data_3MB6 # _model_server_result.job_id Y_OGUd8jhKWL54JWcMv9bg _model_server_result.datetime_utc '2025-07-31 14:27:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mb6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":332}' # _entry.id 3MB6 # _exptl.entry_id 3MB6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 296.231 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "naphtho[2,1-b:7,6-b']difuran-2,8-dicarboxylic acid" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.65 _cell.angle_gamma 90 _cell.entry_id 3MB6 _cell.length_a 58.776 _cell.length_b 45.787 _cell.length_c 63.673 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MB6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H8 O6' _chem_comp.formula_weight 296.231 _chem_comp.id 01I _chem_comp.mon_nstd_flag . _chem_comp.name "naphtho[2,1-b:7,6-b']difuran-2,8-dicarboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAB CAA 01I doub 1 n y CAA CAF 01I sing 2 n y CAA HAA 01I sing 3 n n CAK CAB 01I sing 4 n y CAC CAB 01I sing 5 n y OAM CAC 01I sing 6 n y CAC CAD 01I doub 7 n y CAD CAE 01I sing 8 n y CAD HAD 01I sing 9 n n CAE CAG 01I doub 10 n y CAE CAF 01I sing 11 n y CAF CAJ 01I doub 12 n y CAN CAG 01I sing 13 n y CAG CAH 01I sing 14 n y CAH OAP 01I sing 15 n y CAH CAI 01I doub 16 n y CAJ CAI 01I sing 17 n y CAI HAI 01I sing 18 n n CAJ HAJ 01I sing 19 n n CAL CAK 01I doub 20 n y CAK HAK 01I sing 21 n n CAR CAL 01I sing 22 n n CAL OAM 01I sing 23 n y CAN CAO 01I doub 24 n y CAN HAN 01I sing 25 n n CAO CAQ 01I sing 26 n n CAO OAP 01I sing 27 n y OAU CAQ 01I doub 28 n n CAQ OAT 01I sing 29 n n OAS CAR 01I doub 30 n n OAV CAR 01I sing 31 n n OAT HOAT 01I sing 32 n n OAV HOAV 01I sing 33 n n # _atom_sites.entry_id 3MB6 _atom_sites.fract_transf_matrix[1][1] 0.017014 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006754 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02184 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016897 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 01I A 1 332 1 01I 01I . C 3 SO4 A 1 333 1 SO4 SO4 . D 4 HOH A 1 334 1 HOH HOH . D 4 HOH A 2 335 2 HOH HOH . D 4 HOH A 3 336 3 HOH HOH . D 4 HOH A 4 337 4 HOH HOH . D 4 HOH A 5 338 5 HOH HOH . D 4 HOH A 6 339 6 HOH HOH . D 4 HOH A 7 340 7 HOH HOH . D 4 HOH A 8 341 8 HOH HOH . D 4 HOH A 9 342 9 HOH HOH . D 4 HOH A 10 343 10 HOH HOH . D 4 HOH A 11 344 11 HOH HOH . D 4 HOH A 12 345 12 HOH HOH . D 4 HOH A 13 346 13 HOH HOH . D 4 HOH A 14 347 14 HOH HOH . D 4 HOH A 15 348 15 HOH HOH . D 4 HOH A 16 349 16 HOH HOH . D 4 HOH A 17 350 17 HOH HOH . D 4 HOH A 18 351 18 HOH HOH . D 4 HOH A 19 352 19 HOH HOH . D 4 HOH A 20 353 20 HOH HOH . D 4 HOH A 21 354 21 HOH HOH . D 4 HOH A 22 355 22 HOH HOH . D 4 HOH A 23 356 23 HOH HOH . D 4 HOH A 24 357 24 HOH HOH . D 4 HOH A 25 358 25 HOH HOH . D 4 HOH A 26 359 26 HOH HOH . D 4 HOH A 27 360 27 HOH HOH . D 4 HOH A 28 361 28 HOH HOH . D 4 HOH A 29 362 29 HOH HOH . D 4 HOH A 30 363 30 HOH HOH . D 4 HOH A 31 364 31 HOH HOH . D 4 HOH A 32 365 32 HOH HOH . D 4 HOH A 33 366 33 HOH HOH . D 4 HOH A 34 367 34 HOH HOH . D 4 HOH A 35 368 35 HOH HOH . D 4 HOH A 36 369 36 HOH HOH . D 4 HOH A 37 370 37 HOH HOH . D 4 HOH A 38 371 38 HOH HOH . D 4 HOH A 39 372 39 HOH HOH . D 4 HOH A 40 373 40 HOH HOH . D 4 HOH A 41 374 41 HOH HOH . D 4 HOH A 42 375 42 HOH HOH . D 4 HOH A 43 376 43 HOH HOH . D 4 HOH A 44 377 44 HOH HOH . D 4 HOH A 45 378 45 HOH HOH . D 4 HOH A 46 379 46 HOH HOH . D 4 HOH A 47 380 47 HOH HOH . D 4 HOH A 48 381 48 HOH HOH . D 4 HOH A 49 382 49 HOH HOH . D 4 HOH A 50 383 50 HOH HOH . D 4 HOH A 51 384 51 HOH HOH . D 4 HOH A 52 385 52 HOH HOH . D 4 HOH A 53 386 53 HOH HOH . D 4 HOH A 54 387 54 HOH HOH . D 4 HOH A 55 388 55 HOH HOH . D 4 HOH A 56 389 56 HOH HOH . D 4 HOH A 57 390 57 HOH HOH . D 4 HOH A 58 391 58 HOH HOH . D 4 HOH A 59 392 59 HOH HOH . D 4 HOH A 60 393 60 HOH HOH . D 4 HOH A 61 394 61 HOH HOH . D 4 HOH A 62 395 62 HOH HOH . D 4 HOH A 63 396 63 HOH HOH . D 4 HOH A 64 397 64 HOH HOH . D 4 HOH A 65 398 65 HOH HOH . D 4 HOH A 66 399 66 HOH HOH . D 4 HOH A 67 400 67 HOH HOH . D 4 HOH A 68 401 68 HOH HOH . D 4 HOH A 69 402 69 HOH HOH . D 4 HOH A 70 403 70 HOH HOH . D 4 HOH A 71 404 71 HOH HOH . D 4 HOH A 72 405 72 HOH HOH . D 4 HOH A 73 406 73 HOH HOH . D 4 HOH A 74 407 74 HOH HOH . D 4 HOH A 75 408 75 HOH HOH . D 4 HOH A 76 409 76 HOH HOH . D 4 HOH A 77 410 77 HOH HOH . D 4 HOH A 78 411 78 HOH HOH . D 4 HOH A 79 412 79 HOH HOH . D 4 HOH A 80 413 80 HOH HOH . D 4 HOH A 81 414 81 HOH HOH . D 4 HOH A 82 415 82 HOH HOH . D 4 HOH A 83 416 83 HOH HOH . D 4 HOH A 84 417 84 HOH HOH . D 4 HOH A 85 418 85 HOH HOH . D 4 HOH A 86 419 86 HOH HOH . D 4 HOH A 87 420 87 HOH HOH . D 4 HOH A 88 421 88 HOH HOH . D 4 HOH A 89 422 89 HOH HOH . D 4 HOH A 90 423 90 HOH HOH . D 4 HOH A 91 424 91 HOH HOH . D 4 HOH A 92 425 92 HOH HOH . D 4 HOH A 93 426 93 HOH HOH . D 4 HOH A 94 427 94 HOH HOH . D 4 HOH A 95 428 95 HOH HOH . D 4 HOH A 96 429 96 HOH HOH . D 4 HOH A 97 430 97 HOH HOH . D 4 HOH A 98 431 98 HOH HOH . D 4 HOH A 99 432 99 HOH HOH . D 4 HOH A 100 433 100 HOH HOH . D 4 HOH A 101 434 101 HOH HOH . D 4 HOH A 102 435 102 HOH HOH . D 4 HOH A 103 436 103 HOH HOH . D 4 HOH A 104 437 104 HOH HOH . D 4 HOH A 105 438 105 HOH HOH . D 4 HOH A 106 439 106 HOH HOH . D 4 HOH A 107 440 107 HOH HOH . D 4 HOH A 108 441 108 HOH HOH . D 4 HOH A 109 442 109 HOH HOH . D 4 HOH A 110 443 110 HOH HOH . D 4 HOH A 111 444 111 HOH HOH . D 4 HOH A 112 445 112 HOH HOH . D 4 HOH A 113 446 113 HOH HOH . D 4 HOH A 114 447 114 HOH HOH . D 4 HOH A 115 448 115 HOH HOH . D 4 HOH A 116 449 116 HOH HOH . D 4 HOH A 117 450 117 HOH HOH . D 4 HOH A 118 451 118 HOH HOH . D 4 HOH A 119 452 119 HOH HOH . D 4 HOH A 120 453 120 HOH HOH . D 4 HOH A 121 454 121 HOH HOH . D 4 HOH A 122 455 122 HOH HOH . D 4 HOH A 123 456 123 HOH HOH . D 4 HOH A 124 457 124 HOH HOH . D 4 HOH A 125 458 125 HOH HOH . D 4 HOH A 126 459 126 HOH HOH . D 4 HOH A 127 460 127 HOH HOH . D 4 HOH A 128 461 128 HOH HOH . D 4 HOH A 129 462 129 HOH HOH . D 4 HOH A 130 463 130 HOH HOH . D 4 HOH A 131 464 131 HOH HOH . D 4 HOH A 132 465 132 HOH HOH . D 4 HOH A 133 466 133 HOH HOH . D 4 HOH A 134 467 134 HOH HOH . D 4 HOH A 135 468 135 HOH HOH . D 4 HOH A 136 469 136 HOH HOH . D 4 HOH A 137 470 137 HOH HOH . D 4 HOH A 138 471 138 HOH HOH . D 4 HOH A 139 472 139 HOH HOH . D 4 HOH A 140 473 140 HOH HOH . D 4 HOH A 141 474 141 HOH HOH . D 4 HOH A 142 475 142 HOH HOH . D 4 HOH A 143 476 143 HOH HOH . D 4 HOH A 144 477 144 HOH HOH . D 4 HOH A 145 478 145 HOH HOH . D 4 HOH A 146 479 146 HOH HOH . D 4 HOH A 147 480 147 HOH HOH . D 4 HOH A 148 481 148 HOH HOH . D 4 HOH A 149 482 149 HOH HOH . D 4 HOH A 150 483 150 HOH HOH . D 4 HOH A 151 484 151 HOH HOH . D 4 HOH A 152 485 152 HOH HOH . D 4 HOH A 153 486 153 HOH HOH . D 4 HOH A 154 487 154 HOH HOH . D 4 HOH A 155 488 155 HOH HOH . D 4 HOH A 156 489 156 HOH HOH . D 4 HOH A 157 490 157 HOH HOH . D 4 HOH A 158 491 158 HOH HOH . D 4 HOH A 159 492 159 HOH HOH . D 4 HOH A 160 493 160 HOH HOH . D 4 HOH A 161 494 161 HOH HOH . D 4 HOH A 162 495 162 HOH HOH . D 4 HOH A 163 496 163 HOH HOH . D 4 HOH A 164 497 164 HOH HOH . D 4 HOH A 165 498 165 HOH HOH . D 4 HOH A 166 499 166 HOH HOH . D 4 HOH A 167 500 167 HOH HOH . D 4 HOH A 168 501 168 HOH HOH . D 4 HOH A 169 502 169 HOH HOH . D 4 HOH A 170 503 170 HOH HOH . D 4 HOH A 171 504 171 HOH HOH . D 4 HOH A 172 505 172 HOH HOH . D 4 HOH A 173 506 173 HOH HOH . D 4 HOH A 174 507 174 HOH HOH . D 4 HOH A 175 508 175 HOH HOH . D 4 HOH A 176 509 176 HOH HOH . D 4 HOH A 177 510 177 HOH HOH . D 4 HOH A 178 511 178 HOH HOH . D 4 HOH A 179 512 179 HOH HOH . D 4 HOH A 180 513 180 HOH HOH . D 4 HOH A 181 514 181 HOH HOH . D 4 HOH A 182 515 182 HOH HOH . D 4 HOH A 183 516 183 HOH HOH . D 4 HOH A 184 517 184 HOH HOH . D 4 HOH A 185 518 185 HOH HOH . D 4 HOH A 186 519 186 HOH HOH . D 4 HOH A 187 520 187 HOH HOH . D 4 HOH A 188 521 188 HOH HOH . D 4 HOH A 189 522 189 HOH HOH . D 4 HOH A 190 523 190 HOH HOH . D 4 HOH A 191 524 191 HOH HOH . D 4 HOH A 192 525 192 HOH HOH . D 4 HOH A 193 526 193 HOH HOH . D 4 HOH A 194 527 194 HOH HOH . D 4 HOH A 195 528 195 HOH HOH . D 4 HOH A 196 529 196 HOH HOH . D 4 HOH A 197 530 197 HOH HOH . D 4 HOH A 198 531 198 HOH HOH . D 4 HOH A 199 532 199 HOH HOH . D 4 HOH A 200 533 200 HOH HOH . D 4 HOH A 201 534 201 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 01I . . . B 2 23.249 9.923 12.236 1 46.69 ? CAA 01I 332 A 1 HETATM 2 C CAB 01I . . . B 2 23.176 10.598 13.443 1 47.55 ? CAB 01I 332 A 1 HETATM 3 C CAC 01I . . . B 2 22.999 9.907 14.729 1 47.44 ? CAC 01I 332 A 1 HETATM 4 C CAD 01I . . . B 2 22.889 8.519 14.829 1 46.38 ? CAD 01I 332 A 1 HETATM 5 C CAE 01I . . . B 2 22.957 7.813 13.619 1 44.85 ? CAE 01I 332 A 1 HETATM 6 C CAF 01I . . . B 2 23.137 8.532 12.297 1 45.43 ? CAF 01I 332 A 1 HETATM 7 C CAG 01I . . . B 2 22.866 6.424 13.54 1 44.01 ? CAG 01I 332 A 1 HETATM 8 C CAH 01I . . . B 2 22.941 5.762 12.224 1 43.44 ? CAH 01I 332 A 1 HETATM 9 C CAI 01I . . . B 2 23.11 6.444 11.031 1 43.83 ? CAI 01I 332 A 1 HETATM 10 C CAJ 01I . . . B 2 23.206 7.833 11.086 1 45.27 ? CAJ 01I 332 A 1 HETATM 11 C CAK 01I . . . B 2 23.253 12.007 13.701 1 48.07 ? CAK 01I 332 A 1 HETATM 12 C CAL 01I . . . B 2 23.124 12.133 15.091 1 48.98 ? CAL 01I 332 A 1 HETATM 13 O OAM 01I . . . B 2 22.971 10.916 15.742 1 49.12 ? OAM 01I 332 A 1 HETATM 14 C CAN 01I . . . B 2 22.694 5.387 14.528 1 42.71 ? CAN 01I 332 A 1 HETATM 15 C CAO 01I . . . B 2 22.673 4.185 13.791 1 41.76 ? CAO 01I 332 A 1 HETATM 16 O OAP 01I . . . B 2 22.825 4.36 12.429 1 43.22 ? OAP 01I 332 A 1 HETATM 17 C CAQ 01I . . . B 2 22.514 2.807 14.341 1 40.3 ? CAQ 01I 332 A 1 HETATM 18 C CAR 01I . . . B 2 23.151 13.452 15.802 1 49.54 ? CAR 01I 332 A 1 HETATM 19 O OAS 01I . . . B 2 23.026 13.463 17.049 1 50.37 ? OAS 01I 332 A 1 HETATM 20 O OAT 01I . . . B 2 22.382 2.627 15.573 1 39.45 ? OAT 01I 332 A 1 HETATM 21 O OAU 01I . . . B 2 22.512 1.875 13.512 1 37.36 ? OAU 01I 332 A 1 HETATM 22 O OAV 01I . . . B 2 23.293 14.502 15.13 1 49.32 ? OAV 01I 332 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #