data_3MDX
#
_model_server_result.job_id            v7U-r65gkl99eD7utEpe4w 
_model_server_result.datetime_utc      '2024-10-19 19:23:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3mdx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":202}' 
#
_entry.id    3MDX 
#
_exptl.entry_id    3MDX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3MDX 
_cell.length_a            67.88 
_cell.length_b            67.88 
_cell.length_c            95.89 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3MDX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 33.94 -58.785804 0 
3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 67.88 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     3MDX 
_atom_sites.fract_transf_matrix[1][1]    0.014732 
_atom_sites.fract_transf_matrix[1][2]    0.008505 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017011 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010429 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 202 202 EDO EDO . 
C 3 HOH A 1 158 158 HOH HOH . 
C 3 HOH A 2 159 159 HOH HOH . 
C 3 HOH A 3 160 160 HOH HOH . 
C 3 HOH A 4 161 161 HOH HOH . 
C 3 HOH A 5 162 162 HOH HOH . 
C 3 HOH A 6 163 163 HOH HOH . 
C 3 HOH A 7 164 164 HOH HOH . 
C 3 HOH A 8 165 165 HOH HOH . 
C 3 HOH A 9 166 166 HOH HOH . 
C 3 HOH A 10 167 167 HOH HOH . 
C 3 HOH A 11 168 168 HOH HOH . 
C 3 HOH A 12 169 169 HOH HOH . 
C 3 HOH A 13 170 170 HOH HOH . 
C 3 HOH A 14 171 171 HOH HOH . 
C 3 HOH A 15 172 172 HOH HOH . 
C 3 HOH A 16 173 173 HOH HOH . 
C 3 HOH A 17 174 174 HOH HOH . 
C 3 HOH A 18 175 175 HOH HOH . 
C 3 HOH A 19 176 176 HOH HOH . 
C 3 HOH A 20 177 177 HOH HOH . 
C 3 HOH A 21 178 178 HOH HOH . 
C 3 HOH A 22 179 179 HOH HOH . 
C 3 HOH A 23 180 180 HOH HOH . 
C 3 HOH A 24 181 181 HOH HOH . 
C 3 HOH A 25 182 1 HOH HOH . 
C 3 HOH A 26 183 2 HOH HOH . 
C 3 HOH A 27 184 3 HOH HOH . 
C 3 HOH A 28 185 4 HOH HOH . 
C 3 HOH A 29 186 5 HOH HOH . 
C 3 HOH A 30 187 6 HOH HOH . 
C 3 HOH A 31 188 7 HOH HOH . 
C 3 HOH A 32 189 8 HOH HOH . 
C 3 HOH A 33 190 9 HOH HOH . 
C 3 HOH A 34 191 10 HOH HOH . 
C 3 HOH A 35 192 11 HOH HOH . 
C 3 HOH A 36 193 12 HOH HOH . 
C 3 HOH A 37 194 13 HOH HOH . 
C 3 HOH A 38 195 14 HOH HOH . 
C 3 HOH A 39 196 15 HOH HOH . 
C 3 HOH A 40 197 16 HOH HOH . 
C 3 HOH A 41 198 17 HOH HOH . 
C 3 HOH A 42 199 18 HOH HOH . 
C 3 HOH A 43 200 19 HOH HOH . 
C 3 HOH A 44 201 20 HOH HOH . 
C 3 HOH A 45 203 21 HOH HOH . 
C 3 HOH A 46 204 22 HOH HOH . 
C 3 HOH A 47 205 23 HOH HOH . 
C 3 HOH A 48 206 24 HOH HOH . 
C 3 HOH A 49 207 25 HOH HOH . 
C 3 HOH A 50 208 26 HOH HOH . 
C 3 HOH A 51 209 27 HOH HOH . 
C 3 HOH A 52 210 28 HOH HOH . 
C 3 HOH A 53 211 29 HOH HOH . 
C 3 HOH A 54 212 30 HOH HOH . 
C 3 HOH A 55 213 31 HOH HOH . 
C 3 HOH A 56 214 32 HOH HOH . 
C 3 HOH A 57 215 33 HOH HOH . 
C 3 HOH A 58 216 34 HOH HOH . 
C 3 HOH A 59 217 35 HOH HOH . 
C 3 HOH A 60 218 36 HOH HOH . 
C 3 HOH A 61 219 37 HOH HOH . 
C 3 HOH A 62 220 38 HOH HOH . 
C 3 HOH A 63 221 39 HOH HOH . 
C 3 HOH A 64 222 40 HOH HOH . 
C 3 HOH A 65 223 41 HOH HOH . 
C 3 HOH A 66 224 42 HOH HOH . 
C 3 HOH A 67 225 43 HOH HOH . 
C 3 HOH A 68 226 44 HOH HOH . 
C 3 HOH A 69 227 45 HOH HOH . 
C 3 HOH A 70 228 46 HOH HOH . 
C 3 HOH A 71 229 47 HOH HOH . 
C 3 HOH A 72 230 48 HOH HOH . 
C 3 HOH A 73 231 49 HOH HOH . 
C 3 HOH A 74 232 50 HOH HOH . 
C 3 HOH A 75 233 51 HOH HOH . 
C 3 HOH A 76 234 52 HOH HOH . 
C 3 HOH A 77 235 53 HOH HOH . 
C 3 HOH A 78 236 54 HOH HOH . 
C 3 HOH A 79 237 55 HOH HOH . 
C 3 HOH A 80 238 56 HOH HOH . 
C 3 HOH A 81 239 57 HOH HOH . 
C 3 HOH A 82 240 58 HOH HOH . 
C 3 HOH A 83 241 59 HOH HOH . 
C 3 HOH A 84 242 60 HOH HOH . 
C 3 HOH A 85 243 61 HOH HOH . 
C 3 HOH A 86 244 62 HOH HOH . 
C 3 HOH A 87 245 63 HOH HOH . 
C 3 HOH A 88 246 64 HOH HOH . 
C 3 HOH A 89 247 65 HOH HOH . 
C 3 HOH A 90 248 66 HOH HOH . 
C 3 HOH A 91 249 67 HOH HOH . 
C 3 HOH A 92 250 68 HOH HOH . 
C 3 HOH A 93 251 69 HOH HOH . 
C 3 HOH A 94 252 70 HOH HOH . 
C 3 HOH A 95 253 71 HOH HOH . 
C 3 HOH A 96 254 72 HOH HOH . 
C 3 HOH A 97 255 73 HOH HOH . 
C 3 HOH A 98 256 74 HOH HOH . 
C 3 HOH A 99 257 75 HOH HOH . 
C 3 HOH A 100 258 76 HOH HOH . 
C 3 HOH A 101 259 77 HOH HOH . 
C 3 HOH A 102 260 78 HOH HOH . 
C 3 HOH A 103 261 79 HOH HOH . 
C 3 HOH A 104 262 80 HOH HOH . 
C 3 HOH A 105 263 81 HOH HOH . 
C 3 HOH A 106 264 82 HOH HOH . 
C 3 HOH A 107 265 83 HOH HOH . 
C 3 HOH A 108 266 84 HOH HOH . 
C 3 HOH A 109 267 85 HOH HOH . 
C 3 HOH A 110 268 86 HOH HOH . 
C 3 HOH A 111 269 87 HOH HOH . 
C 3 HOH A 112 270 88 HOH HOH . 
C 3 HOH A 113 271 89 HOH HOH . 
C 3 HOH A 114 272 90 HOH HOH . 
C 3 HOH A 115 273 91 HOH HOH . 
C 3 HOH A 116 274 92 HOH HOH . 
C 3 HOH A 117 275 93 HOH HOH . 
C 3 HOH A 118 276 94 HOH HOH . 
C 3 HOH A 119 277 95 HOH HOH . 
C 3 HOH A 120 278 96 HOH HOH . 
C 3 HOH A 121 279 97 HOH HOH . 
C 3 HOH A 122 280 98 HOH HOH . 
C 3 HOH A 123 281 99 HOH HOH . 
C 3 HOH A 124 282 100 HOH HOH . 
C 3 HOH A 125 283 101 HOH HOH . 
C 3 HOH A 126 284 102 HOH HOH . 
C 3 HOH A 127 285 103 HOH HOH . 
C 3 HOH A 128 286 104 HOH HOH . 
C 3 HOH A 129 287 105 HOH HOH . 
C 3 HOH A 130 288 106 HOH HOH . 
C 3 HOH A 131 289 107 HOH HOH . 
C 3 HOH A 132 290 108 HOH HOH . 
C 3 HOH A 133 291 109 HOH HOH . 
C 3 HOH A 134 292 110 HOH HOH . 
C 3 HOH A 135 293 111 HOH HOH . 
C 3 HOH A 136 294 112 HOH HOH . 
C 3 HOH A 137 295 113 HOH HOH . 
C 3 HOH A 138 296 114 HOH HOH . 
C 3 HOH A 139 297 115 HOH HOH . 
C 3 HOH A 140 298 116 HOH HOH . 
C 3 HOH A 141 299 117 HOH HOH . 
C 3 HOH A 142 300 118 HOH HOH . 
C 3 HOH A 143 301 119 HOH HOH . 
C 3 HOH A 144 302 120 HOH HOH . 
C 3 HOH A 145 303 121 HOH HOH . 
C 3 HOH A 146 304 122 HOH HOH . 
C 3 HOH A 147 305 123 HOH HOH . 
C 3 HOH A 148 306 124 HOH HOH . 
C 3 HOH A 149 307 125 HOH HOH . 
C 3 HOH A 150 308 126 HOH HOH . 
C 3 HOH A 151 309 127 HOH HOH . 
C 3 HOH A 152 310 128 HOH HOH . 
C 3 HOH A 153 311 129 HOH HOH . 
C 3 HOH A 154 312 130 HOH HOH . 
C 3 HOH A 155 313 131 HOH HOH . 
C 3 HOH A 156 314 132 HOH HOH . 
C 3 HOH A 157 315 133 HOH HOH . 
C 3 HOH A 158 316 134 HOH HOH . 
C 3 HOH A 159 317 135 HOH HOH . 
C 3 HOH A 160 318 136 HOH HOH . 
C 3 HOH A 161 319 137 HOH HOH . 
C 3 HOH A 162 320 138 HOH HOH . 
C 3 HOH A 163 321 139 HOH HOH . 
C 3 HOH A 164 322 140 HOH HOH . 
C 3 HOH A 165 323 141 HOH HOH . 
C 3 HOH A 166 324 142 HOH HOH . 
C 3 HOH A 167 325 143 HOH HOH . 
C 3 HOH A 168 326 144 HOH HOH . 
C 3 HOH A 169 327 145 HOH HOH . 
C 3 HOH A 170 328 146 HOH HOH . 
C 3 HOH A 171 329 147 HOH HOH . 
C 3 HOH A 172 330 148 HOH HOH . 
C 3 HOH A 173 331 149 HOH HOH . 
C 3 HOH A 174 332 150 HOH HOH . 
C 3 HOH A 175 333 151 HOH HOH . 
C 3 HOH A 176 334 152 HOH HOH . 
C 3 HOH A 177 335 153 HOH HOH . 
C 3 HOH A 178 336 154 HOH HOH . 
C 3 HOH A 179 337 155 HOH HOH . 
C 3 HOH A 180 338 156 HOH HOH . 
C 3 HOH A 181 339 157 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . B 2 32.85 -8.112 -4.197 1 31.42 ? C1 EDO 202 A 1 
HETATM 2 O O1 EDO . . . B 2 34.12 -7.785 -4.777 1 36.44 ? O1 EDO 202 A 1 
HETATM 3 C C2 EDO . . . B 2 32.086 -9.096 -5.094 1 27.29 ? C2 EDO 202 A 1 
HETATM 4 O O2 EDO . . . B 2 30.958 -8.547 -5.767 1 30.34 ? O2 EDO 202 A 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#