data_3MAS # _model_server_result.job_id NL0KKZSKCUAPA7PotP2aPg _model_server_result.datetime_utc '2024-11-24 20:04:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mas # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":415}' # _entry.id 3MAS # _exptl.entry_id 3MAS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MAS _cell.length_a 83.136 _cell.length_b 83.136 _cell.length_c 308.508 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MAS _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 255 n n PA O2A NAP sing 256 n n PA O5B NAP sing 257 n n PA O3 NAP sing 258 n n O2A HOA2 NAP sing 259 n n O5B C5B NAP sing 260 n n C5B C4B NAP sing 261 n n C5B H51A NAP sing 262 n n C5B H52A NAP sing 263 n n C4B O4B NAP sing 264 n n C4B C3B NAP sing 265 n n C4B H4B NAP sing 266 n n O4B C1B NAP sing 267 n n C3B O3B NAP sing 268 n n C3B C2B NAP sing 269 n n C3B H3B NAP sing 270 n n O3B HO3A NAP sing 271 n n C2B O2B NAP sing 272 n n C2B C1B NAP sing 273 n n C2B H2B NAP sing 274 n n O2B P2B NAP sing 275 n n C1B N9A NAP sing 276 n n C1B H1B NAP sing 277 n n N9A C8A NAP sing 278 n y N9A C4A NAP sing 279 n y C8A N7A NAP doub 280 n y C8A H8A NAP sing 281 n n N7A C5A NAP sing 282 n y C5A C6A NAP sing 283 n y C5A C4A NAP doub 284 n y C6A N6A NAP sing 285 n n C6A N1A NAP doub 286 n y N6A H61A NAP sing 287 n n N6A H62A NAP sing 288 n n N1A C2A NAP sing 289 n y C2A N3A NAP doub 290 n y C2A H2A NAP sing 291 n n N3A C4A NAP sing 292 n y O3 PN NAP sing 293 n n PN O1N NAP doub 294 n n PN O2N NAP sing 295 n n PN O5D NAP sing 296 n n O5D C5D NAP sing 297 n n C5D C4D NAP sing 298 n n C5D H51N NAP sing 299 n n C5D H52N NAP sing 300 n n C4D O4D NAP sing 301 n n C4D C3D NAP sing 302 n n C4D H4D NAP sing 303 n n O4D C1D NAP sing 304 n n C3D O3D NAP sing 305 n n C3D C2D NAP sing 306 n n C3D H3D NAP sing 307 n n O3D HO3N NAP sing 308 n n C2D O2D NAP sing 309 n n C2D C1D NAP sing 310 n n C2D H2D NAP sing 311 n n O2D HO2N NAP sing 312 n n C1D N1N NAP sing 313 n n C1D H1D NAP sing 314 n n N1N C2N NAP sing 315 n y N1N C6N NAP doub 316 n y C2N C3N NAP doub 317 n y C2N H2N NAP sing 318 n n C3N C7N NAP sing 319 n n C3N C4N NAP sing 320 n y C7N O7N NAP doub 321 n n C7N N7N NAP sing 322 n n N7N H71N NAP sing 323 n n N7N H72N NAP sing 324 n n C4N C5N NAP doub 325 n y C4N H4N NAP sing 326 n n C5N C6N NAP sing 327 n y C5N H5N NAP sing 328 n n C6N H6N NAP sing 329 n n P2B O1X NAP doub 330 n n P2B O2X NAP sing 331 n n P2B O3X NAP sing 332 n n O2X HOP2 NAP sing 333 n n O3X HOP3 NAP sing 334 n n # _atom_sites.entry_id 3MAS _atom_sites.fract_transf_matrix[1][1] 0.012028 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012028 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAP A 1 423 1 NAP NAP . D 4 ICT A 1 424 1 ICT ICT . E 3 NAP B 1 415 2 NAP NAP . F 4 ICT B 1 416 2 ICT ICT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . E 3 45.678 -17.621 -15.846 1 84.9 ? PA NAP 415 B 1 HETATM 2 O O1A NAP . . . E 3 44.962 -16.496 -15.312 1 82.47 ? O1A NAP 415 B 1 HETATM 3 O O2A NAP . . . E 3 45.529 -17.937 -17.247 1 80.71 ? O2A NAP 415 B 1 HETATM 4 O O5B NAP . . . E 3 45.403 -18.842 -15.006 1 84.39 ? O5B NAP 415 B 1 HETATM 5 C C5B NAP . . . E 3 46.439 -19.284 -14.192 1 85.71 ? C5B NAP 415 B 1 HETATM 6 C C4B NAP . . . E 3 46.004 -20.46 -13.372 1 84.93 ? C4B NAP 415 B 1 HETATM 7 O O4B NAP . . . E 3 44.65 -20.491 -13.566 1 85.88 ? O4B NAP 415 B 1 HETATM 8 C C3B NAP . . . E 3 46.509 -21.65 -14.122 1 84.36 ? C3B NAP 415 B 1 HETATM 9 O O3B NAP . . . E 3 47.664 -22.094 -13.476 1 86.02 ? O3B NAP 415 B 1 HETATM 10 C C2B NAP . . . E 3 45.492 -22.67 -13.79 1 85.35 ? C2B NAP 415 B 1 HETATM 11 O O2B NAP . . . E 3 45.856 -23.181 -12.528 1 87.58 ? O2B NAP 415 B 1 HETATM 12 C C1B NAP . . . E 3 44.254 -21.834 -13.655 1 84.8 ? C1B NAP 415 B 1 HETATM 13 N N9A NAP . . . E 3 43.46 -21.882 -14.872 1 83.08 ? N9A NAP 415 B 1 HETATM 14 C C8A NAP . . . E 3 42.923 -20.846 -15.494 1 82.69 ? C8A NAP 415 B 1 HETATM 15 N N7A NAP . . . E 3 42.249 -21.269 -16.551 1 80.38 ? N7A NAP 415 B 1 HETATM 16 C C5A NAP . . . E 3 42.344 -22.582 -16.599 1 80.01 ? C5A NAP 415 B 1 HETATM 17 C C6A NAP . . . E 3 41.861 -23.558 -17.446 1 79.92 ? C6A NAP 415 B 1 HETATM 18 N N6A NAP . . . E 3 41.125 -23.288 -18.497 1 81.99 ? N6A NAP 415 B 1 HETATM 19 N N1A NAP . . . E 3 42.155 -24.818 -17.211 1 79.38 ? N1A NAP 415 B 1 HETATM 20 C C2A NAP . . . E 3 42.891 -25.142 -16.177 1 81.06 ? C2A NAP 415 B 1 HETATM 21 N N3A NAP . . . E 3 43.365 -24.247 -15.344 1 80.81 ? N3A NAP 415 B 1 HETATM 22 C C4A NAP . . . E 3 43.11 -22.963 -15.53 1 80.94 ? C4A NAP 415 B 1 HETATM 23 O O3 NAP . . . E 3 47.132 -17.435 -15.532 1 82.24 ? O3 NAP 415 B 1 HETATM 24 P PN NAP . . . E 3 47.661 -16.026 -15.455 1 82.55 ? PN NAP 415 B 1 HETATM 25 O O1N NAP . . . E 3 46.758 -15.213 -14.677 1 81.74 ? O1N NAP 415 B 1 HETATM 26 O O2N NAP . . . E 3 49.051 -16.095 -15.069 1 83.29 ? O2N NAP 415 B 1 HETATM 27 O O5D NAP . . . E 3 47.574 -15.566 -16.904 1 81.75 ? O5D NAP 415 B 1 HETATM 28 C C5D NAP . . . E 3 48.738 -15.494 -17.669 1 82.27 ? C5D NAP 415 B 1 HETATM 29 C C4D NAP . . . E 3 48.561 -14.502 -18.779 1 79.09 ? C4D NAP 415 B 1 HETATM 30 O O4D NAP . . . E 3 47.193 -14.287 -18.776 1 77.76 ? O4D NAP 415 B 1 HETATM 31 C C3D NAP . . . E 3 49.118 -13.163 -18.352 1 79.7 ? C3D NAP 415 B 1 HETATM 32 O O3D NAP . . . E 3 50.046 -12.751 -19.323 1 78.56 ? O3D NAP 415 B 1 HETATM 33 C C2D NAP . . . E 3 47.949 -12.228 -18.461 1 79.85 ? C2D NAP 415 B 1 HETATM 34 O O2D NAP . . . E 3 48.384 -11.118 -19.198 1 78.41 ? O2D NAP 415 B 1 HETATM 35 C C1D NAP . . . E 3 47.054 -13.024 -19.339 1 79.13 ? C1D NAP 415 B 1 HETATM 36 N N1N NAP . . . E 3 45.669 -12.698 -19.074 1 79.45 ? N1N NAP 415 B 1 HETATM 37 C C2N NAP . . . E 3 44.794 -12.47 -20.11 1 79.67 ? C2N NAP 415 B 1 HETATM 38 C C3N NAP . . . E 3 43.474 -12.172 -19.835 1 81.54 ? C3N NAP 415 B 1 HETATM 39 C C7N NAP . . . E 3 42.5 -11.916 -20.963 1 81.01 ? C7N NAP 415 B 1 HETATM 40 O O7N NAP . . . E 3 41.457 -12.542 -21.027 1 83.89 ? O7N NAP 415 B 1 HETATM 41 N N7N NAP . . . E 3 42.859 -11.003 -21.836 1 77.69 ? N7N NAP 415 B 1 HETATM 42 C C4N NAP . . . E 3 43.032 -12.114 -18.528 1 81.8 ? C4N NAP 415 B 1 HETATM 43 C C5N NAP . . . E 3 43.907 -12.351 -17.49 1 80.57 ? C5N NAP 415 B 1 HETATM 44 C C6N NAP . . . E 3 45.223 -12.644 -17.779 1 80.83 ? C6N NAP 415 B 1 HETATM 45 P P2B NAP . . . E 3 46.899 -24.346 -12.428 1 87.56 ? P2B NAP 415 B 1 HETATM 46 O O1X NAP . . . E 3 46.48 -25.145 -11.191 1 87.76 ? O1X NAP 415 B 1 HETATM 47 O O2X NAP . . . E 3 47.049 -25.201 -13.581 1 85.36 ? O2X NAP 415 B 1 HETATM 48 O O3X NAP . . . E 3 48.199 -23.682 -11.906 1 85.34 ? O3X NAP 415 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #