data_3ME6
#
_model_server_result.job_id            z_WBkDGHxbSzGJto4dMjjg 
_model_server_result.datetime_utc      '2024-11-04 22:54:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3me6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":501}' 
#
_entry.id    3ME6 
#
_exptl.entry_id    3ME6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              321.822 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Clopidogrel 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3ME6 
_cell.length_a            234.49 
_cell.length_b            234.49 
_cell.length_c            57.32 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ME6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        143 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,M 1 1 
B,G,H,N 2 1 
C,I,J,O 3 1 
D,K,L,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 417 A CYS 436 1_555 E FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc2 B SG CYS 417 B CYS 436 1_555 G FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc3 C SG CYS 417 C CYS 436 1_555 I FE HEM . C HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? 
metalc ? metalc4 D SG CYS 417 D CYS 436 1_555 K FE HEM . D HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
#
_chem_comp.formula           'C16 H16 Cl N O2 S' 
_chem_comp.formula_weight    321.822 
_chem_comp.id                CGE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Clopidogrel 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'methyl (2S)-(2-chlorophenyl)(6,7-dihydrothieno[3,2-c]pyridin-5(4H)-yl)ethanoate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O CGE doub 70 n n 
C CA CGE sing 71 n n 
C OAM CGE sing 72 n n 
N CA CGE sing 73 n n 
N CAK CGE sing 74 n n 
N CAL CGE sing 75 n n 
CL1 CAP CGE sing 76 n n 
CA CAS CGE sing 77 n n 
CAA OAM CGE sing 78 n n 
CAD CAE CGE doub 79 n y 
CAD CAG CGE sing 80 n y 
CAE CAH CGE sing 81 n y 
CAF CAI CGE doub 82 n y 
CAF SAN CGE sing 83 n y 
CAG CAP CGE doub 84 n y 
CAH CAS CGE doub 85 n y 
CAI CAQ CGE sing 86 n y 
CAJ CAK CGE sing 87 n n 
CAJ CAR CGE sing 88 n n 
CAL CAQ CGE sing 89 n n 
SAN CAR CGE sing 90 n y 
CAP CAS CGE sing 91 n y 
CAQ CAR CGE doub 92 n y 
CA HA CGE sing 93 n n 
CAA HAA CGE sing 94 n n 
CAA HAAA CGE sing 95 n n 
CAA HAAB CGE sing 96 n n 
CAD HAD CGE sing 97 n n 
CAE HAE CGE sing 98 n n 
CAF HAF CGE sing 99 n n 
CAG HAG CGE sing 100 n n 
CAH HAH CGE sing 101 n n 
CAI HAI CGE sing 102 n n 
CAJ HAJ CGE sing 103 n n 
CAJ HAJA CGE sing 104 n n 
CAK HAK CGE sing 105 n n 
CAK HAKA CGE sing 106 n n 
CAL HAL CGE sing 107 n n 
CAL HALA CGE sing 108 n n 
#
_atom_sites.entry_id                     3ME6 
_atom_sites.fract_transf_matrix[1][1]    0.004265 
_atom_sites.fract_transf_matrix[1][2]    0.002462 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004924 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017446 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 500 500 HEM HEM . 
F 3 CGE A 1 501 501 CGE CGE . 
G 2 HEM B 1 500 500 HEM HEM . 
H 3 CGE B 1 501 501 CGE CGE . 
I 2 HEM C 1 500 500 HEM HEM . 
J 3 CGE C 1 501 501 CGE CGE . 
K 2 HEM D 1 500 500 HEM HEM . 
L 3 CGE D 1 501 501 CGE CGE . 
M 4 HOH A 1 1001 1001 HOH HOH . 
M 4 HOH A 2 1007 1007 HOH HOH . 
M 4 HOH A 3 1009 1009 HOH HOH . 
M 4 HOH A 4 1011 1011 HOH HOH . 
M 4 HOH A 5 1024 1024 HOH HOH . 
M 4 HOH A 6 1025 1025 HOH HOH . 
M 4 HOH A 7 1027 1027 HOH HOH . 
M 4 HOH A 8 1028 1028 HOH HOH . 
M 4 HOH A 9 1029 1029 HOH HOH . 
M 4 HOH A 10 1030 1030 HOH HOH . 
M 4 HOH A 11 1032 1032 HOH HOH . 
M 4 HOH A 12 1033 1033 HOH HOH . 
M 4 HOH A 13 1034 1034 HOH HOH . 
M 4 HOH A 14 1041 1041 HOH HOH . 
M 4 HOH A 15 1060 1060 HOH HOH . 
M 4 HOH A 16 1061 1061 HOH HOH . 
M 4 HOH A 17 1062 1062 HOH HOH . 
M 4 HOH A 18 1064 1064 HOH HOH . 
M 4 HOH A 19 1065 1065 HOH HOH . 
M 4 HOH A 20 1068 1068 HOH HOH . 
M 4 HOH A 21 1070 1070 HOH HOH . 
M 4 HOH A 22 1071 1071 HOH HOH . 
M 4 HOH A 23 1093 1093 HOH HOH . 
M 4 HOH A 24 1129 1129 HOH HOH . 
M 4 HOH A 25 1130 1130 HOH HOH . 
M 4 HOH A 26 1135 1135 HOH HOH . 
M 4 HOH A 27 1137 1137 HOH HOH . 
M 4 HOH A 28 1142 1142 HOH HOH . 
M 4 HOH A 29 1144 1144 HOH HOH . 
M 4 HOH A 30 1147 1147 HOH HOH . 
N 4 HOH B 1 1002 1002 HOH HOH . 
N 4 HOH B 2 1006 1006 HOH HOH . 
N 4 HOH B 3 1010 1010 HOH HOH . 
N 4 HOH B 4 1013 1013 HOH HOH . 
N 4 HOH B 5 1015 1015 HOH HOH . 
N 4 HOH B 6 1023 1023 HOH HOH . 
N 4 HOH B 7 1031 1031 HOH HOH . 
N 4 HOH B 8 1035 1035 HOH HOH . 
N 4 HOH B 9 1036 1036 HOH HOH . 
N 4 HOH B 10 1037 1037 HOH HOH . 
N 4 HOH B 11 1038 1038 HOH HOH . 
N 4 HOH B 12 1039 1039 HOH HOH . 
N 4 HOH B 13 1040 1040 HOH HOH . 
N 4 HOH B 14 1042 1042 HOH HOH . 
N 4 HOH B 15 1067 1067 HOH HOH . 
N 4 HOH B 16 1072 1072 HOH HOH . 
N 4 HOH B 17 1073 1073 HOH HOH . 
N 4 HOH B 18 1074 1074 HOH HOH . 
N 4 HOH B 19 1075 1075 HOH HOH . 
N 4 HOH B 20 1077 1077 HOH HOH . 
N 4 HOH B 21 1078 1078 HOH HOH . 
N 4 HOH B 22 1079 1079 HOH HOH . 
N 4 HOH B 23 1082 1082 HOH HOH . 
N 4 HOH B 24 1083 1083 HOH HOH . 
N 4 HOH B 25 1084 1084 HOH HOH . 
N 4 HOH B 26 1085 1085 HOH HOH . 
N 4 HOH B 27 1094 1094 HOH HOH . 
N 4 HOH B 28 1125 1125 HOH HOH . 
N 4 HOH B 29 1145 1145 HOH HOH . 
N 4 HOH B 30 1149 1149 HOH HOH . 
N 4 HOH B 31 1151 1151 HOH HOH . 
N 4 HOH B 32 1154 1154 HOH HOH . 
N 4 HOH B 33 1157 1157 HOH HOH . 
N 4 HOH B 34 1158 1158 HOH HOH . 
N 4 HOH B 35 1159 1159 HOH HOH . 
O 4 HOH C 1 1005 1005 HOH HOH . 
O 4 HOH C 2 1008 1008 HOH HOH . 
O 4 HOH C 3 1018 1018 HOH HOH . 
O 4 HOH C 4 1019 1019 HOH HOH . 
O 4 HOH C 5 1021 1021 HOH HOH . 
O 4 HOH C 6 1043 1043 HOH HOH . 
O 4 HOH C 7 1044 1044 HOH HOH . 
O 4 HOH C 8 1045 1045 HOH HOH . 
O 4 HOH C 9 1046 1046 HOH HOH . 
O 4 HOH C 10 1047 1047 HOH HOH . 
O 4 HOH C 11 1048 1048 HOH HOH . 
O 4 HOH C 12 1049 1049 HOH HOH . 
O 4 HOH C 13 1050 1050 HOH HOH . 
O 4 HOH C 14 1051 1051 HOH HOH . 
O 4 HOH C 15 1052 1052 HOH HOH . 
O 4 HOH C 16 1053 1053 HOH HOH . 
O 4 HOH C 17 1063 1063 HOH HOH . 
O 4 HOH C 18 1089 1089 HOH HOH . 
O 4 HOH C 19 1090 1090 HOH HOH . 
O 4 HOH C 20 1092 1092 HOH HOH . 
O 4 HOH C 21 1096 1096 HOH HOH . 
O 4 HOH C 22 1098 1098 HOH HOH . 
O 4 HOH C 23 1099 1099 HOH HOH . 
O 4 HOH C 24 1102 1102 HOH HOH . 
O 4 HOH C 25 1115 1115 HOH HOH . 
O 4 HOH C 26 1121 1121 HOH HOH . 
O 4 HOH C 27 1123 1123 HOH HOH . 
O 4 HOH C 28 1160 1160 HOH HOH . 
O 4 HOH C 29 1162 1162 HOH HOH . 
O 4 HOH C 30 1163 1163 HOH HOH . 
O 4 HOH C 31 1165 1165 HOH HOH . 
O 4 HOH C 32 1166 1166 HOH HOH . 
P 4 HOH D 1 1003 1003 HOH HOH . 
P 4 HOH D 2 1004 1004 HOH HOH . 
P 4 HOH D 3 1012 1012 HOH HOH . 
P 4 HOH D 4 1014 1014 HOH HOH . 
P 4 HOH D 5 1017 1017 HOH HOH . 
P 4 HOH D 6 1020 1020 HOH HOH . 
P 4 HOH D 7 1022 1022 HOH HOH . 
P 4 HOH D 8 1054 1054 HOH HOH . 
P 4 HOH D 9 1055 1055 HOH HOH . 
P 4 HOH D 10 1056 1056 HOH HOH . 
P 4 HOH D 11 1057 1057 HOH HOH . 
P 4 HOH D 12 1058 1058 HOH HOH . 
P 4 HOH D 13 1059 1059 HOH HOH . 
P 4 HOH D 14 1095 1095 HOH HOH . 
P 4 HOH D 15 1100 1100 HOH HOH . 
P 4 HOH D 16 1103 1103 HOH HOH . 
P 4 HOH D 17 1104 1104 HOH HOH . 
P 4 HOH D 18 1106 1106 HOH HOH . 
P 4 HOH D 19 1107 1107 HOH HOH . 
P 4 HOH D 20 1109 1109 HOH HOH . 
P 4 HOH D 21 1110 1110 HOH HOH . 
P 4 HOH D 22 1111 1111 HOH HOH . 
P 4 HOH D 23 1112 1112 HOH HOH . 
P 4 HOH D 24 1113 1113 HOH HOH . 
P 4 HOH D 25 1117 1117 HOH HOH . 
P 4 HOH D 26 1118 1118 HOH HOH . 
P 4 HOH D 27 1120 1120 HOH HOH . 
P 4 HOH D 28 1126 1126 HOH HOH . 
P 4 HOH D 29 1168 1168 HOH HOH . 
P 4 HOH D 30 1169 1169 HOH HOH . 
P 4 HOH D 31 1170 1170 HOH HOH . 
P 4 HOH D 32 1171 1171 HOH HOH . 
P 4 HOH D 33 1172 1172 HOH HOH . 
P 4 HOH D 34 1173 1173 HOH HOH . 
P 4 HOH D 35 1176 1176 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C CGE . . . L 3 -97.917 22.938 -30.478 1 111.15 ? C CGE 501 D 1 
HETATM 2 N N CGE . . . L 3 -99.51 24.683 -31.475 1 111.18 ? N CGE 501 D 1 
HETATM 3 O O CGE . . . L 3 -97.042 23.6 -29.932 1 111.24 ? O CGE 501 D 1 
HETATM 4 CL CL1 CGE . . . L 3 -99.901 21.797 -33.527 1 111.96 ? CL1 CGE 501 D 1 
HETATM 5 C CA CGE . . . L 3 -98.708 23.474 -31.661 1 111.18 ? CA CGE 501 D 1 
HETATM 6 C CAA CGE . . . L 3 -99.028 20.647 -30.634 1 110.64 ? CAA CGE 501 D 1 
HETATM 7 C CAD CGE . . . L 3 -96.67 23.532 -35.351 1 111.75 ? CAD CGE 501 D 1 
HETATM 8 C CAE CGE . . . L 3 -96.163 24.344 -34.336 1 111.48 ? CAE CGE 501 D 1 
HETATM 9 C CAF CGE . . . L 3 -104.046 24.625 -31.87 1 108.46 ? CAF CGE 501 D 1 
HETATM 10 C CAG CGE . . . L 3 -97.804 22.734 -35.163 1 111.44 ? CAG CGE 501 D 1 
HETATM 11 C CAH CGE . . . L 3 -96.81 24.357 -33.104 1 111.31 ? CAH CGE 501 D 1 
HETATM 12 C CAI CGE . . . L 3 -103.097 24.347 -30.902 1 108.86 ? CAI CGE 501 D 1 
HETATM 13 C CAJ CGE . . . L 3 -100.517 25.87 -33.334 1 110.54 ? CAJ CGE 501 D 1 
HETATM 14 C CAK CGE . . . L 3 -99.319 25.845 -32.368 1 111.05 ? CAK CGE 501 D 1 
HETATM 15 C CAL CGE . . . L 3 -100.537 24.571 -30.435 1 111.36 ? CAL CGE 501 D 1 
HETATM 16 O OAM CGE . . . L 3 -98.194 21.595 -29.957 1 111.15 ? OAM CGE 501 D 1 
HETATM 17 S SAN CGE . . . L 3 -103.26 25.359 -33.221 1 108.89 ? SAN CGE 501 D 1 
HETATM 18 C CAP CGE . . . L 3 -98.436 22.757 -33.924 1 111.24 ? CAP CGE 501 D 1 
HETATM 19 C CAQ CGE . . . L 3 -101.797 24.717 -31.235 1 110.32 ? CAQ CGE 501 D 1 
HETATM 20 C CAR CGE . . . L 3 -101.696 25.329 -32.567 1 109.84 ? CAR CGE 501 D 1 
HETATM 21 C CAS CGE . . . L 3 -97.935 23.548 -32.918 1 111.18 ? CAS CGE 501 D 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#