 379 126 HOH HOH . C 3 HOH A 170 380 127 HOH HOH . C 3 HOH A 171 381 128 HOH HOH . C 3 HOH A 172 382 130 HOH HOH . C 3 HOH A 173 383 131 HOH HOH . C 3 HOH A 174 384 133 HOH HOH . C 3 HOH A 175 385 134 HOH HOH . C 3 HOH A 176 386 135 HOH HOH . C 3 HOH A 177 387 136 HOH HOH . C 3 HOH A 178 388 137 HOH HOH . C 3 HOH A 179 389 138 HOH HOH . C 3 HOH A 180 390 139 HOH HOH . C 3 HOH A 181 391 140 HOH HOH . C 3 HOH A 182 392 142 HOH HOH . C 3 HOH A 183 393 143 HOH HOH . C 3 HOH A 184 394 144 HOH HOH . C 3 HOH A 185 395 147 HOH HOH . C 3 HOH A 186 396 150 HOH HOH . C 3 HOH A 187 397 152 HOH HOH . C 3 HOH A 188 398 153 HOH HOH . C 3 HOH A 189 399 155 HOH HOH . C 3 HOH A 190 400 156 HOH HOH . C 3 HOH A 191 401 161 HOH HOH . C 3 HOH A 192 402 165 HOH HOH . C 3 HOH A 193 403 166 HOH HOH . C 3 HOH A 194 404 169 HOH HOH . C 3 HOH A 195 405 170 HOH HOH . C 3 HOH A 196 406 173 HOH HOH . C 3 HOH A 197 407 174 HOH HOH . C 3 HOH A 198 408 176 HOH HOH . C 3 HOH A 199 409 177 HOH HOH . C 3 HOH A 200 410 178 HOH HOH . C 3 HOH A 201 411 179 HOH HOH . C 3 HOH A 202 412 181 HOH HOH . C 3 HOH A 203 413 182 HOH HOH . C 3 HOH A 204 414 185 HOH HOH . C 3 HOH A 205 415 186 HOH HOH . C 3 HOH A 206 416 187 HOH HOH . C 3 HOH A 207 417 190 HOH HOH . C 3 HOH A 208 418 192 HOH HOH . C 3 HOH A 209 419 194 HOH HOH . C 3 HOH A 210 420 195 HOH HOH . C 3 HOH A 211 421 200 HOH HOH . C 3 HOH A 212 422 203 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GSH . . . B 2 25.091 -2.091 20.287 1 15.19 ? N1 GSH 210 A 1 HETATM 2 C CA1 GSH . . . B 2 26.493 -1.869 19.953 1 16 ? CA1 GSH 210 A 1 HETATM 3 C C1 GSH . . . B 2 26.661 -0.771 18.929 1 16.82 ? C1 GSH 210 A 1 HETATM 4 O O11 GSH . . . B 2 27.726 -0.124 18.863 1 13.84 ? O11 GSH 210 A 1 HETATM 5 O O12 GSH . . . B 2 25.748 -0.5 18.121 1 18.1 ? O12 GSH 210 A 1 HETATM 6 C CB1 GSH . . . B 2 27.1 -3.16 19.407 1 17.6 ? CB1 GSH 210 A 1 HETATM 7 C CG1 GSH . . . B 2 28.626 -3.146 19.466 1 19.52 ? CG1 GSH 210 A 1 HETATM 8 C CD1 GSH . . . B 2 29.161 -4.417 18.853 1 21.35 ? CD1 GSH 210 A 1 HETATM 9 O OE1 GSH . . . B 2 28.286 -5.414 18.378 1 24.49 ? OE1 GSH 210 A 1 HETATM 10 N N2 GSH . . . B 2 30.478 -4.56 18.777 1 22.33 ? N2 GSH 210 A 1 HETATM 11 C CA2 GSH . . . B 2 31.103 -5.874 18.676 1 22.22 ? CA2 GSH 210 A 1 HETATM 12 C C2 GSH . . . B 2 32.085 -6.019 19.8 1 21.47 ? C2 GSH 210 A 1 HETATM 13 O O2 GSH . . . B 2 32.764 -4.88 20.23 1 20.08 ? O2 GSH 210 A 1 HETATM 14 C CB2 GSH . . . B 2 31.764 -6.049 17.3 1 22.6 ? CB2 GSH 210 A 1 HETATM 15 S SG2 GSH . . . B 2 30.625 -5.745 15.901 1 28.01 ? SG2 GSH 210 A 1 HETATM 16 N N3 GSH . . . B 2 32.276 -7.216 20.374 1 20.8 ? N3 GSH 210 A 1 HETATM 17 C CA3 GSH . . . B 2 33.315 -7.397 21.384 1 21.5 ? CA3 GSH 210 A 1 HETATM 18 C C3 GSH . . . B 2 32.785 -7.578 22.788 1 22.38 ? C3 GSH 210 A 1 HETATM 19 O O31 GSH . . . B 2 33.521 -8.057 23.685 1 21.72 ? O31 GSH 210 A 1 HETATM 20 O O32 GSH . . . B 2 31.606 -7.268 23.076 1 23.86 ? O32 GSH 210 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 378 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #