data_3MBV # _model_server_result.job_id Fd25yCuPb9K4srbR3wyojQ _model_server_result.datetime_utc '2025-03-06 03:58:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mbv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":249}' # _entry.id 3MBV # _exptl.entry_id 3MBV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.662 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3R,7R,11R)-3,7,11,15-tetramethylhexadecyl alpha-D-ribopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3MBV _cell.length_a 61.348 _cell.length_b 61.348 _cell.length_c 109.787 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MBV _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 30.674 53.128926 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -30.674 53.128926 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.454 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C25 H50 O5' _chem_comp.formula_weight 430.662 _chem_comp.id BXC _chem_comp.mon_nstd_flag . _chem_comp.name '(3R,7R,11R)-3,7,11,15-tetramethylhexadecyl alpha-D-ribopyranoside' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAB BXC sing 70 n n CAB CAC BXC sing 71 n n CAB CAD BXC sing 72 n n CAD CAE BXC sing 73 n n CAE CAF BXC sing 74 n n CAF CAG BXC sing 75 n n CAG CAH BXC sing 76 n n CAG CAI BXC sing 77 n n CAI CAJ BXC sing 78 n n CAJ CAK BXC sing 79 n n CAK CAL BXC sing 80 n n CAL CAM BXC sing 81 n n CAL CAN BXC sing 82 n n CAN CAO BXC sing 83 n n CAO CAP BXC sing 84 n n CAP CAQ BXC sing 85 n n CAQ CAR BXC sing 86 n n CAQ CAS BXC sing 87 n n CAS CAT BXC sing 88 n n CAT OAU BXC sing 89 n n OAU CAV BXC sing 90 n n CAV OAW BXC sing 91 n n CAV CBC BXC sing 92 n n OAW CAX BXC sing 93 n n CAX CAY BXC sing 94 n n CAY OAZ BXC sing 95 n n CAY CBA BXC sing 96 n n CBA OBB BXC sing 97 n n CBA CBC BXC sing 98 n n CBC OBD BXC sing 99 n n CAA HAA BXC sing 100 n n CAA HAAA BXC sing 101 n n CAA HAAB BXC sing 102 n n CAB HAB BXC sing 103 n n CAC HAC BXC sing 104 n n CAC HACA BXC sing 105 n n CAC HACB BXC sing 106 n n CAD HAD BXC sing 107 n n CAD HADA BXC sing 108 n n CAE HAE BXC sing 109 n n CAE HAEA BXC sing 110 n n CAF HAF BXC sing 111 n n CAF HAFA BXC sing 112 n n CAG HAG BXC sing 113 n n CAH HAH BXC sing 114 n n CAH HAHA BXC sing 115 n n CAH HAHB BXC sing 116 n n CAI HAI BXC sing 117 n n CAI HAIA BXC sing 118 n n CAJ HAJ BXC sing 119 n n CAJ HAJA BXC sing 120 n n CAK HAK BXC sing 121 n n CAK HAKA BXC sing 122 n n CAL HAL BXC sing 123 n n CAM HAM BXC sing 124 n n CAM HAMA BXC sing 125 n n CAM HAMB BXC sing 126 n n CAN HAN BXC sing 127 n n CAN HANA BXC sing 128 n n CAO HAO BXC sing 129 n n CAO HAOA BXC sing 130 n n CAP HAP BXC sing 131 n n CAP HAPA BXC sing 132 n n CAQ HAQ BXC sing 133 n n CAR HAR BXC sing 134 n n CAR HARA BXC sing 135 n n CAR HARB BXC sing 136 n n CAS HAS BXC sing 137 n n CAS HASA BXC sing 138 n n CAT HAT BXC sing 139 n n CAT HATA BXC sing 140 n n CAV HAV BXC sing 141 n n CAX HAX BXC sing 142 n n CAX HAXA BXC sing 143 n n CAY HAY BXC sing 144 n n OAZ HOAZ BXC sing 145 n n CBA HBA BXC sing 146 n n OBB HOBB BXC sing 147 n n CBC HBC BXC sing 148 n n OBD HOBD BXC sing 149 n n # _atom_sites.entry_id 3MBV _atom_sites.fract_transf_matrix[1][1] 0.0163 _atom_sites.fract_transf_matrix[1][2] 0.009411 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018822 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009109 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 BXC A 1 249 1 BXC BXC . D 4 HOH A 1 401 401 HOH HOH . D 4 HOH A 2 402 402 HOH HOH . D 4 HOH A 3 403 403 HOH HOH . D 4 HOH A 4 404 404 HOH HOH . D 4 HOH A 5 405 405 HOH HOH . D 4 HOH A 6 406 406 HOH HOH . D 4 HOH A 7 407 407 HOH HOH . D 4 HOH A 8 411 411 HOH HOH . D 4 HOH A 9 412 412 HOH HOH . D 4 HOH A 10 413 413 HOH HOH . D 4 HOH A 11 414 414 HOH HOH . D 4 HOH A 12 415 415 HOH HOH . D 4 HOH A 13 416 416 HOH HOH . D 4 HOH A 14 418 418 HOH HOH . D 4 HOH A 15 419 419 HOH HOH . D 4 HOH A 16 420 420 HOH HOH . D 4 HOH A 17 501 501 HOH HOH . D 4 HOH A 18 502 502 HOH HOH . D 4 HOH A 19 511 511 HOH HOH . D 4 HOH A 20 512 512 HOH HOH . D 4 HOH A 21 514 514 HOH HOH . D 4 HOH A 22 525 525 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA BXC . . . C 3 24.898 32.286 57.907 1 42.79 ? CAA BXC 249 A 1 HETATM 2 C CAB BXC . . . C 3 24.651 30.816 58.306 1 42.84 ? CAB BXC 249 A 1 HETATM 3 C CAC BXC . . . C 3 23.745 30.717 59.543 1 44.01 ? CAC BXC 249 A 1 HETATM 4 C CAD BXC . . . C 3 24.185 29.954 57.097 1 42.78 ? CAD BXC 249 A 1 HETATM 5 C CAE BXC . . . C 3 22.656 29.681 56.967 1 42.24 ? CAE BXC 249 A 1 HETATM 6 C CAF BXC . . . C 3 22.06 30.262 55.663 1 41.58 ? CAF BXC 249 A 1 HETATM 7 C CAG BXC . . . C 3 21.283 29.26 54.763 1 40.14 ? CAG BXC 249 A 1 HETATM 8 C CAH BXC . . . C 3 21.486 27.795 55.166 1 39.57 ? CAH BXC 249 A 1 HETATM 9 C CAI BXC . . . C 3 19.784 29.614 54.716 1 40.16 ? CAI BXC 249 A 1 HETATM 10 C CAJ BXC . . . C 3 19.48 30.895 53.917 1 39.74 ? CAJ BXC 249 A 1 HETATM 11 C CAK BXC . . . C 3 18.521 30.584 52.744 1 38.73 ? CAK BXC 249 A 1 HETATM 12 C CAL BXC . . . C 3 18.129 31.811 51.897 1 37.27 ? CAL BXC 249 A 1 HETATM 13 C CAM BXC . . . C 3 18.549 33.149 52.514 1 38.54 ? CAM BXC 249 A 1 HETATM 14 C CAN BXC . . . C 3 18.696 31.635 50.494 1 36.64 ? CAN BXC 249 A 1 HETATM 15 C CAO BXC . . . C 3 17.69 30.879 49.615 1 36.92 ? CAO BXC 249 A 1 HETATM 16 C CAP BXC . . . C 3 17.377 31.699 48.374 1 34.66 ? CAP BXC 249 A 1 HETATM 17 C CAQ BXC . . . C 3 16.31 31.048 47.515 1 33.17 ? CAQ BXC 249 A 1 HETATM 18 C CAR BXC . . . C 3 15.235 32.081 47.183 1 33.78 ? CAR BXC 249 A 1 HETATM 19 C CAS BXC . . . C 3 17.011 30.484 46.272 1 32.49 ? CAS BXC 249 A 1 HETATM 20 C CAT BXC . . . C 3 16.116 30.41 45.047 1 31.05 ? CAT BXC 249 A 1 HETATM 21 O OAU BXC . . . C 3 17.116 30.152 44.031 1 30.89 ? OAU BXC 249 A 1 HETATM 22 C CAV BXC . . . C 3 16.569 29.861 42.734 1 30.41 ? CAV BXC 249 A 1 HETATM 23 O OAW BXC . . . C 3 15.799 30.979 42.234 1 27.83 ? OAW BXC 249 A 1 HETATM 24 C CAX BXC . . . C 3 16.534 31.801 41.323 1 29.57 ? CAX BXC 249 A 1 HETATM 25 C CAY BXC . . . C 3 16.602 30.93 40.074 1 30.5 ? CAY BXC 249 A 1 HETATM 26 O OAZ BXC . . . C 3 17.059 31.677 38.959 1 28.74 ? OAZ BXC 249 A 1 HETATM 27 C CBA BXC . . . C 3 17.485 29.694 40.294 1 31.31 ? CBA BXC 249 A 1 HETATM 28 O OBB BXC . . . C 3 18.758 29.896 39.708 1 34.57 ? OBB BXC 249 A 1 HETATM 29 C CBC BXC . . . C 3 17.676 29.314 41.786 1 31.48 ? CBC BXC 249 A 1 HETATM 30 O OBD BXC . . . C 3 19.01 29.627 42.252 1 33.36 ? OBD BXC 249 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #