data_3MBZ # _model_server_result.job_id qIgLVJKfCtNS5OYj9_sG0g _model_server_result.datetime_utc '2024-11-16 05:02:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mbz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":276}' # _entry.id 3MBZ # _exptl.entry_id 3MBZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 426.401 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S,3R)-2-[(7-aminocarbonyl-2-methanoyl-indolizin-3-yl)amino]-4-aminocarbonyloxy-3-methyl-3-sulfino-butanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MBZ _cell.length_a 103.083 _cell.length_b 103.083 _cell.length_c 85.802 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MBZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A N KCX 53 A KCX 84 1_555 A C PHE 52 A PHE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C KCX 53 A KCX 84 1_555 A N MET 54 A MET 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 C C10 MXC . A MXC 276 1_555 A OG SER 50 A SER 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? # _chem_comp.formula 'C16 H18 N4 O8 S' _chem_comp.formula_weight 426.401 _chem_comp.id MXC _chem_comp.mon_nstd_flag . _chem_comp.name '(2S,3R)-2-[(7-aminocarbonyl-2-methanoyl-indolizin-3-yl)amino]-4-aminocarbonyloxy-3-methyl-3-sulfino-butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3MBZ _atom_sites.fract_transf_matrix[1][1] 0.009701 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009701 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1 1 SO4 SO4 . C 3 MXC A 1 276 1 MXC MXC . D 4 HOH A 1 2 2 HOH HOH . D 4 HOH A 2 4 4 HOH HOH . D 4 HOH A 3 5 5 HOH HOH . D 4 HOH A 4 6 6 HOH HOH . D 4 HOH A 5 7 7 HOH HOH . D 4 HOH A 6 8 8 HOH HOH . D 4 HOH A 7 9 9 HOH HOH . D 4 HOH A 8 10 10 HOH HOH . D 4 HOH A 9 11 11 HOH HOH . D 4 HOH A 10 12 12 HOH HOH . D 4 HOH A 11 14 14 HOH HOH . D 4 HOH A 12 15 15 HOH HOH . D 4 HOH A 13 16 16 HOH HOH . D 4 HOH A 14 18 18 HOH HOH . D 4 HOH A 15 19 19 HOH HOH . D 4 HOH A 16 20 20 HOH HOH . D 4 HOH A 17 22 22 HOH HOH . D 4 HOH A 18 23 23 HOH HOH . D 4 HOH A 19 24 24 HOH HOH . D 4 HOH A 20 25 25 HOH HOH . D 4 HOH A 21 28 28 HOH HOH . D 4 HOH A 22 29 29 HOH HOH . D 4 HOH A 23 31 31 HOH HOH . D 4 HOH A 24 277 1 HOH HOH . D 4 HOH A 25 278 32 HOH HOH . D 4 HOH A 26 279 33 HOH HOH . D 4 HOH A 27 280 34 HOH HOH . D 4 HOH A 28 281 35 HOH HOH . D 4 HOH A 29 282 38 HOH HOH . D 4 HOH A 30 283 39 HOH HOH . D 4 HOH A 31 284 41 HOH HOH . D 4 HOH A 32 285 42 HOH HOH . D 4 HOH A 33 286 43 HOH HOH . D 4 HOH A 34 287 44 HOH HOH . D 4 HOH A 35 288 45 HOH HOH . D 4 HOH A 36 289 48 HOH HOH . D 4 HOH A 37 290 49 HOH HOH . D 4 HOH A 38 291 50 HOH HOH . D 4 HOH A 39 292 52 HOH HOH . D 4 HOH A 40 293 56 HOH HOH . D 4 HOH A 41 294 58 HOH HOH . D 4 HOH A 42 295 59 HOH HOH . D 4 HOH A 43 296 60 HOH HOH . D 4 HOH A 44 297 61 HOH HOH . D 4 HOH A 45 298 62 HOH HOH . D 4 HOH A 46 299 64 HOH HOH . D 4 HOH A 47 300 65 HOH HOH . D 4 HOH A 48 301 67 HOH HOH . D 4 HOH A 49 302 68 HOH HOH . D 4 HOH A 50 303 69 HOH HOH . D 4 HOH A 51 304 70 HOH HOH . D 4 HOH A 52 305 71 HOH HOH . D 4 HOH A 53 306 72 HOH HOH . D 4 HOH A 54 307 73 HOH HOH . D 4 HOH A 55 308 77 HOH HOH . D 4 HOH A 56 309 78 HOH HOH . D 4 HOH A 57 310 79 HOH HOH . D 4 HOH A 58 311 80 HOH HOH . D 4 HOH A 59 312 81 HOH HOH . D 4 HOH A 60 313 82 HOH HOH . D 4 HOH A 61 314 83 HOH HOH . D 4 HOH A 62 315 84 HOH HOH . D 4 HOH A 63 316 85 HOH HOH . D 4 HOH A 64 317 87 HOH HOH . D 4 HOH A 65 318 88 HOH HOH . D 4 HOH A 66 319 89 HOH HOH . D 4 HOH A 67 320 90 HOH HOH . D 4 HOH A 68 321 91 HOH HOH . D 4 HOH A 69 322 92 HOH HOH . D 4 HOH A 70 323 93 HOH HOH . D 4 HOH A 71 324 94 HOH HOH . D 4 HOH A 72 325 95 HOH HOH . D 4 HOH A 73 326 96 HOH HOH . D 4 HOH A 74 327 97 HOH HOH . D 4 HOH A 75 328 98 HOH HOH . D 4 HOH A 76 329 99 HOH HOH . D 4 HOH A 77 330 101 HOH HOH . D 4 HOH A 78 331 102 HOH HOH . D 4 HOH A 79 332 103 HOH HOH . D 4 HOH A 80 333 104 HOH HOH . D 4 HOH A 81 334 105 HOH HOH . D 4 HOH A 82 335 106 HOH HOH . D 4 HOH A 83 336 107 HOH HOH . D 4 HOH A 84 337 108 HOH HOH . D 4 HOH A 85 338 109 HOH HOH . D 4 HOH A 86 339 110 HOH HOH . D 4 HOH A 87 340 111 HOH HOH . D 4 HOH A 88 341 112 HOH HOH . D 4 HOH A 89 342 115 HOH HOH . D 4 HOH A 90 343 116 HOH HOH . D 4 HOH A 91 344 123 HOH HOH . D 4 HOH A 92 345 124 HOH HOH . D 4 HOH A 93 346 127 HOH HOH . D 4 HOH A 94 347 128 HOH HOH . D 4 HOH A 95 348 138 HOH HOH . D 4 HOH A 96 349 141 HOH HOH . D 4 HOH A 97 350 148 HOH HOH . D 4 HOH A 98 351 151 HOH HOH . D 4 HOH A 99 352 152 HOH HOH . D 4 HOH A 100 353 153 HOH HOH . D 4 HOH A 101 354 155 HOH HOH . D 4 HOH A 102 355 158 HOH HOH . D 4 HOH A 103 356 159 HOH HOH . D 4 HOH A 104 357 173 HOH HOH . D 4 HOH A 105 358 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MXC . . . C 3 107.791 32.821 27.833 1 55.67 ? C1 MXC 276 A 1 HETATM 2 C C2 MXC . . . C 3 107.057 31.645 27.967 1 54.93 ? C2 MXC 276 A 1 HETATM 3 C C3 MXC . . . C 3 105.877 31.625 28.7 1 53.5 ? C3 MXC 276 A 1 HETATM 4 C C4 MXC . . . C 3 105.037 30.623 28.955 1 52.36 ? C4 MXC 276 A 1 HETATM 5 C C5 MXC . . . C 3 104.046 31.073 29.712 1 52.88 ? C5 MXC 276 A 1 HETATM 6 C C6 MXC . . . C 3 104.225 32.432 29.967 1 53.81 ? C6 MXC 276 A 1 HETATM 7 C C7 MXC . . . C 3 106.15 34.006 29.173 1 54.81 ? C7 MXC 276 A 1 HETATM 8 C C8 MXC . . . C 3 107.339 34.004 28.436 1 54.23 ? C8 MXC 276 A 1 HETATM 9 C C9 MXC . . . C 3 109.09 32.761 27.011 1 55.89 ? C9 MXC 276 A 1 HETATM 10 C C10 MXC . . . C 3 102.892 30.172 30.16 1 44.23 ? C10 MXC 276 A 1 HETATM 11 C C11 MXC . . . C 3 103.576 33.522 32.097 1 56.81 ? C11 MXC 276 A 1 HETATM 12 C C12 MXC . . . C 3 104.441 34.777 32.235 1 57.7 ? C12 MXC 276 A 1 HETATM 13 C C13 MXC . . . C 3 102.201 33.744 32.803 1 57.38 ? C13 MXC 276 A 1 HETATM 14 C C14 MXC . . . C 3 101.676 35.198 32.676 1 57.04 ? C14 MXC 276 A 1 HETATM 15 C C15 MXC . . . C 3 102.425 33.384 34.298 1 59.05 ? C15 MXC 276 A 1 HETATM 16 C C16 MXC . . . C 3 101.452 33.264 36.359 1 65.98 ? C16 MXC 276 A 1 HETATM 17 N N1 MXC . . . C 3 105.407 32.805 29.314 1 54.18 ? N1 MXC 276 A 1 HETATM 18 N N2 MXC . . . C 3 109.815 33.878 27.016 1 60.32 ? N2 MXC 276 A 1 HETATM 19 N N3 MXC . . . C 3 103.406 33.223 30.665 1 54.95 ? N3 MXC 276 A 1 HETATM 20 N N4 MXC . . . C 3 100.194 33.302 36.819 1 65.22 ? N4 MXC 276 A 1 HETATM 21 O O1 MXC . . . C 3 102.024 30.068 29.289 1 47.65 ? O1 MXC 276 A 1 HETATM 22 O O2 MXC . . . C 3 109.411 31.735 26.405 1 51.43 ? O2 MXC 276 A 1 HETATM 23 O O3 MXC . . . C 3 104.776 35.336 31.163 1 58.5 ? O3 MXC 276 A 1 HETATM 24 O O4 MXC . . . C 3 104.708 35.178 33.401 1 58.37 ? O4 MXC 276 A 1 HETATM 25 O O5 MXC . . . C 3 99.648 32.724 32.914 1 49.01 ? O5 MXC 276 A 1 HETATM 26 O O6 MXC . . . C 3 101.38 31.256 32.066 1 49.29 ? O6 MXC 276 A 1 HETATM 27 O O7 MXC . . . C 3 101.813 34.149 35.372 1 62.09 ? O7 MXC 276 A 1 HETATM 28 O O8 MXC . . . C 3 102.286 32.444 36.765 1 65.49 ? O8 MXC 276 A 1 HETATM 29 S S1 MXC . . . C 3 100.913 32.621 32.103 1 56.69 ? S1 MXC 276 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 376 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #