data_3MES # _model_server_result.job_id j6EiDkisimtSd-DFGPlGVA _model_server_result.datetime_utc '2024-12-21 17:05:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mes # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":426}' # _entry.id 3MES # _exptl.entry_id 3MES _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.54 _cell.angle_gamma 90 _cell.entry_id 3MES _cell.length_a 170.091 _cell.length_b 67.957 _cell.length_c 92.109 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MES _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N ? 3 J N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 271 A GLU 271 1_555 H MG MG . A MG 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc2 A OE1 GLU 271 A GLU 271 1_555 H MG MG . A MG 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc3 A O GLU 304 A GLU 304 1_555 H MG MG . A MG 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc4 A OE1 GLU 304 A GLU 304 1_555 H MG MG . A MG 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? metalc ? metalc5 A O TYR 307 A TYR 307 1_555 H MG MG . A MG 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc6 C O1B ADP . A ADP 425 1_555 D MG MG . A MG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc7 C O1A ADP . A ADP 425 1_555 D MG MG . A MG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc8 D MG MG . A MG 426 1_555 F O2 PT3 . A PT3 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc9 D MG MG . A MG 426 1_555 N O HOH . A HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc10 D MG MG . A MG 426 1_555 N O HOH . A HOH 545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc11 B OE2 GLU 271 B GLU 271 1_555 M MG MG . B MG 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc12 B OE1 GLU 271 B GLU 271 1_555 M MG MG . B MG 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc13 B O GLU 304 B GLU 304 1_555 M MG MG . B MG 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc14 B OE1 GLU 304 B GLU 304 1_555 M MG MG . B MG 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc15 B O TYR 307 B TYR 307 1_555 M MG MG . B MG 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc16 I O3B ADP . B ADP 425 1_555 J MG MG . B MG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? metalc ? metalc17 I O1A ADP . B ADP 425 1_555 J MG MG . B MG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? metalc ? metalc18 J MG MG . B MG 426 1_555 L O1 PT3 . B PT3 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc19 J MG MG . B MG 426 1_555 L O11 PT3 . B PT3 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc20 J MG MG . B MG 426 1_555 O O HOH . B HOH 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3MES _atom_sites.fract_transf_matrix[1][1] 0.005879 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002937 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014715 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012136 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 425 1 ADP ADP . D 3 MG A 1 426 1 MG MG . E 4 DME A 1 427 1 DME DME . F 5 PT3 A 1 428 1 PT3 PT3 . G 6 GOL A 1 429 1 GOL GOL . H 3 MG A 1 430 1 MG MG . I 2 ADP B 1 425 1 ADP ADP . J 3 MG B 1 426 1 MG MG . K 4 DME B 1 427 1 DME DME . L 5 PT3 B 1 428 1 PT3 PT3 . M 3 MG B 1 429 1 MG MG . N 7 HOH A 1 431 4 HOH HOH . N 7 HOH A 2 432 10 HOH HOH . N 7 HOH A 3 433 18 HOH HOH . N 7 HOH A 4 434 20 HOH HOH . N 7 HOH A 5 435 21 HOH HOH . N 7 HOH A 6 436 24 HOH HOH . N 7 HOH A 7 437 25 HOH HOH . N 7 HOH A 8 438 28 HOH HOH . N 7 HOH A 9 439 29 HOH HOH . N 7 HOH A 10 440 31 HOH HOH . N 7 HOH A 11 441 32 HOH HOH . N 7 HOH A 12 442 34 HOH HOH . N 7 HOH A 13 443 35 HOH HOH . N 7 HOH A 14 444 40 HOH HOH . N 7 HOH A 15 445 42 HOH HOH . N 7 HOH A 16 446 43 HOH HOH . N 7 HOH A 17 447 44 HOH HOH . N 7 HOH A 18 448 46 HOH HOH . N 7 HOH A 19 449 47 HOH HOH . N 7 HOH A 20 450 48 HOH HOH . N 7 HOH A 21 451 49 HOH HOH . N 7 HOH A 22 452 52 HOH HOH . N 7 HOH A 23 453 53 HOH HOH . N 7 HOH A 24 454 54 HOH HOH . N 7 HOH A 25 455 56 HOH HOH . N 7 HOH A 26 456 58 HOH HOH . N 7 HOH A 27 457 59 HOH HOH . N 7 HOH A 28 458 60 HOH HOH . N 7 HOH A 29 459 62 HOH HOH . N 7 HOH A 30 460 64 HOH HOH . N 7 HOH A 31 461 70 HOH HOH . N 7 HOH A 32 462 74 HOH HOH . N 7 HOH A 33 463 75 HOH HOH . N 7 HOH A 34 464 76 HOH HOH . N 7 HOH A 35 465 77 HOH HOH . N 7 HOH A 36 466 79 HOH HOH . N 7 HOH A 37 467 81 HOH HOH . N 7 HOH A 38 468 82 HOH HOH . N 7 HOH A 39 469 85 HOH HOH . N 7 HOH A 40 470 90 HOH HOH . N 7 HOH A 41 471 92 HOH HOH . N 7 HOH A 42 472 93 HOH HOH . N 7 HOH A 43 473 94 HOH HOH . N 7 HOH A 44 474 99 HOH HOH . N 7 HOH A 45 475 100 HOH HOH . N 7 HOH A 46 476 101 HOH HOH . N 7 HOH A 47 477 102 HOH HOH . N 7 HOH A 48 478 103 HOH HOH . N 7 HOH A 49 479 106 HOH HOH . N 7 HOH A 50 480 107 HOH HOH . N 7 HOH A 51 481 109 HOH HOH . N 7 HOH A 52 482 110 HOH HOH . N 7 HOH A 53 483 114 HOH HOH . N 7 HOH A 54 484 115 HOH HOH . N 7 HOH A 55 485 116 HOH HOH . N 7 HOH A 56 486 118 HOH HOH . N 7 HOH A 57 487 119 HOH HOH . N 7 HOH A 58 488 123 HOH HOH . N 7 HOH A 59 489 124 HOH HOH . N 7 HOH A 60 490 125 HOH HOH . N 7 HOH A 61 491 126 HOH HOH . N 7 HOH A 62 492 133 HOH HOH . N 7 HOH A 63 493 134 HOH HOH . N 7 HOH A 64 494 135 HOH HOH . N 7 HOH A 65 495 136 HOH HOH . N 7 HOH A 66 496 137 HOH HOH . N 7 HOH A 67 497 138 HOH HOH . N 7 HOH A 68 498 141 HOH HOH . N 7 HOH A 69 499 143 HOH HOH . N 7 HOH A 70 500 144 HOH HOH . N 7 HOH A 71 501 145 HOH HOH . N 7 HOH A 72 502 147 HOH HOH . N 7 HOH A 73 503 149 HOH HOH . N 7 HOH A 74 504 152 HOH HOH . N 7 HOH A 75 505 153 HOH HOH . N 7 HOH A 76 506 155 HOH HOH . N 7 HOH A 77 507 157 HOH HOH . N 7 HOH A 78 508 162 HOH HOH . N 7 HOH A 79 509 163 HOH HOH . N 7 HOH A 80 510 164 HOH HOH . N 7 HOH A 81 511 166 HOH HOH . N 7 HOH A 82 512 167 HOH HOH . N 7 HOH A 83 513 170 HOH HOH . N 7 HOH A 84 514 176 HOH HOH . N 7 HOH A 85 515 177 HOH HOH . N 7 HOH A 86 516 180 HOH HOH . N 7 HOH A 87 517 183 HOH HOH . N 7 HOH A 88 518 184 HOH HOH . N 7 HOH A 89 519 187 HOH HOH . N 7 HOH A 90 520 189 HOH HOH . N 7 HOH A 91 521 190 HOH HOH . N 7 HOH A 92 522 191 HOH HOH . N 7 HOH A 93 523 196 HOH HOH . N 7 HOH A 94 524 197 HOH HOH . N 7 HOH A 95 525 201 HOH HOH . N 7 HOH A 96 526 204 HOH HOH . N 7 HOH A 97 527 205 HOH HOH . N 7 HOH A 98 528 209 HOH HOH . N 7 HOH A 99 529 214 HOH HOH . N 7 HOH A 100 530 215 HOH HOH . N 7 HOH A 101 531 216 HOH HOH . N 7 HOH A 102 532 218 HOH HOH . N 7 HOH A 103 533 219 HOH HOH . N 7 HOH A 104 534 221 HOH HOH . N 7 HOH A 105 535 222 HOH HOH . N 7 HOH A 106 536 224 HOH HOH . N 7 HOH A 107 537 232 HOH HOH . N 7 HOH A 108 538 233 HOH HOH . N 7 HOH A 109 539 237 HOH HOH . N 7 HOH A 110 540 238 HOH HOH . N 7 HOH A 111 541 242 HOH HOH . N 7 HOH A 112 542 243 HOH HOH . N 7 HOH A 113 543 246 HOH HOH . N 7 HOH A 114 544 247 HOH HOH . N 7 HOH A 115 545 250 HOH HOH . N 7 HOH A 116 546 251 HOH HOH . N 7 HOH A 117 547 252 HOH HOH . N 7 HOH A 118 548 254 HOH HOH . N 7 HOH A 119 549 256 HOH HOH . N 7 HOH A 120 550 259 HOH HOH . N 7 HOH A 121 551 262 HOH HOH . N 7 HOH A 122 552 264 HOH HOH . N 7 HOH A 123 553 266 HOH HOH . N 7 HOH A 124 554 267 HOH HOH . N 7 HOH A 125 555 269 HOH HOH . N 7 HOH A 126 556 271 HOH HOH . N 7 HOH A 127 557 273 HOH HOH . N 7 HOH A 128 558 276 HOH HOH . N 7 HOH A 129 559 277 HOH HOH . N 7 HOH A 130 560 278 HOH HOH . N 7 HOH A 131 561 279 HOH HOH . N 7 HOH A 132 562 283 HOH HOH . N 7 HOH A 133 563 287 HOH HOH . N 7 HOH A 134 564 298 HOH HOH . N 7 HOH A 135 565 299 HOH HOH . N 7 HOH A 136 566 302 HOH HOH . N 7 HOH A 137 567 303 HOH HOH . N 7 HOH A 138 568 304 HOH HOH . N 7 HOH A 139 569 312 HOH HOH . N 7 HOH A 140 570 313 HOH HOH . N 7 HOH A 141 571 314 HOH HOH . N 7 HOH A 142 572 315 HOH HOH . N 7 HOH A 143 573 316 HOH HOH . O 7 HOH B 1 430 1 HOH HOH . O 7 HOH B 2 431 2 HOH HOH . O 7 HOH B 3 432 3 HOH HOH . O 7 HOH B 4 433 5 HOH HOH . O 7 HOH B 5 434 6 HOH HOH . O 7 HOH B 6 435 7 HOH HOH . O 7 HOH B 7 436 8 HOH HOH . O 7 HOH B 8 437 9 HOH HOH . O 7 HOH B 9 438 11 HOH HOH . O 7 HOH B 10 439 12 HOH HOH . O 7 HOH B 11 440 13 HOH HOH . O 7 HOH B 12 441 15 HOH HOH . O 7 HOH B 13 442 19 HOH HOH . O 7 HOH B 14 443 22 HOH HOH . O 7 HOH B 15 444 26 HOH HOH . O 7 HOH B 16 445 27 HOH HOH . O 7 HOH B 17 446 30 HOH HOH . O 7 HOH B 18 447 33 HOH HOH . O 7 HOH B 19 448 36 HOH HOH . O 7 HOH B 20 449 38 HOH HOH . O 7 HOH B 21 450 39 HOH HOH . O 7 HOH B 22 451 45 HOH HOH . O 7 HOH B 23 452 51 HOH HOH . O 7 HOH B 24 453 55 HOH HOH . O 7 HOH B 25 454 61 HOH HOH . O 7 HOH B 26 455 65 HOH HOH . O 7 HOH B 27 456 66 HOH HOH . O 7 HOH B 28 457 67 HOH HOH . O 7 HOH B 29 458 68 HOH HOH . O 7 HOH B 30 459 69 HOH HOH . O 7 HOH B 31 460 71 HOH HOH . O 7 HOH B 32 461 72 HOH HOH . O 7 HOH B 33 462 73 HOH HOH . O 7 HOH B 34 463 78 HOH HOH . O 7 HOH B 35 464 83 HOH HOH . O 7 HOH B 36 465 84 HOH HOH . O 7 HOH B 37 466 86 HOH HOH . O 7 HOH B 38 467 87 HOH HOH . O 7 HOH B 39 468 88 HOH HOH . O 7 HOH B 40 469 89 HOH HOH . O 7 HOH B 41 470 91 HOH HOH . O 7 HOH B 42 471 95 HOH HOH . O 7 HOH B 43 472 96 HOH HOH . O 7 HOH B 44 473 97 HOH HOH . O 7 HOH B 45 474 104 HOH HOH . O 7 HOH B 46 475 108 HOH HOH . O 7 HOH B 47 476 111 HOH HOH . O 7 HOH B 48 477 120 HOH HOH . O 7 HOH B 49 478 121 HOH HOH . O 7 HOH B 50 479 127 HOH HOH . O 7 HOH B 51 480 129 HOH HOH . O 7 HOH B 52 481 131 HOH HOH . O 7 HOH B 53 482 132 HOH HOH . O 7 HOH B 54 483 139 HOH HOH . O 7 HOH B 55 484 142 HOH HOH . O 7 HOH B 56 485 146 HOH HOH . O 7 HOH B 57 486 148 HOH HOH . O 7 HOH B 58 487 150 HOH HOH . O 7 HOH B 59 488 151 HOH HOH . O 7 HOH B 60 489 156 HOH HOH . O 7 HOH B 61 490 159 HOH HOH . O 7 HOH B 62 491 160 HOH HOH . O 7 HOH B 63 492 161 HOH HOH . O 7 HOH B 64 493 165 HOH HOH . O 7 HOH B 65 494 168 HOH HOH . O 7 HOH B 66 495 169 HOH HOH . O 7 HOH B 67 496 172 HOH HOH . O 7 HOH B 68 497 174 HOH HOH . O 7 HOH B 69 498 175 HOH HOH . O 7 HOH B 70 499 181 HOH HOH . O 7 HOH B 71 500 186 HOH HOH . O 7 HOH B 72 501 192 HOH HOH . O 7 HOH B 73 502 195 HOH HOH . O 7 HOH B 74 503 198 HOH HOH . O 7 HOH B 75 504 200 HOH HOH . O 7 HOH B 76 505 203 HOH HOH . O 7 HOH B 77 506 211 HOH HOH . O 7 HOH B 78 507 212 HOH HOH . O 7 HOH B 79 508 220 HOH HOH . O 7 HOH B 80 509 223 HOH HOH . O 7 HOH B 81 510 226 HOH HOH . O 7 HOH B 82 511 227 HOH HOH . O 7 HOH B 83 512 228 HOH HOH . O 7 HOH B 84 513 229 HOH HOH . O 7 HOH B 85 514 231 HOH HOH . O 7 HOH B 86 515 234 HOH HOH . O 7 HOH B 87 516 241 HOH HOH . O 7 HOH B 88 517 248 HOH HOH . O 7 HOH B 89 518 253 HOH HOH . O 7 HOH B 90 519 255 HOH HOH . O 7 HOH B 91 520 257 HOH HOH . O 7 HOH B 92 521 258 HOH HOH . O 7 HOH B 93 522 261 HOH HOH . O 7 HOH B 94 523 263 HOH HOH . O 7 HOH B 95 524 265 HOH HOH . O 7 HOH B 96 525 274 HOH HOH . O 7 HOH B 97 526 282 HOH HOH . O 7 HOH B 98 527 284 HOH HOH . O 7 HOH B 99 528 288 HOH HOH . O 7 HOH B 100 529 289 HOH HOH . O 7 HOH B 101 530 293 HOH HOH . O 7 HOH B 102 531 295 HOH HOH . O 7 HOH B 103 532 296 HOH HOH . O 7 HOH B 104 533 297 HOH HOH . O 7 HOH B 105 534 300 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 3 _atom_site.Cartn_x 37.778 _atom_site.Cartn_y 7.745 _atom_site.Cartn_z -2.249 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 426 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #