data_3MEC # _model_server_result.job_id J9of6d1EHt1FgkbEIzPkkw _model_server_result.datetime_utc '2024-11-04 23:07:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mec # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":561}' # _entry.id 3MEC # _exptl.entry_id 3MEC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 435.277 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-({6-AMINO-5-BROMO-2-[(4-CYANOPHENYL)AMINO]PYRIMIDIN-4-YL}OXY)-3,5-DIMETHYLBENZONITRILE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MEC _cell.length_a 118.947 _cell.length_b 154.122 _cell.length_c 154.769 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MEC _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H15 Br N6 O' _chem_comp.formula_weight 435.277 _chem_comp.id 65B _chem_comp.mon_nstd_flag . _chem_comp.name 4-({6-AMINO-5-BROMO-2-[(4-CYANOPHENYL)AMINO]PYRIMIDIN-4-YL}OXY)-3,5-DIMETHYLBENZONITRILE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Etravine;Etravirine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O17 65B sing 1 n n C1 C2 65B sing 2 n y C1 C6 65B doub 3 n y O17 C13 65B sing 4 n n C2 C2' 65B sing 5 n n C2 C3 65B doub 6 n y C2' "H2'1" 65B sing 7 n n C2' "H2'2" 65B sing 8 n n C2' "H2'3" 65B sing 9 n n C3 C4 65B sing 10 n y C3 H3 65B sing 11 n n C4 C5 65B doub 12 n y C4 C4' 65B sing 13 n n C5 C6 65B sing 14 n y C5 H5 65B sing 15 n n C6 C6' 65B sing 16 n n C6' "H6'1" 65B sing 17 n n C6' "H6'2" 65B sing 18 n n C6' "H6'3" 65B sing 19 n n C13 N12 65B sing 20 n y C13 C14 65B doub 21 n y N12 C11 65B doub 22 n y C11 N5 65B sing 23 n n C11 N16 65B sing 24 n y N5 C21 65B sing 25 n n N5 HN5 65B sing 26 n n N16 C15 65B doub 27 n y C15 N18 65B sing 28 n n C15 C14 65B sing 29 n y N18 H181 65B sing 30 n n N18 H182 65B sing 31 n n C14 BR 65B sing 32 n n C21 C22 65B sing 33 n y C21 C26 65B doub 34 n y C22 C23 65B doub 35 n y C22 H22 65B sing 36 n n C23 C24 65B sing 37 n y C23 H23 65B sing 38 n n C24 C25 65B doub 39 n y C24 C27 65B sing 40 n n C25 C26 65B sing 41 n y C25 H25 65B sing 42 n n C26 H26 65B sing 43 n n C27 N27 65B trip 44 n n C4' N4' 65B trip 45 n n # _atom_sites.entry_id 3MEC _atom_sites.fract_transf_matrix[1][1] 0.008407 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006461 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 65B A 1 561 1 65B 65B . D 4 SO4 A 1 562 201 SO4 SO4 . E 4 SO4 A 1 563 202 SO4 SO4 . F 4 SO4 A 1 564 203 SO4 SO4 . G 4 SO4 A 1 565 204 SO4 SO4 . H 4 SO4 B 1 441 205 SO4 SO4 . I 5 HOH A 1 566 1 HOH HOH . I 5 HOH A 2 567 2 HOH HOH . I 5 HOH A 3 568 4 HOH HOH . I 5 HOH A 4 569 6 HOH HOH . I 5 HOH A 5 570 7 HOH HOH . I 5 HOH A 6 571 8 HOH HOH . I 5 HOH A 7 572 9 HOH HOH . I 5 HOH A 8 573 10 HOH HOH . I 5 HOH A 9 574 13 HOH HOH . I 5 HOH A 10 575 14 HOH HOH . I 5 HOH A 11 576 15 HOH HOH . I 5 HOH A 12 577 17 HOH HOH . I 5 HOH A 13 578 18 HOH HOH . I 5 HOH A 14 579 20 HOH HOH . I 5 HOH A 15 580 26 HOH HOH . I 5 HOH A 16 581 27 HOH HOH . I 5 HOH A 17 582 28 HOH HOH . I 5 HOH A 18 583 29 HOH HOH . I 5 HOH A 19 584 31 HOH HOH . I 5 HOH A 20 585 32 HOH HOH . I 5 HOH A 21 586 33 HOH HOH . I 5 HOH A 22 587 34 HOH HOH . I 5 HOH A 23 588 35 HOH HOH . I 5 HOH A 24 589 37 HOH HOH . I 5 HOH A 25 590 38 HOH HOH . I 5 HOH A 26 591 39 HOH HOH . I 5 HOH A 27 592 41 HOH HOH . I 5 HOH A 28 593 42 HOH HOH . I 5 HOH A 29 594 43 HOH HOH . I 5 HOH A 30 595 44 HOH HOH . I 5 HOH A 31 596 49 HOH HOH . I 5 HOH A 32 597 50 HOH HOH . I 5 HOH A 33 598 51 HOH HOH . I 5 HOH A 34 599 53 HOH HOH . I 5 HOH A 35 600 54 HOH HOH . I 5 HOH A 36 601 59 HOH HOH . I 5 HOH A 37 602 61 HOH HOH . I 5 HOH A 38 603 62 HOH HOH . I 5 HOH A 39 604 63 HOH HOH . I 5 HOH A 40 605 68 HOH HOH . I 5 HOH A 41 606 69 HOH HOH . I 5 HOH A 42 607 70 HOH HOH . I 5 HOH A 43 608 72 HOH HOH . I 5 HOH A 44 609 75 HOH HOH . I 5 HOH A 45 610 77 HOH HOH . I 5 HOH A 46 611 79 HOH HOH . I 5 HOH A 47 612 80 HOH HOH . I 5 HOH A 48 613 81 HOH HOH . I 5 HOH A 49 614 82 HOH HOH . I 5 HOH A 50 615 83 HOH HOH . I 5 HOH A 51 616 89 HOH HOH . I 5 HOH A 52 617 90 HOH HOH . I 5 HOH A 53 618 91 HOH HOH . I 5 HOH A 54 619 95 HOH HOH . I 5 HOH A 55 620 96 HOH HOH . I 5 HOH A 56 621 97 HOH HOH . I 5 HOH A 57 622 98 HOH HOH . I 5 HOH A 58 623 99 HOH HOH . I 5 HOH A 59 624 100 HOH HOH . I 5 HOH A 60 625 102 HOH HOH . I 5 HOH A 61 626 103 HOH HOH . I 5 HOH A 62 627 104 HOH HOH . I 5 HOH A 63 628 106 HOH HOH . I 5 HOH A 64 629 107 HOH HOH . I 5 HOH A 65 630 109 HOH HOH . I 5 HOH A 66 631 110 HOH HOH . I 5 HOH A 67 632 111 HOH HOH . I 5 HOH A 68 633 112 HOH HOH . I 5 HOH A 69 634 116 HOH HOH . I 5 HOH A 70 635 118 HOH HOH . I 5 HOH A 71 636 119 HOH HOH . I 5 HOH A 72 637 121 HOH HOH . I 5 HOH A 73 638 122 HOH HOH . I 5 HOH A 74 639 127 HOH HOH . I 5 HOH A 75 640 128 HOH HOH . I 5 HOH A 76 641 131 HOH HOH . I 5 HOH A 77 642 132 HOH HOH . I 5 HOH A 78 643 135 HOH HOH . I 5 HOH A 79 644 137 HOH HOH . I 5 HOH A 80 645 138 HOH HOH . I 5 HOH A 81 646 143 HOH HOH . I 5 HOH A 82 647 144 HOH HOH . I 5 HOH A 83 648 145 HOH HOH . I 5 HOH A 84 649 146 HOH HOH . I 5 HOH A 85 650 148 HOH HOH . I 5 HOH A 86 651 149 HOH HOH . I 5 HOH A 87 652 151 HOH HOH . I 5 HOH A 88 653 152 HOH HOH . I 5 HOH A 89 654 153 HOH HOH . I 5 HOH A 90 655 154 HOH HOH . I 5 HOH A 91 656 155 HOH HOH . I 5 HOH A 92 657 157 HOH HOH . I 5 HOH A 93 658 161 HOH HOH . I 5 HOH A 94 659 165 HOH HOH . I 5 HOH A 95 660 166 HOH HOH . I 5 HOH A 96 661 169 HOH HOH . I 5 HOH A 97 662 170 HOH HOH . I 5 HOH A 98 663 171 HOH HOH . I 5 HOH A 99 664 172 HOH HOH . I 5 HOH A 100 665 173 HOH HOH . I 5 HOH A 101 666 174 HOH HOH . I 5 HOH A 102 667 175 HOH HOH . I 5 HOH A 103 668 176 HOH HOH . I 5 HOH A 104 669 182 HOH HOH . I 5 HOH A 105 670 183 HOH HOH . I 5 HOH A 106 671 185 HOH HOH . I 5 HOH A 107 672 187 HOH HOH . I 5 HOH A 108 673 189 HOH HOH . I 5 HOH A 109 674 190 HOH HOH . I 5 HOH A 110 675 193 HOH HOH . I 5 HOH A 111 676 194 HOH HOH . I 5 HOH A 112 677 195 HOH HOH . I 5 HOH A 113 678 196 HOH HOH . I 5 HOH A 114 679 198 HOH HOH . I 5 HOH A 115 680 200 HOH HOH . I 5 HOH A 116 681 201 HOH HOH . I 5 HOH A 117 682 202 HOH HOH . I 5 HOH A 118 683 203 HOH HOH . I 5 HOH A 119 684 204 HOH HOH . I 5 HOH A 120 685 207 HOH HOH . I 5 HOH A 121 686 208 HOH HOH . I 5 HOH A 122 687 209 HOH HOH . I 5 HOH A 123 688 210 HOH HOH . I 5 HOH A 124 689 212 HOH HOH . I 5 HOH A 125 690 213 HOH HOH . J 5 HOH B 1 442 3 HOH HOH . J 5 HOH B 2 443 5 HOH HOH . J 5 HOH B 3 444 11 HOH HOH . J 5 HOH B 4 445 12 HOH HOH . J 5 HOH B 5 446 16 HOH HOH . J 5 HOH B 6 447 19 HOH HOH . J 5 HOH B 7 448 21 HOH HOH . J 5 HOH B 8 449 22 HOH HOH . J 5 HOH B 9 450 23 HOH HOH . J 5 HOH B 10 451 24 HOH HOH . J 5 HOH B 11 452 25 HOH HOH . J 5 HOH B 12 453 30 HOH HOH . J 5 HOH B 13 454 36 HOH HOH . J 5 HOH B 14 455 40 HOH HOH . J 5 HOH B 15 456 45 HOH HOH . J 5 HOH B 16 457 46 HOH HOH . J 5 HOH B 17 458 47 HOH HOH . J 5 HOH B 18 459 48 HOH HOH . J 5 HOH B 19 460 52 HOH HOH . J 5 HOH B 20 461 55 HOH HOH . J 5 HOH B 21 462 56 HOH HOH . J 5 HOH B 22 463 57 HOH HOH . J 5 HOH B 23 464 58 HOH HOH . J 5 HOH B 24 465 60 HOH HOH . J 5 HOH B 25 466 64 HOH HOH . J 5 HOH B 26 467 65 HOH HOH . J 5 HOH B 27 468 66 HOH HOH . J 5 HOH B 28 469 67 HOH HOH . J 5 HOH B 29 470 71 HOH HOH . J 5 HOH B 30 471 73 HOH HOH . J 5 HOH B 31 472 74 HOH HOH . J 5 HOH B 32 473 76 HOH HOH . J 5 HOH B 33 474 78 HOH HOH . J 5 HOH B 34 475 84 HOH HOH . J 5 HOH B 35 476 85 HOH HOH . J 5 HOH B 36 477 86 HOH HOH . J 5 HOH B 37 478 87 HOH HOH . J 5 HOH B 38 479 88 HOH HOH . J 5 HOH B 39 480 92 HOH HOH . J 5 HOH B 40 481 93 HOH HOH . J 5 HOH B 41 482 94 HOH HOH . J 5 HOH B 42 483 101 HOH HOH . J 5 HOH B 43 484 105 HOH HOH . J 5 HOH B 44 485 108 HOH HOH . J 5 HOH B 45 486 113 HOH HOH . J 5 HOH B 46 487 114 HOH HOH . J 5 HOH B 47 488 115 HOH HOH . J 5 HOH B 48 489 117 HOH HOH . J 5 HOH B 49 490 120 HOH HOH . J 5 HOH B 50 491 123 HOH HOH . J 5 HOH B 51 492 124 HOH HOH . J 5 HOH B 52 493 125 HOH HOH . J 5 HOH B 53 494 126 HOH HOH . J 5 HOH B 54 495 129 HOH HOH . J 5 HOH B 55 496 130 HOH HOH . J 5 HOH B 56 497 133 HOH HOH . J 5 HOH B 57 498 134 HOH HOH . J 5 HOH B 58 499 136 HOH HOH . J 5 HOH B 59 500 139 HOH HOH . J 5 HOH B 60 501 140 HOH HOH . J 5 HOH B 61 502 141 HOH HOH . J 5 HOH B 62 503 142 HOH HOH . J 5 HOH B 63 504 147 HOH HOH . J 5 HOH B 64 505 150 HOH HOH . J 5 HOH B 65 506 156 HOH HOH . J 5 HOH B 66 507 158 HOH HOH . J 5 HOH B 67 508 159 HOH HOH . J 5 HOH B 68 509 160 HOH HOH . J 5 HOH B 69 510 162 HOH HOH . J 5 HOH B 70 511 163 HOH HOH . J 5 HOH B 71 512 164 HOH HOH . J 5 HOH B 72 513 167 HOH HOH . J 5 HOH B 73 514 168 HOH HOH . J 5 HOH B 74 515 177 HOH HOH . J 5 HOH B 75 516 178 HOH HOH . J 5 HOH B 76 517 179 HOH HOH . J 5 HOH B 77 518 180 HOH HOH . J 5 HOH B 78 519 181 HOH HOH . J 5 HOH B 79 520 184 HOH HOH . J 5 HOH B 80 521 186 HOH HOH . J 5 HOH B 81 522 188 HOH HOH . J 5 HOH B 82 523 191 HOH HOH . J 5 HOH B 83 524 192 HOH HOH . J 5 HOH B 84 525 197 HOH HOH . J 5 HOH B 85 526 199 HOH HOH . J 5 HOH B 86 527 205 HOH HOH . J 5 HOH B 87 528 206 HOH HOH . J 5 HOH B 88 529 211 HOH HOH . J 5 HOH B 89 530 214 HOH HOH . J 5 HOH B 90 531 215 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 65B . . . C 3 11.493 13.119 18.269 1 39.52 ? C1 65B 561 A 1 HETATM 2 O O17 65B . . . C 3 12.231 13.826 17.28 1 39.91 ? O17 65B 561 A 1 HETATM 3 C C2 65B . . . C 3 11.352 11.666 18.189 1 38.31 ? C2 65B 561 A 1 HETATM 4 C C2' 65B . . . C 3 11.993 10.865 17.052 1 37.36 ? C2' 65B 561 A 1 HETATM 5 C C3 65B . . . C 3 10.608 10.966 19.193 1 38.19 ? C3 65B 561 A 1 HETATM 6 C C4 65B . . . C 3 10.001 11.671 20.257 1 38.22 ? C4 65B 561 A 1 HETATM 7 C C5 65B . . . C 3 10.118 13.093 20.362 1 37.9 ? C5 65B 561 A 1 HETATM 8 C C6 65B . . . C 3 10.854 13.832 19.377 1 40.16 ? C6 65B 561 A 1 HETATM 9 C C6' 65B . . . C 3 10.962 15.369 19.52 1 40.26 ? C6' 65B 561 A 1 HETATM 10 C C13 65B . . . C 3 11.526 14.168 16.109 1 41.79 ? C13 65B 561 A 1 HETATM 11 N N12 65B . . . C 3 10.274 13.578 15.851 1 40.53 ? N12 65B 561 A 1 HETATM 12 C C11 65B . . . C 3 9.527 13.883 14.712 1 38.06 ? C11 65B 561 A 1 HETATM 13 N N5 65B . . . C 3 8.332 13.302 14.461 1 35.09 ? N5 65B 561 A 1 HETATM 14 N N16 65B . . . C 3 10.064 14.823 13.793 1 38.1 ? N16 65B 561 A 1 HETATM 15 C C15 65B . . . C 3 11.332 15.427 14.027 1 42.78 ? C15 65B 561 A 1 HETATM 16 N N18 65B . . . C 3 11.817 16.312 13.121 1 36.22 ? N18 65B 561 A 1 HETATM 17 C C14 65B . . . C 3 12.077 15.09 15.21 1 44.12 ? C14 65B 561 A 1 HETATM 18 C C21 65B . . . C 3 7.681 12.348 15.195 1 37.29 ? C21 65B 561 A 1 HETATM 19 C C22 65B . . . C 3 6.648 11.652 14.49 1 35.62 ? C22 65B 561 A 1 HETATM 20 C C23 65B . . . C 3 5.913 10.613 15.129 1 39.56 ? C23 65B 561 A 1 HETATM 21 C C24 65B . . . C 3 6.19 10.24 16.49 1 38.87 ? C24 65B 561 A 1 HETATM 22 C C25 65B . . . C 3 7.218 10.92 17.231 1 37.68 ? C25 65B 561 A 1 HETATM 23 C C26 65B . . . C 3 7.969 11.974 16.593 1 37.24 ? C26 65B 561 A 1 HETATM 24 C C27 65B . . . C 3 5.424 9.189 17.074 1 38.82 ? C27 65B 561 A 1 HETATM 25 N N27 65B . . . C 3 4.774 8.345 17.52 1 40.03 ? N27 65B 561 A 1 HETATM 26 C C4' 65B . . . C 3 9.279 10.949 21.237 1 38.12 ? C4' 65B 561 A 1 HETATM 27 N N4' 65B . . . C 3 8.718 10.374 22.048 1 39.24 ? N4' 65B 561 A 1 HETATM 28 BR BR 65B . . . C 3 13.739 15.838 15.581 1 70.32 ? BR 65B 561 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #