data_3MDS # _model_server_result.job_id Bv4pYqYaCVTsxkUgXPVsKQ _model_server_result.datetime_utc '2025-07-23 00:44:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mds # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":204}' # _entry.id 3MDS # _exptl.entry_id 3MDS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (III) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MDS _cell.length_a 146.6 _cell.length_b 146.6 _cell.length_c 55.6 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MDS _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 28 A HIS 28 1_555 C MN MN3 . A MN3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc2 A NE2 HIS 83 A HIS 83 1_555 C MN MN3 . A MN3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc3 A OD2 ASP 166 A ASP 166 1_555 C MN MN3 . A MN3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? metalc ? metalc4 A NE2 HIS 170 A HIS 170 1_555 C MN MN3 . A MN3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc5 C MN MN3 . A MN3 204 1_555 E O HOH . A HOH 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc6 B NE2 HIS 28 B HIS 28 1_555 D MN MN3 . B MN3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc7 B NE2 HIS 83 B HIS 83 1_555 D MN MN3 . B MN3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc8 B OD2 ASP 166 B ASP 166 1_555 D MN MN3 . B MN3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.783 ? metalc ? metalc9 B NE2 HIS 170 B HIS 170 1_555 D MN MN3 . B MN3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc10 D MN MN3 . B MN3 204 1_555 F O HOH . B HOH 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? # _chem_comp.formula 'Mn 3' _chem_comp.formula_weight 54.938 _chem_comp.id MN3 _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3MDS _atom_sites.fract_transf_matrix[1][1] 0.006821 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006821 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017986 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN3 A 1 204 204 MN3 MN3 . D 2 MN3 B 1 204 204 MN3 MN3 . E 3 HOH A 1 205 205 HOH HOH . E 3 HOH A 2 206 206 HOH HOH . E 3 HOH A 3 207 207 HOH HOH . E 3 HOH A 4 208 208 HOH HOH . E 3 HOH A 5 209 209 HOH HOH . E 3 HOH A 6 210 210 HOH HOH . E 3 HOH A 7 211 211 HOH HOH . E 3 HOH A 8 212 212 HOH HOH . E 3 HOH A 9 213 213 HOH HOH . E 3 HOH A 10 214 214 HOH HOH . E 3 HOH A 11 215 215 HOH HOH . E 3 HOH A 12 216 216 HOH HOH . E 3 HOH A 13 217 217 HOH HOH . E 3 HOH A 14 218 218 HOH HOH . E 3 HOH A 15 219 219 HOH HOH . E 3 HOH A 16 220 220 HOH HOH . E 3 HOH A 17 221 221 HOH HOH . E 3 HOH A 18 222 222 HOH HOH . E 3 HOH A 19 223 223 HOH HOH . E 3 HOH A 20 224 224 HOH HOH . E 3 HOH A 21 225 225 HOH HOH . E 3 HOH A 22 226 226 HOH HOH . E 3 HOH A 23 227 227 HOH HOH . E 3 HOH A 24 228 228 HOH HOH . E 3 HOH A 25 229 229 HOH HOH . E 3 HOH A 26 230 230 HOH HOH . E 3 HOH A 27 231 231 HOH HOH . E 3 HOH A 28 232 232 HOH HOH . E 3 HOH A 29 233 233 HOH HOH . E 3 HOH A 30 234 234 HOH HOH . E 3 HOH A 31 235 235 HOH HOH . E 3 HOH A 32 236 236 HOH HOH . E 3 HOH A 33 237 237 HOH HOH . E 3 HOH A 34 238 238 HOH HOH . E 3 HOH A 35 239 239 HOH HOH . E 3 HOH A 36 240 240 HOH HOH . E 3 HOH A 37 241 241 HOH HOH . E 3 HOH A 38 242 242 HOH HOH . E 3 HOH A 39 243 243 HOH HOH . E 3 HOH A 40 244 244 HOH HOH . E 3 HOH A 41 245 245 HOH HOH . E 3 HOH A 42 246 246 HOH HOH . E 3 HOH A 43 247 247 HOH HOH . E 3 HOH A 44 248 248 HOH HOH . E 3 HOH A 45 249 249 HOH HOH . E 3 HOH A 46 250 250 HOH HOH . E 3 HOH A 47 251 251 HOH HOH . E 3 HOH A 48 252 252 HOH HOH . E 3 HOH A 49 253 253 HOH HOH . E 3 HOH A 50 254 254 HOH HOH . E 3 HOH A 51 255 255 HOH HOH . E 3 HOH A 52 256 256 HOH HOH . E 3 HOH A 53 257 257 HOH HOH . E 3 HOH A 54 258 258 HOH HOH . E 3 HOH A 55 259 259 HOH HOH . E 3 HOH A 56 260 260 HOH HOH . E 3 HOH A 57 261 261 HOH HOH . E 3 HOH A 58 262 262 HOH HOH . E 3 HOH A 59 263 263 HOH HOH . E 3 HOH A 60 264 264 HOH HOH . E 3 HOH A 61 265 265 HOH HOH . E 3 HOH A 62 266 266 HOH HOH . E 3 HOH A 63 267 267 HOH HOH . E 3 HOH A 64 268 268 HOH HOH . E 3 HOH A 65 269 269 HOH HOH . E 3 HOH A 66 270 270 HOH HOH . E 3 HOH A 67 271 271 HOH HOH . E 3 HOH A 68 272 272 HOH HOH . E 3 HOH A 69 273 273 HOH HOH . E 3 HOH A 70 274 274 HOH HOH . E 3 HOH A 71 300 300 HOH HOH . E 3 HOH A 72 301 301 HOH HOH . E 3 HOH A 73 303 303 HOH HOH . E 3 HOH A 74 305 305 HOH HOH . E 3 HOH A 75 307 307 HOH HOH . E 3 HOH A 76 309 309 HOH HOH . E 3 HOH A 77 311 311 HOH HOH . E 3 HOH A 78 313 313 HOH HOH . E 3 HOH A 79 315 315 HOH HOH . E 3 HOH A 80 317 317 HOH HOH . E 3 HOH A 81 319 319 HOH HOH . E 3 HOH A 82 321 321 HOH HOH . E 3 HOH A 83 323 323 HOH HOH . E 3 HOH A 84 325 325 HOH HOH . E 3 HOH A 85 329 329 HOH HOH . E 3 HOH A 86 331 331 HOH HOH . E 3 HOH A 87 333 333 HOH HOH . E 3 HOH A 88 335 335 HOH HOH . E 3 HOH A 89 337 337 HOH HOH . E 3 HOH A 90 341 341 HOH HOH . E 3 HOH A 91 343 343 HOH HOH . F 3 HOH B 1 205 205 HOH HOH . F 3 HOH B 2 206 206 HOH HOH . F 3 HOH B 3 207 207 HOH HOH . F 3 HOH B 4 208 208 HOH HOH . F 3 HOH B 5 209 209 HOH HOH . F 3 HOH B 6 210 210 HOH HOH . F 3 HOH B 7 211 211 HOH HOH . F 3 HOH B 8 212 212 HOH HOH . F 3 HOH B 9 213 213 HOH HOH . F 3 HOH B 10 214 214 HOH HOH . F 3 HOH B 11 215 215 HOH HOH . F 3 HOH B 12 216 216 HOH HOH . F 3 HOH B 13 217 217 HOH HOH . F 3 HOH B 14 218 218 HOH HOH . F 3 HOH B 15 219 219 HOH HOH . F 3 HOH B 16 220 220 HOH HOH . F 3 HOH B 17 221 221 HOH HOH . F 3 HOH B 18 222 222 HOH HOH . F 3 HOH B 19 223 223 HOH HOH . F 3 HOH B 20 224 224 HOH HOH . F 3 HOH B 21 225 225 HOH HOH . F 3 HOH B 22 226 226 HOH HOH . F 3 HOH B 23 227 227 HOH HOH . F 3 HOH B 24 228 228 HOH HOH . F 3 HOH B 25 229 229 HOH HOH . F 3 HOH B 26 230 230 HOH HOH . F 3 HOH B 27 231 231 HOH HOH . F 3 HOH B 28 232 232 HOH HOH . F 3 HOH B 29 233 233 HOH HOH . F 3 HOH B 30 234 234 HOH HOH . F 3 HOH B 31 235 235 HOH HOH . F 3 HOH B 32 236 236 HOH HOH . F 3 HOH B 33 237 237 HOH HOH . F 3 HOH B 34 238 238 HOH HOH . F 3 HOH B 35 239 239 HOH HOH . F 3 HOH B 36 240 240 HOH HOH . F 3 HOH B 37 241 241 HOH HOH . F 3 HOH B 38 242 242 HOH HOH . F 3 HOH B 39 243 243 HOH HOH . F 3 HOH B 40 244 244 HOH HOH . F 3 HOH B 41 245 245 HOH HOH . F 3 HOH B 42 246 246 HOH HOH . F 3 HOH B 43 247 247 HOH HOH . F 3 HOH B 44 248 248 HOH HOH . F 3 HOH B 45 249 249 HOH HOH . F 3 HOH B 46 250 250 HOH HOH . F 3 HOH B 47 251 251 HOH HOH . F 3 HOH B 48 252 252 HOH HOH . F 3 HOH B 49 253 253 HOH HOH . F 3 HOH B 50 254 254 HOH HOH . F 3 HOH B 51 255 255 HOH HOH . F 3 HOH B 52 256 256 HOH HOH . F 3 HOH B 53 257 257 HOH HOH . F 3 HOH B 54 258 258 HOH HOH . F 3 HOH B 55 259 259 HOH HOH . F 3 HOH B 56 260 260 HOH HOH . F 3 HOH B 57 261 261 HOH HOH . F 3 HOH B 58 262 262 HOH HOH . F 3 HOH B 59 263 263 HOH HOH . F 3 HOH B 60 264 264 HOH HOH . F 3 HOH B 61 265 265 HOH HOH . F 3 HOH B 62 266 266 HOH HOH . F 3 HOH B 63 267 267 HOH HOH . F 3 HOH B 64 268 268 HOH HOH . F 3 HOH B 65 269 269 HOH HOH . F 3 HOH B 66 270 270 HOH HOH . F 3 HOH B 67 271 271 HOH HOH . F 3 HOH B 68 272 272 HOH HOH . F 3 HOH B 69 273 273 HOH HOH . F 3 HOH B 70 274 274 HOH HOH . F 3 HOH B 71 299 299 HOH HOH . F 3 HOH B 72 302 302 HOH HOH . F 3 HOH B 73 304 304 HOH HOH . F 3 HOH B 74 306 306 HOH HOH . F 3 HOH B 75 308 308 HOH HOH . F 3 HOH B 76 310 310 HOH HOH . F 3 HOH B 77 312 312 HOH HOH . F 3 HOH B 78 314 314 HOH HOH . F 3 HOH B 79 316 316 HOH HOH . F 3 HOH B 80 318 318 HOH HOH . F 3 HOH B 81 320 320 HOH HOH . F 3 HOH B 82 322 322 HOH HOH . F 3 HOH B 83 324 324 HOH HOH . F 3 HOH B 84 326 326 HOH HOH . F 3 HOH B 85 328 328 HOH HOH . F 3 HOH B 86 330 330 HOH HOH . F 3 HOH B 87 332 332 HOH HOH . F 3 HOH B 88 334 334 HOH HOH . F 3 HOH B 89 336 336 HOH HOH . F 3 HOH B 90 338 338 HOH HOH . F 3 HOH B 91 340 340 HOH HOH . F 3 HOH B 92 342 342 HOH HOH . F 3 HOH B 93 344 344 HOH HOH . F 3 HOH B 94 346 346 HOH HOH . F 3 HOH B 95 348 348 HOH HOH . F 3 HOH B 96 350 350 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN3 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 14.535 _atom_site.Cartn_y 45.381 _atom_site.Cartn_z -6.142 _atom_site.occupancy 0.97 _atom_site.B_iso_or_equiv 7.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN3 _atom_site.auth_seq_id 204 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #