data_3MBF # _model_server_result.job_id 0IGOVg-62DCmtRNnEHx1GQ _model_server_result.datetime_utc '2024-11-26 16:30:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mbf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":345}' # _entry.id 3MBF # _exptl.entry_id 3MBF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.116 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '1,6-FRUCTOSE DIPHOSPHATE (LINEAR FORM)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MBF _cell.length_a 121.46 _cell.length_b 135.82 _cell.length_c 61.54 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MBF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -30.77 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 225 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 221 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C2 _struct_conn.ptnr2_label_comp_id 2FP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 2FP _struct_conn.ptnr2_auth_seq_id 345 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.684 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H14 O12 P2' _chem_comp.formula_weight 340.116 _chem_comp.id 2FP _chem_comp.mon_nstd_flag . _chem_comp.name '1,6-FRUCTOSE DIPHOSPHATE (LINEAR FORM)' _chem_comp.type saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P6 O6 2FP sing 1 n n P6 O61 2FP sing 2 n n P6 O62 2FP sing 3 n n P6 O63 2FP doub 4 n n O6 C6 2FP sing 5 n n C6 C5 2FP sing 6 n n C6 H61 2FP sing 7 n n C6 H62 2FP sing 8 n n C5 O5 2FP sing 9 n n C5 C4 2FP sing 10 n n C5 H5 2FP sing 11 n n O5 HO5 2FP sing 12 n n C4 O4 2FP sing 13 n n C4 C3 2FP sing 14 n n C4 H4 2FP sing 15 n n O4 HO4 2FP sing 16 n n C3 O3 2FP sing 17 n n C3 C2 2FP sing 18 n n C3 H3 2FP sing 19 n n O3 HO3 2FP sing 20 n n C2 O2 2FP doub 21 n n C2 C1 2FP sing 22 n n C1 O1 2FP sing 23 n n C1 H11 2FP sing 24 n n C1 H12A 2FP sing 25 n n O1 P1 2FP sing 26 n n O61 HO61 2FP sing 27 n n O62 HO62 2FP sing 28 n n P1 O11 2FP doub 29 n n P1 O12 2FP sing 30 n n P1 O13 2FP sing 31 n n O12 H12 2FP sing 32 n n O13 H13 2FP sing 33 n n # _atom_sites.entry_id 3MBF _atom_sites.fract_transf_matrix[1][1] 0.008233 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007363 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2FP A 1 345 345 2FP 2FP . C 3 HOH A 1 339 1 HOH HOH . C 3 HOH A 2 340 2 HOH HOH . C 3 HOH A 3 341 3 HOH HOH . C 3 HOH A 4 342 4 HOH HOH . C 3 HOH A 5 343 5 HOH HOH . C 3 HOH A 6 344 6 HOH HOH . C 3 HOH A 7 346 7 HOH HOH . C 3 HOH A 8 347 8 HOH HOH . C 3 HOH A 9 348 9 HOH HOH . C 3 HOH A 10 349 10 HOH HOH . C 3 HOH A 11 350 11 HOH HOH . C 3 HOH A 12 351 12 HOH HOH . C 3 HOH A 13 352 13 HOH HOH . C 3 HOH A 14 353 14 HOH HOH . C 3 HOH A 15 354 15 HOH HOH . C 3 HOH A 16 355 17 HOH HOH . C 3 HOH A 17 356 18 HOH HOH . C 3 HOH A 18 357 19 HOH HOH . C 3 HOH A 19 358 20 HOH HOH . C 3 HOH A 20 359 21 HOH HOH . C 3 HOH A 21 360 22 HOH HOH . C 3 HOH A 22 361 23 HOH HOH . C 3 HOH A 23 362 24 HOH HOH . C 3 HOH A 24 363 25 HOH HOH . C 3 HOH A 25 364 26 HOH HOH . C 3 HOH A 26 365 27 HOH HOH . C 3 HOH A 27 366 28 HOH HOH . C 3 HOH A 28 367 29 HOH HOH . C 3 HOH A 29 368 30 HOH HOH . C 3 HOH A 30 369 31 HOH HOH . C 3 HOH A 31 370 32 HOH HOH . C 3 HOH A 32 371 33 HOH HOH . C 3 HOH A 33 372 34 HOH HOH . C 3 HOH A 34 373 35 HOH HOH . C 3 HOH A 35 374 36 HOH HOH . C 3 HOH A 36 375 37 HOH HOH . C 3 HOH A 37 376 38 HOH HOH . C 3 HOH A 38 377 39 HOH HOH . C 3 HOH A 39 378 41 HOH HOH . C 3 HOH A 40 379 42 HOH HOH . C 3 HOH A 41 380 43 HOH HOH . C 3 HOH A 42 381 44 HOH HOH . C 3 HOH A 43 382 45 HOH HOH . C 3 HOH A 44 383 46 HOH HOH . C 3 HOH A 45 384 48 HOH HOH . C 3 HOH A 46 385 49 HOH HOH . C 3 HOH A 47 386 50 HOH HOH . C 3 HOH A 48 387 51 HOH HOH . C 3 HOH A 49 388 52 HOH HOH . C 3 HOH A 50 389 53 HOH HOH . C 3 HOH A 51 390 54 HOH HOH . C 3 HOH A 52 391 56 HOH HOH . C 3 HOH A 53 392 57 HOH HOH . C 3 HOH A 54 393 59 HOH HOH . C 3 HOH A 55 394 62 HOH HOH . C 3 HOH A 56 395 63 HOH HOH . C 3 HOH A 57 396 64 HOH HOH . C 3 HOH A 58 397 65 HOH HOH . C 3 HOH A 59 398 66 HOH HOH . C 3 HOH A 60 399 67 HOH HOH . C 3 HOH A 61 400 68 HOH HOH . C 3 HOH A 62 401 69 HOH HOH . C 3 HOH A 63 402 71 HOH HOH . C 3 HOH A 64 403 72 HOH HOH . C 3 HOH A 65 404 73 HOH HOH . C 3 HOH A 66 405 74 HOH HOH . C 3 HOH A 67 406 75 HOH HOH . C 3 HOH A 68 407 76 HOH HOH . C 3 HOH A 69 408 77 HOH HOH . C 3 HOH A 70 409 78 HOH HOH . C 3 HOH A 71 410 79 HOH HOH . C 3 HOH A 72 411 80 HOH HOH . C 3 HOH A 73 412 81 HOH HOH . C 3 HOH A 74 413 82 HOH HOH . C 3 HOH A 75 414 83 HOH HOH . C 3 HOH A 76 415 84 HOH HOH . C 3 HOH A 77 416 85 HOH HOH . C 3 HOH A 78 417 86 HOH HOH . C 3 HOH A 79 418 87 HOH HOH . C 3 HOH A 80 419 88 HOH HOH . C 3 HOH A 81 420 89 HOH HOH . C 3 HOH A 82 421 90 HOH HOH . C 3 HOH A 83 422 91 HOH HOH . C 3 HOH A 84 423 92 HOH HOH . C 3 HOH A 85 424 93 HOH HOH . C 3 HOH A 86 425 94 HOH HOH . C 3 HOH A 87 426 95 HOH HOH . C 3 HOH A 88 427 96 HOH HOH . C 3 HOH A 89 428 97 HOH HOH . C 3 HOH A 90 429 98 HOH HOH . C 3 HOH A 91 430 99 HOH HOH . C 3 HOH A 92 431 100 HOH HOH . C 3 HOH A 93 432 101 HOH HOH . C 3 HOH A 94 433 102 HOH HOH . C 3 HOH A 95 434 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P6 2FP . . . B 2 -23.614 -12.482 -2.728 1 31.35 ? P6 2FP 345 A 1 HETATM 2 O O6 2FP . . . B 2 -23.484 -14.049 -2.96 1 31.37 ? O6 2FP 345 A 1 HETATM 3 C C6 2FP . . . B 2 -22.939 -14.585 -4.151 1 29.27 ? C6 2FP 345 A 1 HETATM 4 C C5 2FP . . . B 2 -22.682 -16.053 -3.855 1 29.01 ? C5 2FP 345 A 1 HETATM 5 O O5 2FP . . . B 2 -23.927 -16.749 -3.69 1 30.44 ? O5 2FP 345 A 1 HETATM 6 C C4 2FP . . . B 2 -21.914 -16.688 -5.006 1 27.99 ? C4 2FP 345 A 1 HETATM 7 O O4 2FP . . . B 2 -20.841 -15.804 -5.425 1 29.44 ? O4 2FP 345 A 1 HETATM 8 C C3 2FP . . . B 2 -21.449 -18.085 -4.593 1 23.23 ? C3 2FP 345 A 1 HETATM 9 O O3 2FP . . . B 2 -20.412 -18.058 -3.622 1 21.22 ? O3 2FP 345 A 1 HETATM 10 C C2 2FP . . . B 2 -20.734 -18.798 -5.683 1 21.34 ? C2 2FP 345 A 1 HETATM 11 C C1 2FP . . . B 2 -21.508 -19.187 -6.936 1 22.72 ? C1 2FP 345 A 1 HETATM 12 O O1 2FP . . . B 2 -22.878 -18.862 -6.917 1 21.51 ? O1 2FP 345 A 1 HETATM 13 O O61 2FP . . . B 2 -24.199 -12.352 -1.38 1 30.21 ? O61 2FP 345 A 1 HETATM 14 O O62 2FP . . . B 2 -22.133 -11.8 -2.803 1 29.43 ? O62 2FP 345 A 1 HETATM 15 O O63 2FP . . . B 2 -24.336 -11.885 -3.923 1 32.77 ? O63 2FP 345 A 1 HETATM 16 P P1 2FP . . . B 2 -23.653 -19.236 -8.292 1 21.76 ? P1 2FP 345 A 1 HETATM 17 O O11 2FP . . . B 2 -25.078 -18.877 -7.936 1 21.32 ? O11 2FP 345 A 1 HETATM 18 O O12 2FP . . . B 2 -23.122 -18.415 -9.558 1 18.52 ? O12 2FP 345 A 1 HETATM 19 O O13 2FP . . . B 2 -23.292 -20.688 -8.62 1 22.68 ? O13 2FP 345 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 19 #