data_3MEL # _model_server_result.job_id WlLWE5w2VK3IlMl3XsKfDA _model_server_result.datetime_utc '2025-03-30 11:31:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mel # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":223}' # _entry.id 3MEL # _exptl.entry_id 3MEL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.13 _cell.angle_gamma 90 _cell.entry_id 3MEL _cell.length_a 62.286 _cell.length_b 102.112 _cell.length_c 94.277 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MEL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,T,U 1 1 C,D,N,O,P,Q,R,S,V,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 95 A GLU 95 1_555 A N MSE 96 A MSE 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 96 A MSE 96 1_555 A N THR 97 A THR 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale3 A C GLY 204 A GLY 204 1_555 A N MSE 205 A MSE 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 A C MSE 205 A MSE 205 1_555 A N ILE 206 A ILE 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 B C GLU 95 B GLU 95 1_555 B N MSE 96 B MSE 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 B C MSE 96 B MSE 96 1_555 B N THR 97 B THR 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale7 B C GLY 204 B GLY 204 1_555 B N MSE 205 B MSE 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 B C MSE 205 B MSE 205 1_555 B N ILE 206 B ILE 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale9 C C MSE 1 C MSE 1 1_555 C N SER 2 C SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale10 C C GLU 95 C GLU 95 1_555 C N MSE 96 C MSE 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 C C MSE 96 C MSE 96 1_555 C N THR 97 C THR 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 C C GLY 204 C GLY 204 1_555 C N MSE 205 C MSE 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 C C MSE 205 C MSE 205 1_555 C N ILE 206 C ILE 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale14 D C GLU 95 D GLU 95 1_555 D N MSE 96 D MSE 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 D C MSE 96 D MSE 96 1_555 D N THR 97 D THR 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 D C GLY 204 D GLY 204 1_555 D N MSE 205 D MSE 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale17 D C MSE 205 D MSE 205 1_555 D N ILE 206 D ILE 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A OD2 ASP 30 A ASP 30 1_555 F MG MG . A MG 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc2 A OD1 ASP 49 A ASP 49 1_555 F MG MG . A MG 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc3 F MG MG . A MG 223 1_555 E O2A TPP . A TPP 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc4 B OD2 ASP 30 B ASP 30 1_555 K MG MG . B MG 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? metalc ? metalc5 B OD1 ASP 49 B ASP 49 1_555 K MG MG . B MG 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc6 B O PHE 50 B PHE 50 1_555 L MG MG . B MG 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc7 C OD2 ASP 30 C ASP 30 1_555 O MG MG . C MG 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc8 C OD1 ASP 49 C ASP 49 1_555 O MG MG . C MG 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? metalc ? metalc9 D OD2 ASP 30 D ASP 30 1_555 R MG MG . D MG 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc10 D OD1 ASP 49 D ASP 49 1_555 R MG MG . D MG 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc11 D OD2 ASP 79 D ASP 79 1_555 R MG MG . D MG 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc12 R MG MG . D MG 223 1_555 Q O2A TPP . D TPP 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 3MEL _atom_sites.fract_transf_matrix[1][1] 0.016055 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002294 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009793 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010715 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 TPP A 1 902 902 TPP TPP . F 3 MG A 1 223 2 MG MG . G 3 MG A 1 224 7 MG MG . H 3 MG A 1 225 9 MG MG . I 3 MG A 1 226 10 MG MG . J 4 PO4 B 1 223 2 PO4 PO4 . K 3 MG B 1 224 3 MG MG . L 3 MG B 1 225 6 MG MG . M 3 MG B 1 226 8 MG MG . N 4 PO4 C 1 223 1 PO4 PO4 . O 3 MG C 1 224 4 MG MG . P 3 MG C 1 225 5 MG MG . Q 2 TPP D 1 902 902 TPP TPP . R 3 MG D 1 223 1 MG MG . S 3 MG D 1 224 11 MG MG . T 5 HOH A 1 227 4 HOH HOH . T 5 HOH A 2 228 6 HOH HOH . U 5 HOH B 1 227 3 HOH HOH . V 5 HOH C 1 226 1 HOH HOH . V 5 HOH C 2 227 2 HOH HOH . W 5 HOH D 1 225 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . J 4 28.011 -11.942 107.555 1 63.53 ? P PO4 223 B 1 HETATM 2 O O1 PO4 . . . J 4 27.907 -11.472 106.117 1 69.89 ? O1 PO4 223 B 1 HETATM 3 O O2 PO4 . . . J 4 26.823 -11.378 108.319 1 51.03 ? O2 PO4 223 B 1 HETATM 4 O O3 PO4 . . . J 4 27.979 -13.455 107.564 1 57.41 ? O3 PO4 223 B 1 HETATM 5 O O4 PO4 . . . J 4 29.334 -11.5 108.159 1 52.85 ? O4 PO4 223 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #