data_3MDZ # _model_server_result.job_id h2kyAA5bH-0xmGTukWeO9Q _model_server_result.datetime_utc '2024-12-22 06:21:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mdz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":265}' # _entry.id 3MDZ # _exptl.entry_id 3MDZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MDZ _cell.length_a 69.71 _cell.length_b 97.746 _cell.length_c 82.443 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MDZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 115 A HIS 96 1_555 B ZN ZN . A ZN 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc2 A NE2 HIS 117 A HIS 98 1_555 B ZN ZN . A ZN 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc3 A ND1 HIS 140 A HIS 121 1_555 B ZN ZN . A ZN 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc4 B ZN ZN . A ZN 263 1_555 C N1 EZL . A EZL 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 156 n n C1 C2 GOL sing 157 n n C1 H11 GOL sing 158 n n C1 H12 GOL sing 159 n n O1 HO1 GOL sing 160 n n C2 O2 GOL sing 161 n n C2 C3 GOL sing 162 n n C2 H2 GOL sing 163 n n O2 HO2 GOL sing 164 n n C3 O3 GOL sing 165 n n C3 H31 GOL sing 166 n n C3 H32 GOL sing 167 n n O3 HO3 GOL sing 168 n n # _atom_sites.entry_id 3MDZ _atom_sites.fract_transf_matrix[1][1] 0.014345 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010231 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01213 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 263 1 ZN ZN . C 3 EZL A 1 264 2 EZL RES . D 4 GOL A 1 265 3 GOL GOL . E 4 GOL A 1 266 1 GOL GOL . F 4 GOL A 1 267 1 GOL GOL . G 5 HOH A 1 268 2 HOH HOH . G 5 HOH A 2 269 3 HOH HOH . G 5 HOH A 3 270 4 HOH HOH . G 5 HOH A 4 271 5 HOH HOH . G 5 HOH A 5 272 7 HOH HOH . G 5 HOH A 6 273 8 HOH HOH . G 5 HOH A 7 274 11 HOH HOH . G 5 HOH A 8 275 12 HOH HOH . G 5 HOH A 9 276 13 HOH HOH . G 5 HOH A 10 277 14 HOH HOH . G 5 HOH A 11 278 17 HOH HOH . G 5 HOH A 12 279 18 HOH HOH . G 5 HOH A 13 280 19 HOH HOH . G 5 HOH A 14 281 20 HOH HOH . G 5 HOH A 15 282 21 HOH HOH . G 5 HOH A 16 283 22 HOH HOH . G 5 HOH A 17 284 23 HOH HOH . G 5 HOH A 18 285 24 HOH HOH . G 5 HOH A 19 286 25 HOH HOH . G 5 HOH A 20 287 27 HOH HOH . G 5 HOH A 21 288 32 HOH HOH . G 5 HOH A 22 289 33 HOH HOH . G 5 HOH A 23 290 34 HOH HOH . G 5 HOH A 24 291 36 HOH HOH . G 5 HOH A 25 292 37 HOH HOH . G 5 HOH A 26 293 38 HOH HOH . G 5 HOH A 27 294 39 HOH HOH . G 5 HOH A 28 295 40 HOH HOH . G 5 HOH A 29 296 41 HOH HOH . G 5 HOH A 30 297 42 HOH HOH . G 5 HOH A 31 298 43 HOH HOH . G 5 HOH A 32 299 44 HOH HOH . G 5 HOH A 33 300 45 HOH HOH . G 5 HOH A 34 301 46 HOH HOH . G 5 HOH A 35 302 47 HOH HOH . G 5 HOH A 36 303 48 HOH HOH . G 5 HOH A 37 304 49 HOH HOH . G 5 HOH A 38 305 50 HOH HOH . G 5 HOH A 39 306 51 HOH HOH . G 5 HOH A 40 307 52 HOH HOH . G 5 HOH A 41 308 53 HOH HOH . G 5 HOH A 42 309 54 HOH HOH . G 5 HOH A 43 310 55 HOH HOH . G 5 HOH A 44 311 56 HOH HOH . G 5 HOH A 45 312 57 HOH HOH . G 5 HOH A 46 313 58 HOH HOH . G 5 HOH A 47 314 59 HOH HOH . G 5 HOH A 48 315 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 34.124 16.847 72.196 1 59.14 ? C1 GOL 265 A 1 HETATM 2 O O1 GOL . . . D 4 33.569 16.736 73.477 1 56.75 ? O1 GOL 265 A 1 HETATM 3 C C2 GOL . . . D 4 34.347 15.465 71.623 1 61.53 ? C2 GOL 265 A 1 HETATM 4 O O2 GOL . . . D 4 34.794 15.482 70.262 1 61.41 ? O2 GOL 265 A 1 HETATM 5 C C3 GOL . . . D 4 35.309 14.725 72.545 1 62.67 ? C3 GOL 265 A 1 HETATM 6 O O3 GOL . . . D 4 36.578 15.337 72.409 1 65.16 ? O3 GOL 265 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #