data_3MAO # _model_server_result.job_id BeIyNM-ZCtyjg8ydoGxALg _model_server_result.datetime_utc '2024-12-23 09:10:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mao # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":4}' # _entry.id 3MAO # _exptl.entry_id 3MAO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MAO _cell.length_a 34.054 _cell.length_b 47.473 _cell.length_c 57.809 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MAO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B FE FE . A FE 1 1_555 A SG CYS 16 A CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc2 B FE FE . A FE 1 1_555 A SG CYS 19 A CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc3 B FE FE . A FE 1 1_555 A SG CYS 64 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc4 B FE FE . A FE 1 1_555 A SG CYS 67 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc5 C NA NA . A NA 2 1_555 G O HOH . A HOH 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc6 C NA NA . A NA 2 1_555 A O GLU 53 A GLU 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc7 C NA NA . A NA 2 1_555 A O ARG 56 A ARG 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc8 C NA NA . A NA 2 1_555 A O ALA 59 A ALA 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc9 C NA NA . A NA 2 1_555 G O HOH . A HOH 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc10 C NA NA . A NA 2 1_555 G O HOH . A HOH 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc11 D NA NA . A NA 3 1_555 A OE1 GLU 41 A GLU 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc12 D NA NA . A NA 3 1_555 A O THR 42 A THR 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc13 D NA NA . A NA 3 1_555 G O HOH . A HOH 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc14 D NA NA . A NA 3 1_555 G O HOH . A HOH 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 237 n n C1 C3 MLI sing 238 n n C1 H11 MLI sing 239 n n C1 H12 MLI sing 240 n n C2 O6 MLI doub 241 n n C2 O7 MLI sing 242 n n C3 O8 MLI doub 243 n n C3 O9 MLI sing 244 n n # _atom_sites.entry_id 3MAO _atom_sites.fract_transf_matrix[1][1] 0.029365 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021065 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017298 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 1 1 FE FE . C 3 NA A 1 2 2 NA NA . D 3 NA A 1 3 3 NA NA . E 4 MLI A 1 4 4 MLI MLI . F 4 MLI A 1 5 5 MLI MLI . G 5 HOH A 1 6 6 HOH HOH . G 5 HOH A 2 7 7 HOH HOH . G 5 HOH A 3 8 8 HOH HOH . G 5 HOH A 4 113 113 HOH HOH . G 5 HOH A 5 114 114 HOH HOH . G 5 HOH A 6 115 115 HOH HOH . G 5 HOH A 7 116 116 HOH HOH . G 5 HOH A 8 117 117 HOH HOH . G 5 HOH A 9 118 118 HOH HOH . G 5 HOH A 10 119 119 HOH HOH . G 5 HOH A 11 120 120 HOH HOH . G 5 HOH A 12 121 121 HOH HOH . G 5 HOH A 13 122 122 HOH HOH . G 5 HOH A 14 123 123 HOH HOH . G 5 HOH A 15 124 124 HOH HOH . G 5 HOH A 16 125 125 HOH HOH . G 5 HOH A 17 126 126 HOH HOH . G 5 HOH A 18 127 127 HOH HOH . G 5 HOH A 19 128 128 HOH HOH . G 5 HOH A 20 129 129 HOH HOH . G 5 HOH A 21 130 130 HOH HOH . G 5 HOH A 22 131 131 HOH HOH . G 5 HOH A 23 132 132 HOH HOH . G 5 HOH A 24 133 133 HOH HOH . G 5 HOH A 25 134 134 HOH HOH . G 5 HOH A 26 135 135 HOH HOH . G 5 HOH A 27 136 136 HOH HOH . G 5 HOH A 28 137 137 HOH HOH . G 5 HOH A 29 138 138 HOH HOH . G 5 HOH A 30 139 139 HOH HOH . G 5 HOH A 31 140 140 HOH HOH . G 5 HOH A 32 141 141 HOH HOH . G 5 HOH A 33 142 142 HOH HOH . G 5 HOH A 34 143 143 HOH HOH . G 5 HOH A 35 144 144 HOH HOH . G 5 HOH A 36 145 145 HOH HOH . G 5 HOH A 37 146 146 HOH HOH . G 5 HOH A 38 147 147 HOH HOH . G 5 HOH A 39 148 148 HOH HOH . G 5 HOH A 40 149 149 HOH HOH . G 5 HOH A 41 150 150 HOH HOH . G 5 HOH A 42 151 151 HOH HOH . G 5 HOH A 43 152 152 HOH HOH . G 5 HOH A 44 153 153 HOH HOH . G 5 HOH A 45 154 154 HOH HOH . G 5 HOH A 46 155 155 HOH HOH . G 5 HOH A 47 156 156 HOH HOH . G 5 HOH A 48 157 157 HOH HOH . G 5 HOH A 49 158 158 HOH HOH . G 5 HOH A 50 159 159 HOH HOH . G 5 HOH A 51 160 160 HOH HOH . G 5 HOH A 52 161 161 HOH HOH . G 5 HOH A 53 162 162 HOH HOH . G 5 HOH A 54 163 163 HOH HOH . G 5 HOH A 55 164 164 HOH HOH . G 5 HOH A 56 165 165 HOH HOH . G 5 HOH A 57 166 166 HOH HOH . G 5 HOH A 58 167 167 HOH HOH . G 5 HOH A 59 168 168 HOH HOH . G 5 HOH A 60 169 169 HOH HOH . G 5 HOH A 61 170 170 HOH HOH . G 5 HOH A 62 171 171 HOH HOH . G 5 HOH A 63 172 172 HOH HOH . G 5 HOH A 64 173 173 HOH HOH . G 5 HOH A 65 174 174 HOH HOH . G 5 HOH A 66 175 175 HOH HOH . G 5 HOH A 67 176 176 HOH HOH . G 5 HOH A 68 177 177 HOH HOH . G 5 HOH A 69 178 178 HOH HOH . G 5 HOH A 70 179 179 HOH HOH . G 5 HOH A 71 180 180 HOH HOH . G 5 HOH A 72 181 181 HOH HOH . G 5 HOH A 73 182 182 HOH HOH . G 5 HOH A 74 183 183 HOH HOH . G 5 HOH A 75 184 184 HOH HOH . G 5 HOH A 76 185 185 HOH HOH . G 5 HOH A 77 186 186 HOH HOH . G 5 HOH A 78 187 187 HOH HOH . G 5 HOH A 79 188 188 HOH HOH . G 5 HOH A 80 189 189 HOH HOH . G 5 HOH A 81 190 190 HOH HOH . G 5 HOH A 82 191 191 HOH HOH . G 5 HOH A 83 192 192 HOH HOH . G 5 HOH A 84 193 193 HOH HOH . G 5 HOH A 85 194 194 HOH HOH . G 5 HOH A 86 195 195 HOH HOH . G 5 HOH A 87 196 196 HOH HOH . G 5 HOH A 88 197 197 HOH HOH . G 5 HOH A 89 198 198 HOH HOH . G 5 HOH A 90 199 199 HOH HOH . G 5 HOH A 91 200 200 HOH HOH . G 5 HOH A 92 201 201 HOH HOH . G 5 HOH A 93 202 202 HOH HOH . G 5 HOH A 94 203 203 HOH HOH . G 5 HOH A 95 204 204 HOH HOH . G 5 HOH A 96 205 205 HOH HOH . G 5 HOH A 97 206 206 HOH HOH . G 5 HOH A 98 207 207 HOH HOH . G 5 HOH A 99 208 208 HOH HOH . G 5 HOH A 100 209 209 HOH HOH . G 5 HOH A 101 210 210 HOH HOH . G 5 HOH A 102 211 211 HOH HOH . G 5 HOH A 103 212 212 HOH HOH . G 5 HOH A 104 213 213 HOH HOH . G 5 HOH A 105 214 214 HOH HOH . G 5 HOH A 106 215 215 HOH HOH . G 5 HOH A 107 216 216 HOH HOH . G 5 HOH A 108 217 217 HOH HOH . G 5 HOH A 109 218 218 HOH HOH . G 5 HOH A 110 219 219 HOH HOH . G 5 HOH A 111 220 220 HOH HOH . G 5 HOH A 112 221 221 HOH HOH . G 5 HOH A 113 222 222 HOH HOH . G 5 HOH A 114 223 223 HOH HOH . G 5 HOH A 115 224 224 HOH HOH . G 5 HOH A 116 225 225 HOH HOH . G 5 HOH A 117 226 226 HOH HOH . G 5 HOH A 118 227 227 HOH HOH . G 5 HOH A 119 228 228 HOH HOH . G 5 HOH A 120 229 229 HOH HOH . G 5 HOH A 121 230 230 HOH HOH . G 5 HOH A 122 231 231 HOH HOH . G 5 HOH A 123 232 232 HOH HOH . G 5 HOH A 124 233 233 HOH HOH . G 5 HOH A 125 234 234 HOH HOH . G 5 HOH A 126 235 235 HOH HOH . G 5 HOH A 127 236 236 HOH HOH . G 5 HOH A 128 237 237 HOH HOH . G 5 HOH A 129 238 238 HOH HOH . G 5 HOH A 130 239 239 HOH HOH . G 5 HOH A 131 240 240 HOH HOH . G 5 HOH A 132 241 241 HOH HOH . G 5 HOH A 133 242 242 HOH HOH . G 5 HOH A 134 243 243 HOH HOH . G 5 HOH A 135 244 244 HOH HOH . G 5 HOH A 136 245 245 HOH HOH . G 5 HOH A 137 246 246 HOH HOH . G 5 HOH A 138 247 247 HOH HOH . G 5 HOH A 139 248 248 HOH HOH . G 5 HOH A 140 249 249 HOH HOH . G 5 HOH A 141 250 250 HOH HOH . G 5 HOH A 142 251 251 HOH HOH . G 5 HOH A 143 252 252 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . A . E 4 -9.169 -10.101 37.884 0.5 9.51 ? C1 MLI 4 A 1 HETATM 2 C C1 MLI . B . E 4 -8.763 -10.31 38.525 0.5 5.13 ? C1 MLI 4 A 1 HETATM 3 C C2 MLI . A . E 4 -8.104 -9.048 38.109 0.5 15.24 ? C2 MLI 4 A 1 HETATM 4 C C2 MLI . B . E 4 -7.946 -9.063 38.243 0.5 6.21 ? C2 MLI 4 A 1 HETATM 5 C C3 MLI . A . E 4 -10.468 -9.682 38.562 0.5 16.62 ? C3 MLI 4 A 1 HETATM 6 C C3 MLI . B . E 4 -10.179 -10.198 38.029 0.5 9.73 ? C3 MLI 4 A 1 HETATM 7 O O6 MLI . A . E 4 -7.154 -9.035 37.303 0.5 8.86 ? O6 MLI 4 A 1 HETATM 8 O O6 MLI . B . E 4 -7.203 -9.027 37.236 0.5 8.49 ? O6 MLI 4 A 1 HETATM 9 O O7 MLI . A . E 4 -8.217 -8.24 39.067 0.5 10.65 ? O7 MLI 4 A 1 HETATM 10 O O7 MLI . B . E 4 -8.102 -8.11 39.045 0.5 10.07 ? O7 MLI 4 A 1 HETATM 11 O O8 MLI . A . E 4 -11.391 -9.192 37.863 0.5 12.56 ? O8 MLI 4 A 1 HETATM 12 O O8 MLI . B . E 4 -10.978 -9.537 38.728 0.5 16.06 ? O8 MLI 4 A 1 HETATM 13 O O9 MLI . A . E 4 -10.589 -9.796 39.8 0.5 12.81 ? O9 MLI 4 A 1 HETATM 14 O O9 MLI . B . E 4 -10.462 -10.804 36.978 0.5 10.28 ? O9 MLI 4 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #