data_3MCO
#
_model_server_result.job_id            7bGu0xRLnZCsWyT5-awk5g 
_model_server_result.datetime_utc      '2024-10-12 13:26:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3mco 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":424}' 
#
_entry.id    3MCO 
#
_exptl.entry_id    3MCO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              195.179 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         82 
_cell.angle_beta          81 
_cell.angle_gamma         68.08 
_cell.entry_id            3MCO 
_cell.length_a            42.521 
_cell.length_b            58.472 
_cell.length_c            109.327 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3MCO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,M 1 1 
B,H,I,J,K,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 H N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 121 A ASP 101 1_555 F MG MG . A MG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? 
metalc ? metalc2 A OD2 ASP 121 A ASP 101 1_555 G MG MG . A MG 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc3 A OD1 ASP 123 A ASP 103 1_555 F MG MG . A MG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc4 A OD2 ASP 123 A ASP 103 1_555 G MG MG . A MG 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc5 C O4 PH2 . A PH2 423 1_555 G MG MG . A MG 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc6 E O1B APC . A APC 425 1_555 F MG MG . A MG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc7 E O1A APC . A APC 425 1_555 F MG MG . A MG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc8 E O3G APC . A APC 425 1_555 G MG MG . A MG 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc9 E O1B APC . A APC 425 1_555 G MG MG . A MG 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc10 F MG MG . A MG 426 1_555 M O HOH . A HOH 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc11 B OD1 ASP 121 B ASP 101 1_555 K MG MG . B MG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc12 B OD2 ASP 121 B ASP 101 1_555 L MG MG . B MG 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? 
metalc ? metalc13 B OD1 ASP 123 B ASP 103 1_555 K MG MG . B MG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc14 B OD2 ASP 123 B ASP 103 1_555 L MG MG . B MG 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc15 H O4 PH2 . B PH2 423 1_555 L MG MG . B MG 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc16 J O1B APC . B APC 425 1_555 K MG MG . B MG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc17 J O1A APC . B APC 425 1_555 K MG MG . B MG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc18 J O3G APC . B APC 425 1_555 L MG MG . B MG 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? 
metalc ? metalc19 K MG MG . B MG 426 1_555 N O HOH . B HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
#
_chem_comp.formula           'C7 H9 N5 O2' 
_chem_comp.formula_weight    195.179 
_chem_comp.id                PH2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PH2 doub 288 n n 
N1 C9 PH2 sing 289 n n 
C2 C3 PH2 sing 290 n n 
C2 C11 PH2 sing 291 n n 
C3 N4 PH2 sing 292 n n 
C3 H31 PH2 sing 293 n n 
C3 H32 PH2 sing 294 n n 
N4 C10 PH2 sing 295 n n 
N4 HN4 PH2 sing 296 n n 
N5 C6 PH2 doub 297 n y 
N5 C10 PH2 sing 298 n y 
C6 N6 PH2 sing 299 n n 
C6 N7 PH2 sing 300 n y 
N6 HN61 PH2 sing 301 n n 
N6 HN62 PH2 sing 302 n n 
N7 C8 PH2 sing 303 n y 
N7 HN7 PH2 sing 304 n n 
C8 O8 PH2 doub 305 n n 
C8 C9 PH2 sing 306 n y 
C9 C10 PH2 doub 307 n y 
C11 O4 PH2 sing 308 n n 
C11 H111 PH2 sing 309 n n 
C11 H112 PH2 sing 310 n n 
O4 HO4 PH2 sing 311 n n 
#
_atom_sites.entry_id                     3MCO 
_atom_sites.fract_transf_matrix[1][1]    0.023518 
_atom_sites.fract_transf_matrix[1][2]    -0.009462 
_atom_sites.fract_transf_matrix[1][3]    -0.002905 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018435 
_atom_sites.fract_transf_matrix[2][3]    -0.00163 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009297 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PH2 A 1 423 1 PH2 PH2 . 
D 2 PH2 A 1 424 2 PH2 PH2 . 
E 3 APC A 1 425 1 APC APC . 
F 4 MG A 1 426 1 MG MG . 
G 4 MG A 1 427 3 MG MG . 
H 2 PH2 B 1 423 3 PH2 PH2 . 
I 2 PH2 B 1 424 4 PH2 PH2 . 
J 3 APC B 1 425 2 APC APC . 
K 4 MG B 1 426 2 MG MG . 
L 4 MG B 1 427 4 MG MG . 
M 5 HOH A 1 428 1 HOH HOH . 
M 5 HOH A 2 429 3 HOH HOH . 
M 5 HOH A 3 430 4 HOH HOH . 
M 5 HOH A 4 431 7 HOH HOH . 
M 5 HOH A 5 432 8 HOH HOH . 
M 5 HOH A 6 433 10 HOH HOH . 
M 5 HOH A 7 434 13 HOH HOH . 
M 5 HOH A 8 435 18 HOH HOH . 
M 5 HOH A 9 436 19 HOH HOH . 
M 5 HOH A 10 437 22 HOH HOH . 
M 5 HOH A 11 438 26 HOH HOH . 
M 5 HOH A 12 439 27 HOH HOH . 
M 5 HOH A 13 440 29 HOH HOH . 
M 5 HOH A 14 441 30 HOH HOH . 
M 5 HOH A 15 442 32 HOH HOH . 
M 5 HOH A 16 443 33 HOH HOH . 
M 5 HOH A 17 444 37 HOH HOH . 
M 5 HOH A 18 445 38 HOH HOH . 
M 5 HOH A 19 446 39 HOH HOH . 
M 5 HOH A 20 447 41 HOH HOH . 
M 5 HOH A 21 448 43 HOH HOH . 
M 5 HOH A 22 449 45 HOH HOH . 
M 5 HOH A 23 450 46 HOH HOH . 
M 5 HOH A 24 451 48 HOH HOH . 
M 5 HOH A 25 452 49 HOH HOH . 
M 5 HOH A 26 453 52 HOH HOH . 
M 5 HOH A 27 454 55 HOH HOH . 
M 5 HOH A 28 455 56 HOH HOH . 
M 5 HOH A 29 456 58 HOH HOH . 
N 5 HOH B 1 428 2 HOH HOH . 
N 5 HOH B 2 429 5 HOH HOH . 
N 5 HOH B 3 430 6 HOH HOH . 
N 5 HOH B 4 431 9 HOH HOH . 
N 5 HOH B 5 432 11 HOH HOH . 
N 5 HOH B 6 433 12 HOH HOH . 
N 5 HOH B 7 434 14 HOH HOH . 
N 5 HOH B 8 435 15 HOH HOH . 
N 5 HOH B 9 436 16 HOH HOH . 
N 5 HOH B 10 437 17 HOH HOH . 
N 5 HOH B 11 438 20 HOH HOH . 
N 5 HOH B 12 439 21 HOH HOH . 
N 5 HOH B 13 440 23 HOH HOH . 
N 5 HOH B 14 441 24 HOH HOH . 
N 5 HOH B 15 442 25 HOH HOH . 
N 5 HOH B 16 443 28 HOH HOH . 
N 5 HOH B 17 444 31 HOH HOH . 
N 5 HOH B 18 445 34 HOH HOH . 
N 5 HOH B 19 446 35 HOH HOH . 
N 5 HOH B 20 447 40 HOH HOH . 
N 5 HOH B 21 448 42 HOH HOH . 
N 5 HOH B 22 449 44 HOH HOH . 
N 5 HOH B 23 450 47 HOH HOH . 
N 5 HOH B 24 451 50 HOH HOH . 
N 5 HOH B 25 452 51 HOH HOH . 
N 5 HOH B 26 453 53 HOH HOH . 
N 5 HOH B 27 454 54 HOH HOH . 
N 5 HOH B 28 455 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PH2 . . . D 2 -26.716 -15.665 -103.087 1 47.41 ? N1 PH2 424 A 1 
HETATM 2 C C2 PH2 . . . D 2 -27.903 -15.336 -102.556 1 41.12 ? C2 PH2 424 A 1 
HETATM 3 C C3 PH2 . . . D 2 -27.981 -14.855 -101.256 1 37.42 ? C3 PH2 424 A 1 
HETATM 4 N N4 PH2 . . . D 2 -26.875 -14.771 -100.529 1 43.67 ? N4 PH2 424 A 1 
HETATM 5 N N5 PH2 . . . D 2 -24.571 -14.992 -100.303 1 40.87 ? N5 PH2 424 A 1 
HETATM 6 C C6 PH2 . . . D 2 -23.367 -15.322 -100.793 1 45.27 ? C6 PH2 424 A 1 
HETATM 7 N N6 PH2 . . . D 2 -22.307 -15.196 -99.996 1 38.98 ? N6 PH2 424 A 1 
HETATM 8 N N7 PH2 . . . D 2 -23.234 -15.786 -102.126 1 42.44 ? N7 PH2 424 A 1 
HETATM 9 C C8 PH2 . . . D 2 -24.385 -15.893 -102.903 1 41.82 ? C8 PH2 424 A 1 
HETATM 10 O O8 PH2 . . . D 2 -24.346 -16.292 -104.063 1 49.67 ? O8 PH2 424 A 1 
HETATM 11 C C9 PH2 . . . D 2 -25.601 -15.552 -102.355 1 40.8 ? C9 PH2 424 A 1 
HETATM 12 C C10 PH2 . . . D 2 -25.678 -15.099 -101.045 1 40.89 ? C10 PH2 424 A 1 
HETATM 13 C C11 PH2 . . . D 2 -29.154 -15.465 -103.414 1 42.6 ? C11 PH2 424 A 1 
HETATM 14 O O4 PH2 . . . D 2 -28.956 -15.955 -104.66 1 44.27 ? O4 PH2 424 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#