data_3MDG
#
_model_server_result.job_id            '_tB3GBTPB3fYiuutccD-7g' 
_model_server_result.datetime_utc      '2025-01-02 20:17:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3mdg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":229}' 
#
_entry.id    3MDG 
#
_exptl.entry_id    3MDG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3MDG 
_cell.length_a            71.88 
_cell.length_b            73.875 
_cell.length_c            96.727 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3MDG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog TYPE_10_PAIR hydrog1 C N2 G 3 C G 3 1_555 C N1 A 5 C A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_10_PAIR hydrog2 C N3 G 3 C G 3 1_555 C N6 A 5 C A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 208 n n 
C1 C2 GOL sing 209 n n 
C1 H11 GOL sing 210 n n 
C1 H12 GOL sing 211 n n 
O1 HO1 GOL sing 212 n n 
C2 O2 GOL sing 213 n n 
C2 C3 GOL sing 214 n n 
C2 H2 GOL sing 215 n n 
O2 HO2 GOL sing 216 n n 
C3 O3 GOL sing 217 n n 
C3 H31 GOL sing 218 n n 
C3 H32 GOL sing 219 n n 
O3 HO3 GOL sing 220 n n 
#
_atom_sites.entry_id                     3MDG 
_atom_sites.fract_transf_matrix[1][1]    0.013912 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013536 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010338 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 GOL A 1 228 1 GOL GOL . 
E 3 GOL A 1 229 3 GOL GOL . 
F 3 GOL B 1 228 2 GOL GOL . 
G 4 HOH A 1 230 2 HOH HOH . 
G 4 HOH A 2 231 3 HOH HOH . 
G 4 HOH A 3 232 7 HOH HOH . 
G 4 HOH A 4 233 13 HOH HOH . 
G 4 HOH A 5 234 15 HOH HOH . 
G 4 HOH A 6 235 18 HOH HOH . 
G 4 HOH A 7 236 21 HOH HOH . 
G 4 HOH A 8 237 24 HOH HOH . 
G 4 HOH A 9 238 25 HOH HOH . 
G 4 HOH A 10 239 26 HOH HOH . 
G 4 HOH A 11 240 27 HOH HOH . 
G 4 HOH A 12 241 28 HOH HOH . 
G 4 HOH A 13 242 30 HOH HOH . 
G 4 HOH A 14 243 32 HOH HOH . 
G 4 HOH A 15 244 34 HOH HOH . 
G 4 HOH A 16 245 37 HOH HOH . 
G 4 HOH A 17 246 38 HOH HOH . 
G 4 HOH A 18 247 39 HOH HOH . 
G 4 HOH A 19 248 42 HOH HOH . 
G 4 HOH A 20 249 43 HOH HOH . 
G 4 HOH A 21 250 44 HOH HOH . 
G 4 HOH A 22 251 46 HOH HOH . 
G 4 HOH A 23 252 47 HOH HOH . 
G 4 HOH A 24 253 49 HOH HOH . 
G 4 HOH A 25 254 50 HOH HOH . 
G 4 HOH A 26 255 51 HOH HOH . 
G 4 HOH A 27 256 52 HOH HOH . 
G 4 HOH A 28 257 53 HOH HOH . 
G 4 HOH A 29 258 54 HOH HOH . 
G 4 HOH A 30 259 57 HOH HOH . 
G 4 HOH A 31 260 58 HOH HOH . 
G 4 HOH A 32 261 59 HOH HOH . 
G 4 HOH A 33 262 63 HOH HOH . 
G 4 HOH A 34 263 66 HOH HOH . 
G 4 HOH A 35 264 69 HOH HOH . 
G 4 HOH A 36 265 72 HOH HOH . 
G 4 HOH A 37 266 74 HOH HOH . 
G 4 HOH A 38 267 75 HOH HOH . 
G 4 HOH A 39 268 76 HOH HOH . 
G 4 HOH A 40 269 77 HOH HOH . 
G 4 HOH A 41 270 79 HOH HOH . 
G 4 HOH A 42 271 81 HOH HOH . 
G 4 HOH A 43 272 83 HOH HOH . 
G 4 HOH A 44 273 84 HOH HOH . 
G 4 HOH A 45 274 89 HOH HOH . 
G 4 HOH A 46 275 90 HOH HOH . 
G 4 HOH A 47 276 91 HOH HOH . 
G 4 HOH A 48 277 92 HOH HOH . 
G 4 HOH A 49 278 93 HOH HOH . 
G 4 HOH A 50 279 102 HOH HOH . 
G 4 HOH A 51 280 103 HOH HOH . 
G 4 HOH A 52 281 106 HOH HOH . 
G 4 HOH A 53 282 107 HOH HOH . 
G 4 HOH A 54 283 108 HOH HOH . 
G 4 HOH A 55 284 109 HOH HOH . 
G 4 HOH A 56 285 110 HOH HOH . 
G 4 HOH A 57 286 111 HOH HOH . 
G 4 HOH A 58 287 112 HOH HOH . 
G 4 HOH A 59 288 120 HOH HOH . 
G 4 HOH A 60 289 121 HOH HOH . 
G 4 HOH A 61 290 122 HOH HOH . 
G 4 HOH A 62 291 123 HOH HOH . 
G 4 HOH A 63 292 124 HOH HOH . 
G 4 HOH A 64 293 125 HOH HOH . 
G 4 HOH A 65 294 126 HOH HOH . 
G 4 HOH A 66 295 127 HOH HOH . 
G 4 HOH A 67 296 128 HOH HOH . 
G 4 HOH A 68 297 129 HOH HOH . 
G 4 HOH A 69 298 138 HOH HOH . 
G 4 HOH A 70 299 139 HOH HOH . 
G 4 HOH A 71 300 142 HOH HOH . 
G 4 HOH A 72 301 144 HOH HOH . 
G 4 HOH A 73 302 145 HOH HOH . 
G 4 HOH A 74 303 147 HOH HOH . 
G 4 HOH A 75 304 150 HOH HOH . 
G 4 HOH A 76 305 151 HOH HOH . 
G 4 HOH A 77 306 152 HOH HOH . 
G 4 HOH A 78 307 153 HOH HOH . 
G 4 HOH A 79 308 154 HOH HOH . 
G 4 HOH A 80 309 155 HOH HOH . 
G 4 HOH A 81 310 157 HOH HOH . 
G 4 HOH A 82 311 158 HOH HOH . 
G 4 HOH A 83 312 159 HOH HOH . 
G 4 HOH A 84 313 161 HOH HOH . 
G 4 HOH A 85 314 163 HOH HOH . 
G 4 HOH A 86 315 164 HOH HOH . 
G 4 HOH A 87 316 167 HOH HOH . 
G 4 HOH A 88 317 168 HOH HOH . 
G 4 HOH A 89 318 169 HOH HOH . 
G 4 HOH A 90 319 170 HOH HOH . 
G 4 HOH A 91 320 171 HOH HOH . 
G 4 HOH A 92 321 173 HOH HOH . 
G 4 HOH A 93 322 174 HOH HOH . 
G 4 HOH A 94 323 175 HOH HOH . 
G 4 HOH A 95 324 176 HOH HOH . 
G 4 HOH A 96 325 177 HOH HOH . 
G 4 HOH A 97 326 178 HOH HOH . 
G 4 HOH A 98 327 193 HOH HOH . 
G 4 HOH A 99 328 198 HOH HOH . 
G 4 HOH A 100 329 199 HOH HOH . 
G 4 HOH A 101 330 205 HOH HOH . 
H 4 HOH B 1 229 1 HOH HOH . 
H 4 HOH B 2 230 4 HOH HOH . 
H 4 HOH B 3 231 5 HOH HOH . 
H 4 HOH B 4 232 6 HOH HOH . 
H 4 HOH B 5 233 8 HOH HOH . 
H 4 HOH B 6 234 9 HOH HOH . 
H 4 HOH B 7 235 10 HOH HOH . 
H 4 HOH B 8 236 11 HOH HOH . 
H 4 HOH B 9 237 12 HOH HOH . 
H 4 HOH B 10 238 14 HOH HOH . 
H 4 HOH B 11 239 16 HOH HOH . 
H 4 HOH B 12 240 17 HOH HOH . 
H 4 HOH B 13 241 19 HOH HOH . 
H 4 HOH B 14 242 20 HOH HOH . 
H 4 HOH B 15 243 22 HOH HOH . 
H 4 HOH B 16 244 23 HOH HOH . 
H 4 HOH B 17 245 29 HOH HOH . 
H 4 HOH B 18 246 31 HOH HOH . 
H 4 HOH B 19 247 33 HOH HOH . 
H 4 HOH B 20 248 35 HOH HOH . 
H 4 HOH B 21 249 36 HOH HOH . 
H 4 HOH B 22 250 40 HOH HOH . 
H 4 HOH B 23 251 41 HOH HOH . 
H 4 HOH B 24 252 45 HOH HOH . 
H 4 HOH B 25 253 48 HOH HOH . 
H 4 HOH B 26 254 55 HOH HOH . 
H 4 HOH B 27 255 56 HOH HOH . 
H 4 HOH B 28 256 60 HOH HOH . 
H 4 HOH B 29 257 61 HOH HOH . 
H 4 HOH B 30 258 62 HOH HOH . 
H 4 HOH B 31 259 64 HOH HOH . 
H 4 HOH B 32 260 65 HOH HOH . 
H 4 HOH B 33 261 67 HOH HOH . 
H 4 HOH B 34 262 68 HOH HOH . 
H 4 HOH B 35 263 71 HOH HOH . 
H 4 HOH B 36 264 73 HOH HOH . 
H 4 HOH B 37 265 78 HOH HOH . 
H 4 HOH B 38 266 80 HOH HOH . 
H 4 HOH B 39 267 82 HOH HOH . 
H 4 HOH B 40 268 86 HOH HOH . 
H 4 HOH B 41 269 87 HOH HOH . 
H 4 HOH B 42 270 88 HOH HOH . 
H 4 HOH B 43 271 95 HOH HOH . 
H 4 HOH B 44 272 96 HOH HOH . 
H 4 HOH B 45 273 97 HOH HOH . 
H 4 HOH B 46 274 98 HOH HOH . 
H 4 HOH B 47 275 99 HOH HOH . 
H 4 HOH B 48 276 100 HOH HOH . 
H 4 HOH B 49 277 101 HOH HOH . 
H 4 HOH B 50 278 113 HOH HOH . 
H 4 HOH B 51 279 114 HOH HOH . 
H 4 HOH B 52 280 115 HOH HOH . 
H 4 HOH B 53 281 116 HOH HOH . 
H 4 HOH B 54 282 117 HOH HOH . 
H 4 HOH B 55 283 118 HOH HOH . 
H 4 HOH B 56 284 119 HOH HOH . 
H 4 HOH B 57 285 130 HOH HOH . 
H 4 HOH B 58 286 131 HOH HOH . 
H 4 HOH B 59 287 132 HOH HOH . 
H 4 HOH B 60 288 133 HOH HOH . 
H 4 HOH B 61 289 134 HOH HOH . 
H 4 HOH B 62 290 135 HOH HOH . 
H 4 HOH B 63 291 136 HOH HOH . 
H 4 HOH B 64 292 146 HOH HOH . 
H 4 HOH B 65 293 148 HOH HOH . 
H 4 HOH B 66 294 149 HOH HOH . 
H 4 HOH B 67 295 156 HOH HOH . 
H 4 HOH B 68 296 160 HOH HOH . 
H 4 HOH B 69 297 162 HOH HOH . 
H 4 HOH B 70 298 165 HOH HOH . 
H 4 HOH B 71 299 166 HOH HOH . 
H 4 HOH B 72 300 179 HOH HOH . 
H 4 HOH B 73 301 180 HOH HOH . 
H 4 HOH B 74 302 181 HOH HOH . 
H 4 HOH B 75 303 182 HOH HOH . 
H 4 HOH B 76 304 183 HOH HOH . 
H 4 HOH B 77 305 184 HOH HOH . 
H 4 HOH B 78 306 185 HOH HOH . 
H 4 HOH B 79 307 186 HOH HOH . 
H 4 HOH B 80 308 187 HOH HOH . 
H 4 HOH B 81 309 188 HOH HOH . 
H 4 HOH B 82 310 189 HOH HOH . 
H 4 HOH B 83 311 190 HOH HOH . 
H 4 HOH B 84 312 191 HOH HOH . 
H 4 HOH B 85 313 192 HOH HOH . 
H 4 HOH B 86 314 194 HOH HOH . 
H 4 HOH B 87 315 195 HOH HOH . 
H 4 HOH B 88 316 196 HOH HOH . 
H 4 HOH B 89 317 197 HOH HOH . 
H 4 HOH B 90 318 200 HOH HOH . 
H 4 HOH B 91 319 201 HOH HOH . 
H 4 HOH B 92 320 202 HOH HOH . 
H 4 HOH B 93 321 203 HOH HOH . 
H 4 HOH B 94 322 204 HOH HOH . 
H 4 HOH B 95 323 206 HOH HOH . 
I 4 HOH C 1 70 70 HOH HOH . 
I 4 HOH C 2 85 85 HOH HOH . 
I 4 HOH C 3 94 94 HOH HOH . 
I 4 HOH C 4 104 104 HOH HOH . 
I 4 HOH C 5 105 105 HOH HOH . 
I 4 HOH C 6 137 137 HOH HOH . 
I 4 HOH C 7 140 140 HOH HOH . 
I 4 HOH C 8 141 141 HOH HOH . 
I 4 HOH C 9 143 143 HOH HOH . 
I 4 HOH C 10 172 172 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 30.827 3.955 -20.883 1 42.21 ? C1 GOL 229 A 1 
HETATM 2 O O1 GOL . . . E 3 31.405 3.272 -19.793 1 44.04 ? O1 GOL 229 A 1 
HETATM 3 C C2 GOL . . . E 3 31.427 5.357 -20.925 1 42.95 ? C2 GOL 229 A 1 
HETATM 4 O O2 GOL . . . E 3 30.48 6.262 -21.446 1 47.76 ? O2 GOL 229 A 1 
HETATM 5 C C3 GOL . . . E 3 32.652 5.359 -21.83 1 46.34 ? C3 GOL 229 A 1 
HETATM 6 O O3 GOL . . . E 3 33.72 6.027 -21.191 1 49.08 ? O3 GOL 229 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#