data_3MAS
#
_model_server_result.job_id            Pt42TCVaAfkVie4Jb13KPQ 
_model_server_result.datetime_utc      '2024-10-18 15:24:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3mas 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":415}' 
#
_entry.id    3MAS 
#
_exptl.entry_id    3MAS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3MAS 
_cell.length_a            83.136 
_cell.length_b            83.136 
_cell.length_c            308.508 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3MAS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 E N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 255 n n 
PA O2A NAP sing 256 n n 
PA O5B NAP sing 257 n n 
PA O3 NAP sing 258 n n 
O2A HOA2 NAP sing 259 n n 
O5B C5B NAP sing 260 n n 
C5B C4B NAP sing 261 n n 
C5B H51A NAP sing 262 n n 
C5B H52A NAP sing 263 n n 
C4B O4B NAP sing 264 n n 
C4B C3B NAP sing 265 n n 
C4B H4B NAP sing 266 n n 
O4B C1B NAP sing 267 n n 
C3B O3B NAP sing 268 n n 
C3B C2B NAP sing 269 n n 
C3B H3B NAP sing 270 n n 
O3B HO3A NAP sing 271 n n 
C2B O2B NAP sing 272 n n 
C2B C1B NAP sing 273 n n 
C2B H2B NAP sing 274 n n 
O2B P2B NAP sing 275 n n 
C1B N9A NAP sing 276 n n 
C1B H1B NAP sing 277 n n 
N9A C8A NAP sing 278 n y 
N9A C4A NAP sing 279 n y 
C8A N7A NAP doub 280 n y 
C8A H8A NAP sing 281 n n 
N7A C5A NAP sing 282 n y 
C5A C6A NAP sing 283 n y 
C5A C4A NAP doub 284 n y 
C6A N6A NAP sing 285 n n 
C6A N1A NAP doub 286 n y 
N6A H61A NAP sing 287 n n 
N6A H62A NAP sing 288 n n 
N1A C2A NAP sing 289 n y 
C2A N3A NAP doub 290 n y 
C2A H2A NAP sing 291 n n 
N3A C4A NAP sing 292 n y 
O3 PN NAP sing 293 n n 
PN O1N NAP doub 294 n n 
PN O2N NAP sing 295 n n 
PN O5D NAP sing 296 n n 
O5D C5D NAP sing 297 n n 
C5D C4D NAP sing 298 n n 
C5D H51N NAP sing 299 n n 
C5D H52N NAP sing 300 n n 
C4D O4D NAP sing 301 n n 
C4D C3D NAP sing 302 n n 
C4D H4D NAP sing 303 n n 
O4D C1D NAP sing 304 n n 
C3D O3D NAP sing 305 n n 
C3D C2D NAP sing 306 n n 
C3D H3D NAP sing 307 n n 
O3D HO3N NAP sing 308 n n 
C2D O2D NAP sing 309 n n 
C2D C1D NAP sing 310 n n 
C2D H2D NAP sing 311 n n 
O2D HO2N NAP sing 312 n n 
C1D N1N NAP sing 313 n n 
C1D H1D NAP sing 314 n n 
N1N C2N NAP sing 315 n y 
N1N C6N NAP doub 316 n y 
C2N C3N NAP doub 317 n y 
C2N H2N NAP sing 318 n n 
C3N C7N NAP sing 319 n n 
C3N C4N NAP sing 320 n y 
C7N O7N NAP doub 321 n n 
C7N N7N NAP sing 322 n n 
N7N H71N NAP sing 323 n n 
N7N H72N NAP sing 324 n n 
C4N C5N NAP doub 325 n y 
C4N H4N NAP sing 326 n n 
C5N C6N NAP sing 327 n y 
C5N H5N NAP sing 328 n n 
C6N H6N NAP sing 329 n n 
P2B O1X NAP doub 330 n n 
P2B O2X NAP sing 331 n n 
P2B O3X NAP sing 332 n n 
O2X HOP2 NAP sing 333 n n 
O3X HOP3 NAP sing 334 n n 
#
_atom_sites.entry_id                     3MAS 
_atom_sites.fract_transf_matrix[1][1]    0.012028 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012028 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003241 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAP A 1 423 1 NAP NAP . 
D 4 ICT A 1 424 1 ICT ICT . 
E 3 NAP B 1 415 2 NAP NAP . 
F 4 ICT B 1 416 2 ICT ICT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . E 3 45.678 -17.621 -15.846 1 84.9 ? PA NAP 415 B 1 
HETATM 2 O O1A NAP . . . E 3 44.962 -16.496 -15.312 1 82.47 ? O1A NAP 415 B 1 
HETATM 3 O O2A NAP . . . E 3 45.529 -17.937 -17.247 1 80.71 ? O2A NAP 415 B 1 
HETATM 4 O O5B NAP . . . E 3 45.403 -18.842 -15.006 1 84.39 ? O5B NAP 415 B 1 
HETATM 5 C C5B NAP . . . E 3 46.439 -19.284 -14.192 1 85.71 ? C5B NAP 415 B 1 
HETATM 6 C C4B NAP . . . E 3 46.004 -20.46 -13.372 1 84.93 ? C4B NAP 415 B 1 
HETATM 7 O O4B NAP . . . E 3 44.65 -20.491 -13.566 1 85.88 ? O4B NAP 415 B 1 
HETATM 8 C C3B NAP . . . E 3 46.509 -21.65 -14.122 1 84.36 ? C3B NAP 415 B 1 
HETATM 9 O O3B NAP . . . E 3 47.664 -22.094 -13.476 1 86.02 ? O3B NAP 415 B 1 
HETATM 10 C C2B NAP . . . E 3 45.492 -22.67 -13.79 1 85.35 ? C2B NAP 415 B 1 
HETATM 11 O O2B NAP . . . E 3 45.856 -23.181 -12.528 1 87.58 ? O2B NAP 415 B 1 
HETATM 12 C C1B NAP . . . E 3 44.254 -21.834 -13.655 1 84.8 ? C1B NAP 415 B 1 
HETATM 13 N N9A NAP . . . E 3 43.46 -21.882 -14.872 1 83.08 ? N9A NAP 415 B 1 
HETATM 14 C C8A NAP . . . E 3 42.923 -20.846 -15.494 1 82.69 ? C8A NAP 415 B 1 
HETATM 15 N N7A NAP . . . E 3 42.249 -21.269 -16.551 1 80.38 ? N7A NAP 415 B 1 
HETATM 16 C C5A NAP . . . E 3 42.344 -22.582 -16.599 1 80.01 ? C5A NAP 415 B 1 
HETATM 17 C C6A NAP . . . E 3 41.861 -23.558 -17.446 1 79.92 ? C6A NAP 415 B 1 
HETATM 18 N N6A NAP . . . E 3 41.125 -23.288 -18.497 1 81.99 ? N6A NAP 415 B 1 
HETATM 19 N N1A NAP . . . E 3 42.155 -24.818 -17.211 1 79.38 ? N1A NAP 415 B 1 
HETATM 20 C C2A NAP . . . E 3 42.891 -25.142 -16.177 1 81.06 ? C2A NAP 415 B 1 
HETATM 21 N N3A NAP . . . E 3 43.365 -24.247 -15.344 1 80.81 ? N3A NAP 415 B 1 
HETATM 22 C C4A NAP . . . E 3 43.11 -22.963 -15.53 1 80.94 ? C4A NAP 415 B 1 
HETATM 23 O O3 NAP . . . E 3 47.132 -17.435 -15.532 1 82.24 ? O3 NAP 415 B 1 
HETATM 24 P PN NAP . . . E 3 47.661 -16.026 -15.455 1 82.55 ? PN NAP 415 B 1 
HETATM 25 O O1N NAP . . . E 3 46.758 -15.213 -14.677 1 81.74 ? O1N NAP 415 B 1 
HETATM 26 O O2N NAP . . . E 3 49.051 -16.095 -15.069 1 83.29 ? O2N NAP 415 B 1 
HETATM 27 O O5D NAP . . . E 3 47.574 -15.566 -16.904 1 81.75 ? O5D NAP 415 B 1 
HETATM 28 C C5D NAP . . . E 3 48.738 -15.494 -17.669 1 82.27 ? C5D NAP 415 B 1 
HETATM 29 C C4D NAP . . . E 3 48.561 -14.502 -18.779 1 79.09 ? C4D NAP 415 B 1 
HETATM 30 O O4D NAP . . . E 3 47.193 -14.287 -18.776 1 77.76 ? O4D NAP 415 B 1 
HETATM 31 C C3D NAP . . . E 3 49.118 -13.163 -18.352 1 79.7 ? C3D NAP 415 B 1 
HETATM 32 O O3D NAP . . . E 3 50.046 -12.751 -19.323 1 78.56 ? O3D NAP 415 B 1 
HETATM 33 C C2D NAP . . . E 3 47.949 -12.228 -18.461 1 79.85 ? C2D NAP 415 B 1 
HETATM 34 O O2D NAP . . . E 3 48.384 -11.118 -19.198 1 78.41 ? O2D NAP 415 B 1 
HETATM 35 C C1D NAP . . . E 3 47.054 -13.024 -19.339 1 79.13 ? C1D NAP 415 B 1 
HETATM 36 N N1N NAP . . . E 3 45.669 -12.698 -19.074 1 79.45 ? N1N NAP 415 B 1 
HETATM 37 C C2N NAP . . . E 3 44.794 -12.47 -20.11 1 79.67 ? C2N NAP 415 B 1 
HETATM 38 C C3N NAP . . . E 3 43.474 -12.172 -19.835 1 81.54 ? C3N NAP 415 B 1 
HETATM 39 C C7N NAP . . . E 3 42.5 -11.916 -20.963 1 81.01 ? C7N NAP 415 B 1 
HETATM 40 O O7N NAP . . . E 3 41.457 -12.542 -21.027 1 83.89 ? O7N NAP 415 B 1 
HETATM 41 N N7N NAP . . . E 3 42.859 -11.003 -21.836 1 77.69 ? N7N NAP 415 B 1 
HETATM 42 C C4N NAP . . . E 3 43.032 -12.114 -18.528 1 81.8 ? C4N NAP 415 B 1 
HETATM 43 C C5N NAP . . . E 3 43.907 -12.351 -17.49 1 80.57 ? C5N NAP 415 B 1 
HETATM 44 C C6N NAP . . . E 3 45.223 -12.644 -17.779 1 80.83 ? C6N NAP 415 B 1 
HETATM 45 P P2B NAP . . . E 3 46.899 -24.346 -12.428 1 87.56 ? P2B NAP 415 B 1 
HETATM 46 O O1X NAP . . . E 3 46.48 -25.145 -11.191 1 87.76 ? O1X NAP 415 B 1 
HETATM 47 O O2X NAP . . . E 3 47.049 -25.201 -13.581 1 85.36 ? O2X NAP 415 B 1 
HETATM 48 O O3X NAP . . . E 3 48.199 -23.682 -11.906 1 85.34 ? O3X NAP 415 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#