data_3MEK # _model_server_result.job_id 6acuH7VFQfffcniQbsdlug _model_server_result.datetime_utc '2024-11-04 22:15:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mek # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 3MEK # _exptl.entry_id 3MEK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MEK _cell.length_a 60.809 _cell.length_b 65.923 _cell.length_c 108.102 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MEK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 60 A LEU 59 1_555 A N MSE 61 A MSE 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C MSE 61 A MSE 60 1_555 A N ARG 62 A ARG 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale3 A C LEU 113 A LEU 112 1_555 A N MSE 114 A MSE 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C MSE 114 A MSE 113 1_555 A N ASP 115 A ASP 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C VAL 149 A VAL 148 1_555 A N MSE 150 A MSE 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C MSE 150 A MSE 149 1_555 A N THR 151 A THR 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale7 A C PHE 155 A PHE 154 1_555 A N MSE 156 A MSE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 A C MSE 156 A MSE 155 1_555 A N ARG 157 A ARG 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale9 A C GLU 190 A GLU 189 1_555 A N MSE 191 A MSE 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 A C MSE 191 A MSE 190 1_555 A N GLN 192 A GLN 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C ASP 242 A ASP 241 1_555 A N MSE 243 A MSE 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale12 A C MSE 243 A MSE 242 1_555 A N LEU 244 A LEU 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale13 A C LEU 244 A LEU 243 1_555 A N MSE 245 A MSE 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale14 A C MSE 245 A MSE 244 1_555 A N THR 246 A THR 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale15 A C ASP 275 A ASP 274 1_555 A N MSE 276 A MSE 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale16 A C MSE 276 A MSE 275 1_555 A N LEU 277 A LEU 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale17 A C ALA 308 A ALA 307 1_555 A N MSE 309 A MSE 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale18 A C MSE 309 A MSE 308 1_555 A N CYS 310 A CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale19 A C ALA 335 A ALA 334 1_555 A N MSE 336 A MSE 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale20 A C MSE 336 A MSE 335 1_555 A N ASP 337 A ASP 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale21 A C THR 355 A THR 354 1_555 A N MSE 356 A MSE 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale22 A C MSE 356 A MSE 355 1_555 A N GLU 357 A GLU 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale23 A C VAL 374 A VAL 373 1_555 A N MSE 375 A MSE 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale24 A C MSE 375 A MSE 374 1_555 A N LYS 376 A LYS 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale25 A C GLY 385 A GLY 384 1_555 A N MSE 386 A MSE 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale26 A C MSE 386 A MSE 385 1_555 A N PHE 387 A PHE 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale27 A C ALA 390 A ALA 389 1_555 A N MSE 391 A MSE 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale28 A C MSE 391 A MSE 390 1_555 A N LYS 392 A LYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale29 A C ILE 400 A ILE 399 1_555 A N MSE 401 A MSE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale30 A C MSE 401 A MSE 400 1_555 A N ARG 402 A ARG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? metalc ? metalc1 A SG CYS 50 A CYS 49 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc2 A SG CYS 53 A CYS 52 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc3 A SG CYS 63 A CYS 62 1_555 B ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc4 A SG CYS 66 A CYS 65 1_555 B ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc5 A SG CYS 72 A CYS 71 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc6 A SG CYS 76 A CYS 75 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc7 A NE2 HIS 84 A HIS 83 1_555 B ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc8 A SG CYS 88 A CYS 87 1_555 B ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc9 A SG CYS 209 A CYS 208 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc10 A SG CYS 262 A CYS 261 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc11 A SG CYS 264 A CYS 263 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc12 A SG CYS 267 A CYS 266 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3MEK _atom_sites.fract_transf_matrix[1][1] 0.016445 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015169 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009251 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 500 500 ZN ZN . C 2 ZN A 1 501 501 ZN ZN . D 2 ZN A 1 502 502 ZN ZN . E 3 SAM A 1 510 510 SAM SAM . F 4 HOH A 1 429 1 HOH HOH . F 4 HOH A 2 430 2 HOH HOH . F 4 HOH A 3 431 3 HOH HOH . F 4 HOH A 4 432 4 HOH HOH . F 4 HOH A 5 433 5 HOH HOH . F 4 HOH A 6 434 6 HOH HOH . F 4 HOH A 7 435 7 HOH HOH . F 4 HOH A 8 436 8 HOH HOH . F 4 HOH A 9 437 9 HOH HOH . F 4 HOH A 10 438 10 HOH HOH . F 4 HOH A 11 439 11 HOH HOH . F 4 HOH A 12 440 12 HOH HOH . F 4 HOH A 13 441 13 HOH HOH . F 4 HOH A 14 442 14 HOH HOH . F 4 HOH A 15 443 15 HOH HOH . F 4 HOH A 16 444 16 HOH HOH . F 4 HOH A 17 445 17 HOH HOH . F 4 HOH A 18 446 18 HOH HOH . F 4 HOH A 19 447 19 HOH HOH . F 4 HOH A 20 448 20 HOH HOH . F 4 HOH A 21 449 21 HOH HOH . F 4 HOH A 22 450 22 HOH HOH . F 4 HOH A 23 451 23 HOH HOH . F 4 HOH A 24 452 24 HOH HOH . F 4 HOH A 25 453 25 HOH HOH . F 4 HOH A 26 454 26 HOH HOH . F 4 HOH A 27 455 27 HOH HOH . F 4 HOH A 28 456 28 HOH HOH . F 4 HOH A 29 457 29 HOH HOH . F 4 HOH A 30 458 30 HOH HOH . F 4 HOH A 31 459 31 HOH HOH . F 4 HOH A 32 460 32 HOH HOH . F 4 HOH A 33 461 33 HOH HOH . F 4 HOH A 34 462 34 HOH HOH . F 4 HOH A 35 463 35 HOH HOH . F 4 HOH A 36 464 36 HOH HOH . F 4 HOH A 37 465 37 HOH HOH . F 4 HOH A 38 466 38 HOH HOH . F 4 HOH A 39 467 39 HOH HOH . F 4 HOH A 40 468 40 HOH HOH . F 4 HOH A 41 469 41 HOH HOH . F 4 HOH A 42 470 42 HOH HOH . F 4 HOH A 43 471 43 HOH HOH . F 4 HOH A 44 472 44 HOH HOH . F 4 HOH A 45 473 45 HOH HOH . F 4 HOH A 46 474 46 HOH HOH . F 4 HOH A 47 475 47 HOH HOH . F 4 HOH A 48 476 48 HOH HOH . F 4 HOH A 49 477 49 HOH HOH . F 4 HOH A 50 478 50 HOH HOH . F 4 HOH A 51 479 51 HOH HOH . F 4 HOH A 52 480 52 HOH HOH . F 4 HOH A 53 481 53 HOH HOH . F 4 HOH A 54 482 54 HOH HOH . F 4 HOH A 55 483 55 HOH HOH . F 4 HOH A 56 484 56 HOH HOH . F 4 HOH A 57 485 57 HOH HOH . F 4 HOH A 58 486 58 HOH HOH . F 4 HOH A 59 487 59 HOH HOH . F 4 HOH A 60 488 60 HOH HOH . F 4 HOH A 61 489 61 HOH HOH . F 4 HOH A 62 490 62 HOH HOH . F 4 HOH A 63 491 63 HOH HOH . F 4 HOH A 64 492 64 HOH HOH . F 4 HOH A 65 493 65 HOH HOH . F 4 HOH A 66 494 66 HOH HOH . F 4 HOH A 67 495 67 HOH HOH . F 4 HOH A 68 496 68 HOH HOH . F 4 HOH A 69 497 69 HOH HOH . F 4 HOH A 70 498 70 HOH HOH . F 4 HOH A 71 499 71 HOH HOH . F 4 HOH A 72 503 72 HOH HOH . F 4 HOH A 73 504 73 HOH HOH . F 4 HOH A 74 505 74 HOH HOH . F 4 HOH A 75 506 75 HOH HOH . F 4 HOH A 76 507 76 HOH HOH . F 4 HOH A 77 508 77 HOH HOH . F 4 HOH A 78 509 78 HOH HOH . F 4 HOH A 79 511 79 HOH HOH . F 4 HOH A 80 512 80 HOH HOH . F 4 HOH A 81 513 81 HOH HOH . F 4 HOH A 82 514 82 HOH HOH . F 4 HOH A 83 515 83 HOH HOH . F 4 HOH A 84 516 84 HOH HOH . F 4 HOH A 85 517 85 HOH HOH . F 4 HOH A 86 518 86 HOH HOH . F 4 HOH A 87 519 87 HOH HOH . F 4 HOH A 88 520 88 HOH HOH . F 4 HOH A 89 521 89 HOH HOH . F 4 HOH A 90 522 90 HOH HOH . F 4 HOH A 91 523 91 HOH HOH . F 4 HOH A 92 524 92 HOH HOH . F 4 HOH A 93 525 93 HOH HOH . F 4 HOH A 94 526 94 HOH HOH . F 4 HOH A 95 527 95 HOH HOH . F 4 HOH A 96 528 96 HOH HOH . F 4 HOH A 97 529 97 HOH HOH . F 4 HOH A 98 530 98 HOH HOH . F 4 HOH A 99 531 99 HOH HOH . F 4 HOH A 100 532 100 HOH HOH . F 4 HOH A 101 533 101 HOH HOH . F 4 HOH A 102 534 102 HOH HOH . F 4 HOH A 103 535 103 HOH HOH . F 4 HOH A 104 536 104 HOH HOH . F 4 HOH A 105 537 105 HOH HOH . F 4 HOH A 106 538 106 HOH HOH . F 4 HOH A 107 539 107 HOH HOH . F 4 HOH A 108 540 108 HOH HOH . F 4 HOH A 109 541 109 HOH HOH . F 4 HOH A 110 542 110 HOH HOH . F 4 HOH A 111 543 111 HOH HOH . F 4 HOH A 112 544 112 HOH HOH . F 4 HOH A 113 545 113 HOH HOH . F 4 HOH A 114 546 114 HOH HOH . F 4 HOH A 115 547 115 HOH HOH . F 4 HOH A 116 548 116 HOH HOH . F 4 HOH A 117 549 117 HOH HOH . F 4 HOH A 118 550 118 HOH HOH . F 4 HOH A 119 551 119 HOH HOH . F 4 HOH A 120 552 120 HOH HOH . F 4 HOH A 121 553 121 HOH HOH . F 4 HOH A 122 554 122 HOH HOH . F 4 HOH A 123 555 123 HOH HOH . F 4 HOH A 124 556 124 HOH HOH . F 4 HOH A 125 557 125 HOH HOH . F 4 HOH A 126 558 126 HOH HOH . F 4 HOH A 127 559 127 HOH HOH . F 4 HOH A 128 560 128 HOH HOH . F 4 HOH A 129 561 129 HOH HOH . F 4 HOH A 130 562 130 HOH HOH . F 4 HOH A 131 563 131 HOH HOH . F 4 HOH A 132 564 132 HOH HOH . F 4 HOH A 133 565 133 HOH HOH . F 4 HOH A 134 566 134 HOH HOH . F 4 HOH A 135 567 135 HOH HOH . F 4 HOH A 136 568 136 HOH HOH . F 4 HOH A 137 569 137 HOH HOH . F 4 HOH A 138 570 138 HOH HOH . F 4 HOH A 139 571 139 HOH HOH . F 4 HOH A 140 572 140 HOH HOH . F 4 HOH A 141 573 141 HOH HOH . F 4 HOH A 142 574 142 HOH HOH . F 4 HOH A 143 575 143 HOH HOH . F 4 HOH A 144 576 144 HOH HOH . F 4 HOH A 145 577 145 HOH HOH . F 4 HOH A 146 578 146 HOH HOH . F 4 HOH A 147 579 147 HOH HOH . F 4 HOH A 148 580 148 HOH HOH . F 4 HOH A 149 581 149 HOH HOH . F 4 HOH A 150 582 150 HOH HOH . F 4 HOH A 151 583 151 HOH HOH . F 4 HOH A 152 584 152 HOH HOH . F 4 HOH A 153 585 153 HOH HOH . F 4 HOH A 154 586 154 HOH HOH . F 4 HOH A 155 587 155 HOH HOH . F 4 HOH A 156 588 156 HOH HOH . F 4 HOH A 157 589 157 HOH HOH . F 4 HOH A 158 590 158 HOH HOH . F 4 HOH A 159 591 159 HOH HOH . F 4 HOH A 160 592 160 HOH HOH . F 4 HOH A 161 593 161 HOH HOH . F 4 HOH A 162 594 162 HOH HOH . F 4 HOH A 163 595 163 HOH HOH . F 4 HOH A 164 596 164 HOH HOH . F 4 HOH A 165 597 165 HOH HOH . F 4 HOH A 166 598 166 HOH HOH . F 4 HOH A 167 599 167 HOH HOH . F 4 HOH A 168 600 168 HOH HOH . F 4 HOH A 169 601 169 HOH HOH . F 4 HOH A 170 602 170 HOH HOH . F 4 HOH A 171 603 171 HOH HOH . F 4 HOH A 172 604 172 HOH HOH . F 4 HOH A 173 605 173 HOH HOH . F 4 HOH A 174 606 174 HOH HOH . F 4 HOH A 175 607 175 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 16.201 _atom_site.Cartn_y 26.749 _atom_site.Cartn_z -11.77 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 13.13 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 500 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #