data_3MAL # _model_server_result.job_id 4oRXsWk2fxE-rPFCGAelmQ _model_server_result.datetime_utc '2024-11-24 03:44:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mal # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":219}' # _entry.id 3MAL # _exptl.entry_id 3MAL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3MAL _cell.length_a 96.13 _cell.length_b 96.13 _cell.length_c 69.343 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3MAL _atom_sites.fract_transf_matrix[1][1] 0.010403 _atom_sites.fract_transf_matrix[1][2] 0.006006 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012012 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014421 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1 1 SO4 SO4 . D 2 SO4 A 1 2 2 SO4 SO4 . E 2 SO4 A 1 3 3 SO4 SO4 . F 3 EDO A 1 219 1 EDO EDO . G 3 EDO B 1 2 2 EDO EDO . H 3 EDO B 1 3 3 EDO EDO . I 4 HOH A 1 4 4 HOH HOH . I 4 HOH A 2 7 7 HOH HOH . I 4 HOH A 3 8 8 HOH HOH . I 4 HOH A 4 10 10 HOH HOH . I 4 HOH A 5 11 11 HOH HOH . I 4 HOH A 6 14 14 HOH HOH . I 4 HOH A 7 15 15 HOH HOH . I 4 HOH A 8 16 16 HOH HOH . I 4 HOH A 9 18 18 HOH HOH . I 4 HOH A 10 19 19 HOH HOH . I 4 HOH A 11 220 220 HOH HOH . I 4 HOH A 12 221 3 HOH HOH . I 4 HOH A 13 222 22 HOH HOH . I 4 HOH A 14 223 23 HOH HOH . I 4 HOH A 15 224 24 HOH HOH . I 4 HOH A 16 225 225 HOH HOH . I 4 HOH A 17 226 226 HOH HOH . I 4 HOH A 18 227 28 HOH HOH . I 4 HOH A 19 228 228 HOH HOH . I 4 HOH A 20 229 30 HOH HOH . I 4 HOH A 21 230 32 HOH HOH . I 4 HOH A 22 231 37 HOH HOH . I 4 HOH A 23 232 232 HOH HOH . I 4 HOH A 24 233 233 HOH HOH . I 4 HOH A 25 234 40 HOH HOH . I 4 HOH A 26 235 42 HOH HOH . I 4 HOH A 27 236 44 HOH HOH . I 4 HOH A 28 237 237 HOH HOH . I 4 HOH A 29 238 238 HOH HOH . I 4 HOH A 30 239 47 HOH HOH . I 4 HOH A 31 240 48 HOH HOH . I 4 HOH A 32 241 51 HOH HOH . I 4 HOH A 33 242 53 HOH HOH . I 4 HOH A 34 243 55 HOH HOH . I 4 HOH A 35 244 244 HOH HOH . I 4 HOH A 36 245 245 HOH HOH . I 4 HOH A 37 246 246 HOH HOH . I 4 HOH A 38 247 56 HOH HOH . I 4 HOH A 39 248 64 HOH HOH . I 4 HOH A 40 249 65 HOH HOH . I 4 HOH A 41 250 250 HOH HOH . I 4 HOH A 42 251 251 HOH HOH . I 4 HOH A 43 252 67 HOH HOH . I 4 HOH A 44 253 253 HOH HOH . I 4 HOH A 45 254 68 HOH HOH . I 4 HOH A 46 255 69 HOH HOH . I 4 HOH A 47 256 256 HOH HOH . I 4 HOH A 48 257 257 HOH HOH . I 4 HOH A 49 258 258 HOH HOH . I 4 HOH A 50 259 72 HOH HOH . I 4 HOH A 51 260 73 HOH HOH . I 4 HOH A 52 261 75 HOH HOH . I 4 HOH A 53 262 262 HOH HOH . I 4 HOH A 54 263 76 HOH HOH . I 4 HOH A 55 264 264 HOH HOH . I 4 HOH A 56 265 77 HOH HOH . I 4 HOH A 57 266 78 HOH HOH . I 4 HOH A 58 267 80 HOH HOH . I 4 HOH A 59 268 81 HOH HOH . I 4 HOH A 60 269 269 HOH HOH . I 4 HOH A 61 270 82 HOH HOH . I 4 HOH A 62 271 84 HOH HOH . I 4 HOH A 63 272 272 HOH HOH . I 4 HOH A 64 273 85 HOH HOH . I 4 HOH A 65 274 86 HOH HOH . I 4 HOH A 66 275 275 HOH HOH . I 4 HOH A 67 276 88 HOH HOH . I 4 HOH A 68 277 91 HOH HOH . I 4 HOH A 69 278 92 HOH HOH . I 4 HOH A 70 279 279 HOH HOH . I 4 HOH A 71 280 93 HOH HOH . I 4 HOH A 72 281 94 HOH HOH . I 4 HOH A 73 282 96 HOH HOH . I 4 HOH A 74 283 97 HOH HOH . I 4 HOH A 75 284 98 HOH HOH . I 4 HOH A 76 285 285 HOH HOH . I 4 HOH A 77 286 101 HOH HOH . I 4 HOH A 78 287 108 HOH HOH . I 4 HOH A 79 288 288 HOH HOH . I 4 HOH A 80 289 289 HOH HOH . I 4 HOH A 81 290 113 HOH HOH . I 4 HOH A 82 291 114 HOH HOH . I 4 HOH A 83 292 115 HOH HOH . I 4 HOH A 84 293 118 HOH HOH . I 4 HOH A 85 294 121 HOH HOH . I 4 HOH A 86 295 124 HOH HOH . I 4 HOH A 87 296 128 HOH HOH . I 4 HOH A 88 297 297 HOH HOH . I 4 HOH A 89 298 131 HOH HOH . I 4 HOH A 90 299 132 HOH HOH . I 4 HOH A 91 300 135 HOH HOH . I 4 HOH A 92 301 136 HOH HOH . I 4 HOH A 93 302 139 HOH HOH . I 4 HOH A 94 303 144 HOH HOH . I 4 HOH A 95 304 148 HOH HOH . I 4 HOH A 96 305 151 HOH HOH . I 4 HOH A 97 306 152 HOH HOH . I 4 HOH A 98 307 153 HOH HOH . I 4 HOH A 99 308 154 HOH HOH . I 4 HOH A 100 309 155 HOH HOH . I 4 HOH A 101 310 156 HOH HOH . I 4 HOH A 102 311 158 HOH HOH . I 4 HOH A 103 312 159 HOH HOH . I 4 HOH A 104 313 160 HOH HOH . I 4 HOH A 105 314 161 HOH HOH . I 4 HOH A 106 315 166 HOH HOH . I 4 HOH A 107 316 169 HOH HOH . I 4 HOH A 108 317 170 HOH HOH . I 4 HOH A 109 318 172 HOH HOH . I 4 HOH A 110 319 175 HOH HOH . I 4 HOH A 111 320 176 HOH HOH . I 4 HOH A 112 321 179 HOH HOH . I 4 HOH A 113 322 183 HOH HOH . I 4 HOH A 114 323 185 HOH HOH . I 4 HOH A 115 324 187 HOH HOH . I 4 HOH A 116 325 193 HOH HOH . I 4 HOH A 117 326 194 HOH HOH . I 4 HOH A 118 327 195 HOH HOH . I 4 HOH A 119 328 198 HOH HOH . I 4 HOH A 120 329 199 HOH HOH . I 4 HOH A 121 330 200 HOH HOH . I 4 HOH A 122 331 203 HOH HOH . I 4 HOH A 123 332 204 HOH HOH . I 4 HOH A 124 333 206 HOH HOH . I 4 HOH A 125 334 207 HOH HOH . I 4 HOH A 126 335 210 HOH HOH . I 4 HOH A 127 336 213 HOH HOH . I 4 HOH A 128 337 215 HOH HOH . I 4 HOH A 129 338 219 HOH HOH . I 4 HOH A 130 339 33 HOH HOH . I 4 HOH A 131 340 164 HOH HOH . J 4 HOH B 1 5 5 HOH HOH . J 4 HOH B 2 6 6 HOH HOH . J 4 HOH B 3 9 9 HOH HOH . J 4 HOH B 4 12 12 HOH HOH . J 4 HOH B 5 13 13 HOH HOH . J 4 HOH B 6 17 17 HOH HOH . J 4 HOH B 7 219 2 HOH HOH . J 4 HOH B 8 220 20 HOH HOH . J 4 HOH B 9 221 221 HOH HOH . J 4 HOH B 10 222 222 HOH HOH . J 4 HOH B 11 223 223 HOH HOH . J 4 HOH B 12 224 21 HOH HOH . J 4 HOH B 13 225 25 HOH HOH . J 4 HOH B 14 226 26 HOH HOH . J 4 HOH B 15 227 227 HOH HOH . J 4 HOH B 16 228 27 HOH HOH . J 4 HOH B 17 229 229 HOH HOH . J 4 HOH B 18 230 29 HOH HOH . J 4 HOH B 19 231 231 HOH HOH . J 4 HOH B 20 232 31 HOH HOH . J 4 HOH B 21 234 34 HOH HOH . J 4 HOH B 22 235 235 HOH HOH . J 4 HOH B 23 236 236 HOH HOH . J 4 HOH B 24 237 35 HOH HOH . J 4 HOH B 25 238 36 HOH HOH . J 4 HOH B 26 239 239 HOH HOH . J 4 HOH B 27 240 240 HOH HOH . J 4 HOH B 28 241 38 HOH HOH . J 4 HOH B 29 242 39 HOH HOH . J 4 HOH B 30 243 243 HOH HOH . J 4 HOH B 31 244 41 HOH HOH . J 4 HOH B 32 245 43 HOH HOH . J 4 HOH B 33 246 45 HOH HOH . J 4 HOH B 34 247 46 HOH HOH . J 4 HOH B 35 248 248 HOH HOH . J 4 HOH B 36 249 249 HOH HOH . J 4 HOH B 37 250 49 HOH HOH . J 4 HOH B 38 251 52 HOH HOH . J 4 HOH B 39 252 252 HOH HOH . J 4 HOH B 40 253 54 HOH HOH . J 4 HOH B 41 254 254 HOH HOH . J 4 HOH B 42 255 57 HOH HOH . J 4 HOH B 43 256 58 HOH HOH . J 4 HOH B 44 257 59 HOH HOH . J 4 HOH B 45 258 60 HOH HOH . J 4 HOH B 46 259 63 HOH HOH . J 4 HOH B 47 260 66 HOH HOH . J 4 HOH B 48 261 261 HOH HOH . J 4 HOH B 49 262 70 HOH HOH . J 4 HOH B 50 263 263 HOH HOH . J 4 HOH B 51 264 71 HOH HOH . J 4 HOH B 52 265 265 HOH HOH . J 4 HOH B 53 266 266 HOH HOH . J 4 HOH B 54 267 74 HOH HOH . J 4 HOH B 55 268 79 HOH HOH . J 4 HOH B 56 269 83 HOH HOH . J 4 HOH B 57 270 270 HOH HOH . J 4 HOH B 58 271 271 HOH HOH . J 4 HOH B 59 272 87 HOH HOH . J 4 HOH B 60 273 273 HOH HOH . J 4 HOH B 61 274 89 HOH HOH . J 4 HOH B 62 275 90 HOH HOH . J 4 HOH B 63 276 95 HOH HOH . J 4 HOH B 64 277 277 HOH HOH . J 4 HOH B 65 278 99 HOH HOH . J 4 HOH B 66 279 100 HOH HOH . J 4 HOH B 67 280 102 HOH HOH . J 4 HOH B 68 281 281 HOH HOH . J 4 HOH B 69 282 282 HOH HOH . J 4 HOH B 70 283 103 HOH HOH . J 4 HOH B 71 284 104 HOH HOH . J 4 HOH B 72 285 107 HOH HOH . J 4 HOH B 73 286 286 HOH HOH . J 4 HOH B 74 287 287 HOH HOH . J 4 HOH B 75 288 109 HOH HOH . J 4 HOH B 76 289 110 HOH HOH . J 4 HOH B 77 290 112 HOH HOH . J 4 HOH B 78 291 291 HOH HOH . J 4 HOH B 79 292 116 HOH HOH . J 4 HOH B 80 293 117 HOH HOH . J 4 HOH B 81 294 119 HOH HOH . J 4 HOH B 82 295 295 HOH HOH . J 4 HOH B 83 296 296 HOH HOH . J 4 HOH B 84 297 120 HOH HOH . J 4 HOH B 85 298 122 HOH HOH . J 4 HOH B 86 299 123 HOH HOH . J 4 HOH B 87 300 125 HOH HOH . J 4 HOH B 88 301 126 HOH HOH . J 4 HOH B 89 302 127 HOH HOH . J 4 HOH B 90 303 129 HOH HOH . J 4 HOH B 91 304 130 HOH HOH . J 4 HOH B 92 305 133 HOH HOH . J 4 HOH B 93 306 137 HOH HOH . J 4 HOH B 94 307 138 HOH HOH . J 4 HOH B 95 308 140 HOH HOH . J 4 HOH B 96 309 141 HOH HOH . J 4 HOH B 97 310 142 HOH HOH . J 4 HOH B 98 311 143 HOH HOH . J 4 HOH B 99 312 145 HOH HOH . J 4 HOH B 100 313 146 HOH HOH . J 4 HOH B 101 314 147 HOH HOH . J 4 HOH B 102 315 149 HOH HOH . J 4 HOH B 103 316 157 HOH HOH . J 4 HOH B 104 317 162 HOH HOH . J 4 HOH B 105 318 163 HOH HOH . J 4 HOH B 106 320 165 HOH HOH . J 4 HOH B 107 321 167 HOH HOH . J 4 HOH B 108 322 168 HOH HOH . J 4 HOH B 109 323 171 HOH HOH . J 4 HOH B 110 324 173 HOH HOH . J 4 HOH B 111 325 177 HOH HOH . J 4 HOH B 112 326 178 HOH HOH . J 4 HOH B 113 327 180 HOH HOH . J 4 HOH B 114 328 181 HOH HOH . J 4 HOH B 115 329 186 HOH HOH . J 4 HOH B 116 330 190 HOH HOH . J 4 HOH B 117 331 191 HOH HOH . J 4 HOH B 118 332 192 HOH HOH . J 4 HOH B 119 333 197 HOH HOH . J 4 HOH B 120 334 201 HOH HOH . J 4 HOH B 121 335 202 HOH HOH . J 4 HOH B 122 336 205 HOH HOH . J 4 HOH B 123 337 208 HOH HOH . J 4 HOH B 124 338 209 HOH HOH . J 4 HOH B 125 339 211 HOH HOH . J 4 HOH B 126 340 212 HOH HOH . J 4 HOH B 127 341 214 HOH HOH . J 4 HOH B 128 342 216 HOH HOH . J 4 HOH B 129 343 218 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 3 -20.464 13.945 17.672 1 18.38 ? C1 EDO 219 A 1 HETATM 2 O O1 EDO . . . F 3 -20.794 14.48 18.975 1 21.52 ? O1 EDO 219 A 1 HETATM 3 C C2 EDO . . . F 3 -19.564 12.753 17.942 1 18.16 ? C2 EDO 219 A 1 HETATM 4 O O2 EDO . . . F 3 -19.83 11.762 16.978 1 20.63 ? O2 EDO 219 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #