data_3MCN # _model_server_result.job_id w67wJwD1xkgPeuaPaI5pIg _model_server_result.datetime_utc '2024-11-26 12:43:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mcn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":424}' # _entry.id 3MCN # _exptl.entry_id 3MCN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 171.114 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,6-diamino-5-nitropyrimidin-4(3H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 91 _cell.angle_beta 80.11 _cell.angle_gamma 68.29 _cell.entry_id 3MCN _cell.length_a 42.902 _cell.length_b 58.19 _cell.length_c 105.077 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MCN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,H 1 1 B,D,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 121 A ASP 101 1_555 C MG MG . A MG 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc2 A OD1 ASP 123 A ASP 103 1_555 C MG MG . A MG 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? metalc ? metalc3 B O ASP 121 B ASP 101 1_555 F MG MG . B MG 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? metalc ? metalc4 B OD1 ASP 121 B ASP 101 1_555 G MG MG . B MG 426 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.818 ? metalc ? metalc5 B O LEU 122 B LEU 102 1_555 G MG MG . B MG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc6 B OD2 ASP 123 B ASP 103 1_555 F MG MG . B MG 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc7 B OD1 ASP 123 B ASP 103 1_555 G MG MG . B MG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc8 E O9 B57 . B B57 424 1_555 F MG MG . B MG 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc9 F MG MG . B MG 425 1_555 I O HOH . B HOH 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.958 ? # _chem_comp.formula 'C4 H5 N5 O3' _chem_comp.formula_weight 171.114 _chem_comp.id B57 _chem_comp.mon_nstd_flag . _chem_comp.name 2,6-diamino-5-nitropyrimidin-4(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O7 C1 B57 doub 70 n n C1 C6 B57 sing 71 n n C1 N2 B57 sing 72 n n C6 N8 B57 sing 73 n n C6 C5 B57 doub 74 n n N8 O10 B57 sing 75 n n N8 O9 B57 doub 76 n n N2 C3 B57 sing 77 n n N2 HN2 B57 sing 78 n n C3 N11 B57 sing 79 n n C3 N4 B57 doub 80 n n N11 HN11 B57 sing 81 n n N11 HN1A B57 sing 82 n n N4 C5 B57 sing 83 n n C5 N12 B57 sing 84 n n N12 HN12 B57 sing 85 n n N12 HN1B B57 sing 86 n n # _atom_sites.entry_id 3MCN _atom_sites.fract_transf_matrix[1][1] 0.023309 _atom_sites.fract_transf_matrix[1][2] -0.009282 _atom_sites.fract_transf_matrix[1][3] -0.004905 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018498 _atom_sites.fract_transf_matrix[2][3] 0.001644 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009699 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 423 3 MG MG . D 3 B57 B 1 423 1 B57 B57 . E 3 B57 B 1 424 2 B57 B57 . F 2 MG B 1 425 1 MG MG . G 2 MG B 1 426 2 MG MG . H 4 HOH A 1 424 3 HOH HOH . H 4 HOH A 2 425 4 HOH HOH . H 4 HOH A 3 426 7 HOH HOH . H 4 HOH A 4 427 11 HOH HOH . H 4 HOH A 5 428 15 HOH HOH . H 4 HOH A 6 429 16 HOH HOH . H 4 HOH A 7 430 17 HOH HOH . H 4 HOH A 8 431 19 HOH HOH . H 4 HOH A 9 432 21 HOH HOH . H 4 HOH A 10 433 22 HOH HOH . H 4 HOH A 11 434 23 HOH HOH . H 4 HOH A 12 435 25 HOH HOH . H 4 HOH A 13 436 28 HOH HOH . H 4 HOH A 14 437 32 HOH HOH . H 4 HOH A 15 438 33 HOH HOH . H 4 HOH A 16 439 35 HOH HOH . H 4 HOH A 17 440 36 HOH HOH . H 4 HOH A 18 441 41 HOH HOH . H 4 HOH A 19 442 42 HOH HOH . H 4 HOH A 20 443 44 HOH HOH . H 4 HOH A 21 444 48 HOH HOH . H 4 HOH A 22 445 53 HOH HOH . H 4 HOH A 23 446 54 HOH HOH . H 4 HOH A 24 447 55 HOH HOH . H 4 HOH A 25 448 56 HOH HOH . H 4 HOH A 26 449 57 HOH HOH . H 4 HOH A 27 450 59 HOH HOH . H 4 HOH A 28 451 60 HOH HOH . H 4 HOH A 29 452 64 HOH HOH . H 4 HOH A 30 453 71 HOH HOH . H 4 HOH A 31 454 73 HOH HOH . H 4 HOH A 32 455 76 HOH HOH . H 4 HOH A 33 456 78 HOH HOH . H 4 HOH A 34 457 79 HOH HOH . H 4 HOH A 35 458 82 HOH HOH . H 4 HOH A 36 459 83 HOH HOH . H 4 HOH A 37 460 88 HOH HOH . H 4 HOH A 38 461 89 HOH HOH . H 4 HOH A 39 462 91 HOH HOH . H 4 HOH A 40 463 93 HOH HOH . H 4 HOH A 41 464 96 HOH HOH . H 4 HOH A 42 465 99 HOH HOH . H 4 HOH A 43 466 104 HOH HOH . H 4 HOH A 44 467 105 HOH HOH . H 4 HOH A 45 468 106 HOH HOH . H 4 HOH A 46 469 108 HOH HOH . H 4 HOH A 47 470 111 HOH HOH . H 4 HOH A 48 471 112 HOH HOH . H 4 HOH A 49 472 115 HOH HOH . H 4 HOH A 50 473 117 HOH HOH . H 4 HOH A 51 474 122 HOH HOH . H 4 HOH A 52 475 124 HOH HOH . H 4 HOH A 53 476 125 HOH HOH . H 4 HOH A 54 477 126 HOH HOH . H 4 HOH A 55 478 127 HOH HOH . H 4 HOH A 56 479 128 HOH HOH . H 4 HOH A 57 480 129 HOH HOH . H 4 HOH A 58 481 130 HOH HOH . H 4 HOH A 59 482 131 HOH HOH . H 4 HOH A 60 483 134 HOH HOH . H 4 HOH A 61 484 138 HOH HOH . H 4 HOH A 62 485 139 HOH HOH . H 4 HOH A 63 486 142 HOH HOH . H 4 HOH A 64 487 143 HOH HOH . H 4 HOH A 65 488 144 HOH HOH . H 4 HOH A 66 489 145 HOH HOH . H 4 HOH A 67 490 148 HOH HOH . H 4 HOH A 68 491 149 HOH HOH . H 4 HOH A 69 492 150 HOH HOH . H 4 HOH A 70 493 151 HOH HOH . H 4 HOH A 71 494 152 HOH HOH . H 4 HOH A 72 495 154 HOH HOH . H 4 HOH A 73 496 156 HOH HOH . H 4 HOH A 74 497 160 HOH HOH . H 4 HOH A 75 498 163 HOH HOH . H 4 HOH A 76 499 164 HOH HOH . I 4 HOH B 1 427 1 HOH HOH . I 4 HOH B 2 428 2 HOH HOH . I 4 HOH B 3 429 5 HOH HOH . I 4 HOH B 4 430 6 HOH HOH . I 4 HOH B 5 431 8 HOH HOH . I 4 HOH B 6 432 9 HOH HOH . I 4 HOH B 7 433 10 HOH HOH . I 4 HOH B 8 434 12 HOH HOH . I 4 HOH B 9 435 13 HOH HOH . I 4 HOH B 10 436 14 HOH HOH . I 4 HOH B 11 437 18 HOH HOH . I 4 HOH B 12 438 20 HOH HOH . I 4 HOH B 13 439 24 HOH HOH . I 4 HOH B 14 440 26 HOH HOH . I 4 HOH B 15 441 27 HOH HOH . I 4 HOH B 16 442 29 HOH HOH . I 4 HOH B 17 443 30 HOH HOH . I 4 HOH B 18 444 31 HOH HOH . I 4 HOH B 19 445 34 HOH HOH . I 4 HOH B 20 446 37 HOH HOH . I 4 HOH B 21 447 38 HOH HOH . I 4 HOH B 22 448 39 HOH HOH . I 4 HOH B 23 449 40 HOH HOH . I 4 HOH B 24 450 43 HOH HOH . I 4 HOH B 25 451 45 HOH HOH . I 4 HOH B 26 452 46 HOH HOH . I 4 HOH B 27 453 47 HOH HOH . I 4 HOH B 28 454 49 HOH HOH . I 4 HOH B 29 455 50 HOH HOH . I 4 HOH B 30 456 51 HOH HOH . I 4 HOH B 31 457 52 HOH HOH . I 4 HOH B 32 458 58 HOH HOH . I 4 HOH B 33 459 61 HOH HOH . I 4 HOH B 34 460 62 HOH HOH . I 4 HOH B 35 461 63 HOH HOH . I 4 HOH B 36 462 65 HOH HOH . I 4 HOH B 37 463 66 HOH HOH . I 4 HOH B 38 464 67 HOH HOH . I 4 HOH B 39 465 68 HOH HOH . I 4 HOH B 40 466 69 HOH HOH . I 4 HOH B 41 467 70 HOH HOH . I 4 HOH B 42 468 72 HOH HOH . I 4 HOH B 43 469 74 HOH HOH . I 4 HOH B 44 470 75 HOH HOH . I 4 HOH B 45 471 77 HOH HOH . I 4 HOH B 46 472 80 HOH HOH . I 4 HOH B 47 473 81 HOH HOH . I 4 HOH B 48 474 84 HOH HOH . I 4 HOH B 49 475 85 HOH HOH . I 4 HOH B 50 476 86 HOH HOH . I 4 HOH B 51 477 87 HOH HOH . I 4 HOH B 52 478 90 HOH HOH . I 4 HOH B 53 479 92 HOH HOH . I 4 HOH B 54 480 94 HOH HOH . I 4 HOH B 55 481 95 HOH HOH . I 4 HOH B 56 482 97 HOH HOH . I 4 HOH B 57 483 98 HOH HOH . I 4 HOH B 58 484 100 HOH HOH . I 4 HOH B 59 485 101 HOH HOH . I 4 HOH B 60 486 102 HOH HOH . I 4 HOH B 61 487 103 HOH HOH . I 4 HOH B 62 488 107 HOH HOH . I 4 HOH B 63 489 109 HOH HOH . I 4 HOH B 64 490 110 HOH HOH . I 4 HOH B 65 491 113 HOH HOH . I 4 HOH B 66 492 114 HOH HOH . I 4 HOH B 67 493 116 HOH HOH . I 4 HOH B 68 494 118 HOH HOH . I 4 HOH B 69 495 119 HOH HOH . I 4 HOH B 70 496 120 HOH HOH . I 4 HOH B 71 497 121 HOH HOH . I 4 HOH B 72 498 123 HOH HOH . I 4 HOH B 73 499 132 HOH HOH . I 4 HOH B 74 500 133 HOH HOH . I 4 HOH B 75 501 135 HOH HOH . I 4 HOH B 76 502 136 HOH HOH . I 4 HOH B 77 503 137 HOH HOH . I 4 HOH B 78 504 140 HOH HOH . I 4 HOH B 79 505 141 HOH HOH . I 4 HOH B 80 506 146 HOH HOH . I 4 HOH B 81 507 147 HOH HOH . I 4 HOH B 82 508 155 HOH HOH . I 4 HOH B 83 509 157 HOH HOH . I 4 HOH B 84 510 158 HOH HOH . I 4 HOH B 85 511 159 HOH HOH . I 4 HOH B 86 512 161 HOH HOH . I 4 HOH B 87 513 162 HOH HOH . I 4 HOH B 88 514 165 HOH HOH . I 4 HOH B 89 515 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O7 B57 . . . E 3 4.734 -12.418 56.823 1 51.92 ? O7 B57 424 B 1 HETATM 2 C C1 B57 . . . E 3 5.892 -12.274 56.429 1 46.73 ? C1 B57 424 B 1 HETATM 3 C C6 B57 . . . E 3 6.19 -12.169 55.066 1 42.91 ? C6 B57 424 B 1 HETATM 4 N N8 B57 . . . E 3 5.205 -12.223 54.151 1 41.83 ? N8 B57 424 B 1 HETATM 5 O O10 B57 . . . E 3 5.456 -12.155 52.757 1 37.96 ? O10 B57 424 B 1 HETATM 6 O O9 B57 . . . E 3 3.864 -12.36 54.55 1 44.41 ? O9 B57 424 B 1 HETATM 7 N N2 B57 . . . E 3 6.915 -12.208 57.375 1 41.22 ? N2 B57 424 B 1 HETATM 8 C C3 B57 . . . E 3 8.234 -12.052 56.934 1 50.13 ? C3 B57 424 B 1 HETATM 9 N N11 B57 . . . E 3 9.217 -11.99 57.837 1 53.59 ? N11 B57 424 B 1 HETATM 10 N N4 B57 . . . E 3 8.502 -11.958 55.609 1 47.73 ? N4 B57 424 B 1 HETATM 11 C C5 B57 . . . E 3 7.526 -12.028 54.675 1 44.88 ? C5 B57 424 B 1 HETATM 12 N N12 B57 . . . E 3 7.851 -11.921 53.379 1 39.36 ? N12 B57 424 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #