data_3MCY # _model_server_result.job_id pMhWS1qXM552mTZrI-A7MA _model_server_result.datetime_utc '2024-11-28 06:16:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mcy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":183}' # _entry.id 3MCY # _exptl.entry_id 3MCY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MCY _cell.length_a 198.82 _cell.length_b 198.82 _cell.length_c 198.82 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MCY _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,S 1 1 B,I,J,T 2 1 C,K,L,M,N,U 3 1 D,O,P,Q,R,V 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 L N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 44 A CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? disulf ? disulf2 B SG CYS 3 D CYS 3 1_555 B SG CYS 44 D CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? disulf ? disulf3 C SG CYS 3 B CYS 3 1_555 C SG CYS 44 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? disulf ? disulf4 D SG CYS 3 C CYS 3 1_555 D SG CYS 44 C CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc1 A OD1 ASP 47 A ASP 47 1_555 G CA CA . A CA 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc2 G CA CA . A CA 184 1_555 S O HOH . A HOH 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc3 G CA CA . A CA 184 1_555 S O HOH . A HOH 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc4 G CA CA . A CA 184 1_555 S O HOH . A HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc5 G CA CA . A CA 184 1_555 S O HOH . A HOH 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc6 B OD2 ASP 47 D ASP 47 1_555 J CA CA . D CA 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc7 C OD1 ASP 47 B ASP 47 1_555 M CA CA . B CA 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc8 M CA CA . B CA 184 1_555 U O HOH . B HOH 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc9 M CA CA . B CA 184 1_555 U O HOH . B HOH 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc10 M CA CA . B CA 184 1_555 U O HOH . B HOH 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc11 M CA CA . B CA 184 1_555 U O HOH . B HOH 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc12 D OD1 ASP 47 C ASP 47 1_555 Q CA CA . C CA 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc13 Q CA CA . C CA 184 1_555 V O HOH . C HOH 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc14 Q CA CA . C CA 184 1_555 V O HOH . C HOH 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc15 Q CA CA . C CA 184 1_555 V O HOH . C HOH 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? metalc ? metalc16 Q CA CA . C CA 184 1_555 V O HOH . C HOH 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3MCY _atom_sites.fract_transf_matrix[1][1] 0.00503 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00503 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00503 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZH1 A 1 182 182 ZH1 ZH1 . F 3 GOL A 1 183 183 GOL GOL . G 4 CA A 1 184 184 CA CA . H 5 CL A 1 185 185 CL CL . I 2 ZH1 D 1 182 182 ZH1 ZH1 . J 4 CA D 1 183 183 CA CA . K 2 ZH1 B 1 182 182 ZH1 ZH1 . L 3 GOL B 1 183 183 GOL GOL . M 4 CA B 1 184 184 CA CA . N 5 CL B 1 185 185 CL CL . O 2 ZH1 C 1 182 182 ZH1 ZH1 . P 3 GOL C 1 183 183 GOL GOL . Q 4 CA C 1 184 184 CA CA . R 5 CL C 1 185 185 CL CL . S 6 HOH A 1 186 186 HOH HOH . S 6 HOH A 2 187 187 HOH HOH . S 6 HOH A 3 188 188 HOH HOH . S 6 HOH A 4 189 189 HOH HOH . S 6 HOH A 5 190 190 HOH HOH . S 6 HOH A 6 191 191 HOH HOH . S 6 HOH A 7 192 192 HOH HOH . S 6 HOH A 8 193 193 HOH HOH . S 6 HOH A 9 194 194 HOH HOH . S 6 HOH A 10 195 195 HOH HOH . S 6 HOH A 11 196 196 HOH HOH . S 6 HOH A 12 197 197 HOH HOH . S 6 HOH A 13 198 198 HOH HOH . S 6 HOH A 14 199 199 HOH HOH . S 6 HOH A 15 200 200 HOH HOH . S 6 HOH A 16 201 201 HOH HOH . S 6 HOH A 17 202 202 HOH HOH . S 6 HOH A 18 203 203 HOH HOH . S 6 HOH A 19 204 204 HOH HOH . S 6 HOH A 20 205 205 HOH HOH . S 6 HOH A 21 206 206 HOH HOH . S 6 HOH A 22 207 207 HOH HOH . S 6 HOH A 23 208 208 HOH HOH . S 6 HOH A 24 209 209 HOH HOH . S 6 HOH A 25 210 210 HOH HOH . S 6 HOH A 26 211 211 HOH HOH . S 6 HOH A 27 212 212 HOH HOH . S 6 HOH A 28 213 213 HOH HOH . S 6 HOH A 29 214 214 HOH HOH . S 6 HOH A 30 215 215 HOH HOH . S 6 HOH A 31 216 216 HOH HOH . S 6 HOH A 32 217 217 HOH HOH . S 6 HOH A 33 218 218 HOH HOH . S 6 HOH A 34 219 219 HOH HOH . S 6 HOH A 35 220 220 HOH HOH . S 6 HOH A 36 221 221 HOH HOH . S 6 HOH A 37 222 222 HOH HOH . S 6 HOH A 38 223 223 HOH HOH . S 6 HOH A 39 224 224 HOH HOH . S 6 HOH A 40 225 225 HOH HOH . S 6 HOH A 41 226 226 HOH HOH . S 6 HOH A 42 227 227 HOH HOH . S 6 HOH A 43 228 228 HOH HOH . S 6 HOH A 44 229 229 HOH HOH . S 6 HOH A 45 230 230 HOH HOH . S 6 HOH A 46 231 231 HOH HOH . S 6 HOH A 47 232 232 HOH HOH . S 6 HOH A 48 233 233 HOH HOH . S 6 HOH A 49 235 235 HOH HOH . S 6 HOH A 50 236 236 HOH HOH . S 6 HOH A 51 237 237 HOH HOH . S 6 HOH A 52 238 238 HOH HOH . S 6 HOH A 53 239 239 HOH HOH . S 6 HOH A 54 240 240 HOH HOH . S 6 HOH A 55 241 241 HOH HOH . S 6 HOH A 56 242 242 HOH HOH . S 6 HOH A 57 243 243 HOH HOH . S 6 HOH A 58 244 244 HOH HOH . S 6 HOH A 59 245 245 HOH HOH . S 6 HOH A 60 246 246 HOH HOH . S 6 HOH A 61 247 247 HOH HOH . S 6 HOH A 62 248 248 HOH HOH . S 6 HOH A 63 249 249 HOH HOH . S 6 HOH A 64 250 250 HOH HOH . S 6 HOH A 65 251 251 HOH HOH . S 6 HOH A 66 252 252 HOH HOH . S 6 HOH A 67 253 253 HOH HOH . S 6 HOH A 68 254 254 HOH HOH . S 6 HOH A 69 255 255 HOH HOH . S 6 HOH A 70 256 256 HOH HOH . S 6 HOH A 71 257 257 HOH HOH . S 6 HOH A 72 258 258 HOH HOH . S 6 HOH A 73 259 259 HOH HOH . S 6 HOH A 74 260 260 HOH HOH . S 6 HOH A 75 261 261 HOH HOH . S 6 HOH A 76 262 262 HOH HOH . S 6 HOH A 77 263 263 HOH HOH . S 6 HOH A 78 264 264 HOH HOH . S 6 HOH A 79 265 265 HOH HOH . S 6 HOH A 80 266 266 HOH HOH . T 6 HOH D 1 184 184 HOH HOH . T 6 HOH D 2 185 185 HOH HOH . T 6 HOH D 3 186 186 HOH HOH . T 6 HOH D 4 187 187 HOH HOH . T 6 HOH D 5 188 188 HOH HOH . T 6 HOH D 6 189 189 HOH HOH . T 6 HOH D 7 190 190 HOH HOH . T 6 HOH D 8 191 191 HOH HOH . T 6 HOH D 9 192 192 HOH HOH . T 6 HOH D 10 193 193 HOH HOH . T 6 HOH D 11 194 194 HOH HOH . T 6 HOH D 12 195 195 HOH HOH . T 6 HOH D 13 196 196 HOH HOH . T 6 HOH D 14 197 197 HOH HOH . T 6 HOH D 15 198 198 HOH HOH . T 6 HOH D 16 199 199 HOH HOH . T 6 HOH D 17 200 200 HOH HOH . T 6 HOH D 18 201 201 HOH HOH . U 6 HOH B 1 186 186 HOH HOH . U 6 HOH B 2 187 187 HOH HOH . U 6 HOH B 3 188 188 HOH HOH . U 6 HOH B 4 189 189 HOH HOH . U 6 HOH B 5 190 190 HOH HOH . U 6 HOH B 6 191 191 HOH HOH . U 6 HOH B 7 192 192 HOH HOH . U 6 HOH B 8 193 193 HOH HOH . U 6 HOH B 9 194 194 HOH HOH . U 6 HOH B 10 195 195 HOH HOH . U 6 HOH B 11 196 196 HOH HOH . U 6 HOH B 12 197 197 HOH HOH . U 6 HOH B 13 198 198 HOH HOH . U 6 HOH B 14 199 199 HOH HOH . U 6 HOH B 15 200 200 HOH HOH . U 6 HOH B 16 201 201 HOH HOH . U 6 HOH B 17 202 202 HOH HOH . U 6 HOH B 18 203 203 HOH HOH . U 6 HOH B 19 204 204 HOH HOH . U 6 HOH B 20 205 205 HOH HOH . U 6 HOH B 21 206 206 HOH HOH . U 6 HOH B 22 207 207 HOH HOH . U 6 HOH B 23 208 208 HOH HOH . U 6 HOH B 24 209 209 HOH HOH . U 6 HOH B 25 210 210 HOH HOH . U 6 HOH B 26 211 211 HOH HOH . U 6 HOH B 27 212 212 HOH HOH . U 6 HOH B 28 213 213 HOH HOH . U 6 HOH B 29 214 214 HOH HOH . U 6 HOH B 30 215 215 HOH HOH . U 6 HOH B 31 216 216 HOH HOH . U 6 HOH B 32 217 217 HOH HOH . U 6 HOH B 33 218 218 HOH HOH . U 6 HOH B 34 219 219 HOH HOH . U 6 HOH B 35 220 220 HOH HOH . U 6 HOH B 36 221 221 HOH HOH . U 6 HOH B 37 222 222 HOH HOH . U 6 HOH B 38 223 223 HOH HOH . U 6 HOH B 39 224 224 HOH HOH . U 6 HOH B 40 225 225 HOH HOH . U 6 HOH B 41 226 226 HOH HOH . U 6 HOH B 42 227 227 HOH HOH . U 6 HOH B 43 228 228 HOH HOH . U 6 HOH B 44 229 229 HOH HOH . U 6 HOH B 45 230 230 HOH HOH . U 6 HOH B 46 231 231 HOH HOH . U 6 HOH B 47 232 232 HOH HOH . U 6 HOH B 48 233 233 HOH HOH . U 6 HOH B 49 234 234 HOH HOH . U 6 HOH B 50 235 234 HOH HOH . U 6 HOH B 51 236 236 HOH HOH . U 6 HOH B 52 247 247 HOH HOH . V 6 HOH C 1 186 186 HOH HOH . V 6 HOH C 2 187 187 HOH HOH . V 6 HOH C 3 188 188 HOH HOH . V 6 HOH C 4 189 189 HOH HOH . V 6 HOH C 5 190 190 HOH HOH . V 6 HOH C 6 191 191 HOH HOH . V 6 HOH C 7 192 192 HOH HOH . V 6 HOH C 8 193 193 HOH HOH . V 6 HOH C 9 194 194 HOH HOH . V 6 HOH C 10 195 195 HOH HOH . V 6 HOH C 11 196 196 HOH HOH . V 6 HOH C 12 197 197 HOH HOH . V 6 HOH C 13 198 198 HOH HOH . V 6 HOH C 14 199 199 HOH HOH . V 6 HOH C 15 200 200 HOH HOH . V 6 HOH C 16 201 201 HOH HOH . V 6 HOH C 17 202 202 HOH HOH . V 6 HOH C 18 203 203 HOH HOH . V 6 HOH C 19 204 204 HOH HOH . V 6 HOH C 20 205 205 HOH HOH . V 6 HOH C 21 206 206 HOH HOH . V 6 HOH C 22 207 207 HOH HOH . V 6 HOH C 23 208 208 HOH HOH . V 6 HOH C 24 209 209 HOH HOH . V 6 HOH C 25 210 210 HOH HOH . V 6 HOH C 26 211 211 HOH HOH . V 6 HOH C 27 212 212 HOH HOH . V 6 HOH C 28 213 213 HOH HOH . V 6 HOH C 29 214 214 HOH HOH . V 6 HOH C 30 215 215 HOH HOH . V 6 HOH C 31 216 216 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 3 -22.865 20.665 18.79 1 49.5 ? C1 GOL 183 B 1 HETATM 2 O O1 GOL . . . L 3 -23.093 21.938 19.36 1 46.71 ? O1 GOL 183 B 1 HETATM 3 C C2 GOL . . . L 3 -21.39 20.38 18.904 1 53.14 ? C2 GOL 183 B 1 HETATM 4 O O2 GOL . . . L 3 -21.06 20.55 20.272 1 56.94 ? O2 GOL 183 B 1 HETATM 5 C C3 GOL . . . L 3 -21.052 18.963 18.468 1 51.93 ? C3 GOL 183 B 1 HETATM 6 O O3 GOL . . . L 3 -20.053 18.943 17.441 1 45.66 ? O3 GOL 183 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #