data_3MED
#
_model_server_result.job_id            I4Oc4QYdFLrI_iD4fxYlpg 
_model_server_result.datetime_utc      '2024-11-14 16:16:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3med 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":561}' 
#
_entry.id    3MED 
#
_exptl.entry_id    3MED 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              435.277 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-({6-AMINO-5-BROMO-2-[(4-CYANOPHENYL)AMINO]PYRIMIDIN-4-YL}OXY)-3,5-DIMETHYLBENZONITRILE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3MED 
_cell.length_a            119.598 
_cell.length_b            153.973 
_cell.length_c            153.445 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3MED 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H15 Br N6 O' 
_chem_comp.formula_weight    435.277 
_chem_comp.id                65B 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-({6-AMINO-5-BROMO-2-[(4-CYANOPHENYL)AMINO]PYRIMIDIN-4-YL}OXY)-3,5-DIMETHYLBENZONITRILE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Etravine;Etravirine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O17 65B sing 1 n n 
C1 C2 65B sing 2 n y 
C1 C6 65B doub 3 n y 
O17 C13 65B sing 4 n n 
C2 C2' 65B sing 5 n n 
C2 C3 65B doub 6 n y 
C2' "H2'1" 65B sing 7 n n 
C2' "H2'2" 65B sing 8 n n 
C2' "H2'3" 65B sing 9 n n 
C3 C4 65B sing 10 n y 
C3 H3 65B sing 11 n n 
C4 C5 65B doub 12 n y 
C4 C4' 65B sing 13 n n 
C5 C6 65B sing 14 n y 
C5 H5 65B sing 15 n n 
C6 C6' 65B sing 16 n n 
C6' "H6'1" 65B sing 17 n n 
C6' "H6'2" 65B sing 18 n n 
C6' "H6'3" 65B sing 19 n n 
C13 N12 65B sing 20 n y 
C13 C14 65B doub 21 n y 
N12 C11 65B doub 22 n y 
C11 N5 65B sing 23 n n 
C11 N16 65B sing 24 n y 
N5 C21 65B sing 25 n n 
N5 HN5 65B sing 26 n n 
N16 C15 65B doub 27 n y 
C15 N18 65B sing 28 n n 
C15 C14 65B sing 29 n y 
N18 H181 65B sing 30 n n 
N18 H182 65B sing 31 n n 
C14 BR 65B sing 32 n n 
C21 C22 65B sing 33 n y 
C21 C26 65B doub 34 n y 
C22 C23 65B doub 35 n y 
C22 H22 65B sing 36 n n 
C23 C24 65B sing 37 n y 
C23 H23 65B sing 38 n n 
C24 C25 65B doub 39 n y 
C24 C27 65B sing 40 n n 
C25 C26 65B sing 41 n y 
C25 H25 65B sing 42 n n 
C26 H26 65B sing 43 n n 
C27 N27 65B trip 44 n n 
C4' N4' 65B trip 45 n n 
#
_atom_sites.entry_id                     3MED 
_atom_sites.fract_transf_matrix[1][1]    0.008361 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006495 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006517 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 65B A 1 561 1 65B 65B . 
D 4 SO4 A 1 562 201 SO4 SO4 . 
E 4 SO4 A 1 563 202 SO4 SO4 . 
F 4 SO4 A 1 564 204 SO4 SO4 . 
G 4 SO4 B 1 441 203 SO4 SO4 . 
H 4 SO4 B 1 442 205 SO4 SO4 . 
I 4 SO4 B 1 443 206 SO4 SO4 . 
J 5 CL B 1 444 207 CL CL . 
K 6 HOH A 1 565 1 HOH HOH . 
K 6 HOH A 2 566 2 HOH HOH . 
K 6 HOH A 3 567 3 HOH HOH . 
K 6 HOH A 4 568 4 HOH HOH . 
K 6 HOH A 5 569 5 HOH HOH . 
K 6 HOH A 6 570 6 HOH HOH . 
K 6 HOH A 7 571 7 HOH HOH . 
K 6 HOH A 8 572 8 HOH HOH . 
K 6 HOH A 9 573 9 HOH HOH . 
K 6 HOH A 10 574 10 HOH HOH . 
K 6 HOH A 11 575 11 HOH HOH . 
K 6 HOH A 12 576 12 HOH HOH . 
K 6 HOH A 13 577 13 HOH HOH . 
K 6 HOH A 14 578 14 HOH HOH . 
K 6 HOH A 15 579 18 HOH HOH . 
K 6 HOH A 16 580 19 HOH HOH . 
K 6 HOH A 17 581 20 HOH HOH . 
K 6 HOH A 18 582 21 HOH HOH . 
K 6 HOH A 19 583 22 HOH HOH . 
K 6 HOH A 20 584 26 HOH HOH . 
K 6 HOH A 21 585 28 HOH HOH . 
K 6 HOH A 22 586 29 HOH HOH . 
K 6 HOH A 23 587 33 HOH HOH . 
K 6 HOH A 24 588 34 HOH HOH . 
K 6 HOH A 25 589 35 HOH HOH . 
K 6 HOH A 26 590 39 HOH HOH . 
K 6 HOH A 27 591 41 HOH HOH . 
K 6 HOH A 28 592 44 HOH HOH . 
K 6 HOH A 29 593 45 HOH HOH . 
K 6 HOH A 30 594 46 HOH HOH . 
K 6 HOH A 31 595 49 HOH HOH . 
K 6 HOH A 32 596 50 HOH HOH . 
K 6 HOH A 33 597 51 HOH HOH . 
K 6 HOH A 34 598 52 HOH HOH . 
K 6 HOH A 35 599 53 HOH HOH . 
K 6 HOH A 36 600 54 HOH HOH . 
K 6 HOH A 37 601 56 HOH HOH . 
K 6 HOH A 38 602 61 HOH HOH . 
K 6 HOH A 39 603 62 HOH HOH . 
K 6 HOH A 40 604 64 HOH HOH . 
K 6 HOH A 41 605 66 HOH HOH . 
K 6 HOH A 42 606 70 HOH HOH . 
K 6 HOH A 43 607 71 HOH HOH . 
K 6 HOH A 44 608 72 HOH HOH . 
K 6 HOH A 45 609 78 HOH HOH . 
K 6 HOH A 46 610 79 HOH HOH . 
K 6 HOH A 47 611 80 HOH HOH . 
K 6 HOH A 48 612 82 HOH HOH . 
K 6 HOH A 49 613 83 HOH HOH . 
K 6 HOH A 50 614 84 HOH HOH . 
K 6 HOH A 51 615 85 HOH HOH . 
K 6 HOH A 52 616 86 HOH HOH . 
K 6 HOH A 53 617 87 HOH HOH . 
K 6 HOH A 54 618 88 HOH HOH . 
K 6 HOH A 55 619 89 HOH HOH . 
L 6 HOH B 1 445 15 HOH HOH . 
L 6 HOH B 2 446 16 HOH HOH . 
L 6 HOH B 3 447 17 HOH HOH . 
L 6 HOH B 4 448 23 HOH HOH . 
L 6 HOH B 5 449 24 HOH HOH . 
L 6 HOH B 6 450 25 HOH HOH . 
L 6 HOH B 7 451 27 HOH HOH . 
L 6 HOH B 8 452 30 HOH HOH . 
L 6 HOH B 9 453 31 HOH HOH . 
L 6 HOH B 10 454 32 HOH HOH . 
L 6 HOH B 11 455 36 HOH HOH . 
L 6 HOH B 12 456 37 HOH HOH . 
L 6 HOH B 13 457 38 HOH HOH . 
L 6 HOH B 14 458 40 HOH HOH . 
L 6 HOH B 15 459 42 HOH HOH . 
L 6 HOH B 16 460 43 HOH HOH . 
L 6 HOH B 17 461 47 HOH HOH . 
L 6 HOH B 18 462 48 HOH HOH . 
L 6 HOH B 19 463 55 HOH HOH . 
L 6 HOH B 20 464 57 HOH HOH . 
L 6 HOH B 21 465 58 HOH HOH . 
L 6 HOH B 22 466 59 HOH HOH . 
L 6 HOH B 23 467 60 HOH HOH . 
L 6 HOH B 24 468 63 HOH HOH . 
L 6 HOH B 25 469 65 HOH HOH . 
L 6 HOH B 26 470 67 HOH HOH . 
L 6 HOH B 27 471 68 HOH HOH . 
L 6 HOH B 28 472 69 HOH HOH . 
L 6 HOH B 29 473 73 HOH HOH . 
L 6 HOH B 30 474 74 HOH HOH . 
L 6 HOH B 31 475 75 HOH HOH . 
L 6 HOH B 32 476 76 HOH HOH . 
L 6 HOH B 33 477 77 HOH HOH . 
L 6 HOH B 34 478 81 HOH HOH . 
L 6 HOH B 35 479 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 65B . . . C 3 11.749 12.993 18.077 1 45.55 ? C1 65B 561 A 1 
HETATM 2 O O17 65B . . . C 3 12.509 13.695 17.092 1 49.64 ? O17 65B 561 A 1 
HETATM 3 C C2 65B . . . C 3 11.607 11.536 17.99 1 46.49 ? C2 65B 561 A 1 
HETATM 4 C C2' 65B . . . C 3 12.269 10.737 16.854 1 44.39 ? C2' 65B 561 A 1 
HETATM 5 C C3 65B . . . C 3 10.836 10.829 18.989 1 44 ? C3 65B 561 A 1 
HETATM 6 C C4 65B . . . C 3 10.223 11.551 20.038 1 43.63 ? C4 65B 561 A 1 
HETATM 7 C C5 65B . . . C 3 10.352 12.962 20.141 1 42.97 ? C5 65B 561 A 1 
HETATM 8 C C6 65B . . . C 3 11.094 13.698 19.191 1 44.57 ? C6 65B 561 A 1 
HETATM 9 C C6' 65B . . . C 3 11.18 15.232 19.389 1 44.46 ? C6' 65B 561 A 1 
HETATM 10 C C13 65B . . . C 3 11.815 14.139 15.951 1 54.88 ? C13 65B 561 A 1 
HETATM 11 N N12 65B . . . C 3 10.579 13.563 15.664 1 53.14 ? N12 65B 561 A 1 
HETATM 12 C C11 65B . . . C 3 9.818 13.935 14.569 1 50.39 ? C11 65B 561 A 1 
HETATM 13 N N5 65B . . . C 3 8.623 13.363 14.317 1 46.9 ? N5 65B 561 A 1 
HETATM 14 N N16 65B . . . C 3 10.314 14.935 13.718 1 53.06 ? N16 65B 561 A 1 
HETATM 15 C C15 65B . . . C 3 11.573 15.552 13.962 1 58.19 ? C15 65B 561 A 1 
HETATM 16 N N18 65B . . . C 3 11.996 16.515 13.091 1 53.86 ? N18 65B 561 A 1 
HETATM 17 C C14 65B . . . C 3 12.353 15.151 15.112 1 59.32 ? C14 65B 561 A 1 
HETATM 18 C C21 65B . . . C 3 7.997 12.376 15.029 1 45.78 ? C21 65B 561 A 1 
HETATM 19 C C22 65B . . . C 3 7.011 11.609 14.311 1 46.39 ? C22 65B 561 A 1 
HETATM 20 C C23 65B . . . C 3 6.307 10.547 14.962 1 44.44 ? C23 65B 561 A 1 
HETATM 21 C C24 65B . . . C 3 6.573 10.24 16.322 1 43.5 ? C24 65B 561 A 1 
HETATM 22 C C25 65B . . . C 3 7.543 10.981 17.06 1 42.9 ? C25 65B 561 A 1 
HETATM 23 C C26 65B . . . C 3 8.258 12.047 16.422 1 43.44 ? C26 65B 561 A 1 
HETATM 24 C C27 65B . . . C 3 5.85 9.186 16.933 1 46.3 ? C27 65B 561 A 1 
HETATM 25 N N27 65B . . . C 3 5.226 8.355 17.428 1 48.38 ? N27 65B 561 A 1 
HETATM 26 C C4' 65B . . . C 3 9.473 10.886 21.007 1 44.7 ? C4' 65B 561 A 1 
HETATM 27 N N4' 65B . . . C 3 8.858 10.372 21.81 1 49.61 ? N4' 65B 561 A 1 
HETATM 28 BR BR 65B . . . C 3 14.045 15.924 15.509 1 89.89 ? BR 65B 561 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           28 
#