data_3MEV # _model_server_result.job_id iMixymaVLJXfXQc4CE7OEw _model_server_result.datetime_utc '2024-11-22 01:16:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mev # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1}' # _entry.id 3MEV # _exptl.entry_id 3MEV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MEV _cell.length_a 49.966 _cell.length_b 64.979 _cell.length_c 104.967 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MEV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 6 A LEU 119 1_555 A N MSE 7 A MSE 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 7 A MSE 120 1_555 A N THR 8 A THR 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C ALA 14 A ALA 127 1_555 A N MSE 15 A MSE 128 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C ALA 14 A ALA 127 1_555 A N MSE 15 A MSE 128 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C MSE 15 A MSE 128 1_555 A N THR 16 A THR 129 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 A C MSE 15 A MSE 128 1_555 A N THR 16 A THR 129 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale7 B C LEU 6 B LEU 119 1_555 B N MSE 7 B MSE 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 B C MSE 7 B MSE 120 1_555 B N THR 8 B THR 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 B C ALA 14 B ALA 127 1_555 B N MSE 15 B MSE 128 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.334 ? covale ? covale10 B C ALA 14 B ALA 127 1_555 B N MSE 15 B MSE 128 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.33 ? covale ? covale11 B C MSE 15 B MSE 128 1_555 B N THR 16 B THR 129 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale12 B C MSE 15 B MSE 128 1_555 B N THR 16 B THR 129 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale13 C C THR 3 C THR 3 1_555 C N M3L 4 C M3L 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 D C THR 3 D THR 3 1_555 D N M3L 4 D M3L 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 3MEV _atom_sites.fract_transf_matrix[1][1] 0.020014 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 A 1 1 1 SO4 SO4 . F 4 GOL B 1 1 1 GOL GOL . G 3 SO4 B 1 2 2 SO4 SO4 . H 5 HOH A 1 4 4 HOH HOH . H 5 HOH A 2 5 5 HOH HOH . H 5 HOH A 3 6 6 HOH HOH . H 5 HOH A 4 11 11 HOH HOH . H 5 HOH A 5 15 15 HOH HOH . H 5 HOH A 6 16 16 HOH HOH . H 5 HOH A 7 19 19 HOH HOH . H 5 HOH A 8 22 22 HOH HOH . H 5 HOH A 9 27 27 HOH HOH . H 5 HOH A 10 32 32 HOH HOH . H 5 HOH A 11 34 34 HOH HOH . H 5 HOH A 12 38 38 HOH HOH . H 5 HOH A 13 39 39 HOH HOH . H 5 HOH A 14 42 42 HOH HOH . H 5 HOH A 15 44 44 HOH HOH . H 5 HOH A 16 48 48 HOH HOH . H 5 HOH A 17 52 52 HOH HOH . H 5 HOH A 18 53 53 HOH HOH . H 5 HOH A 19 56 56 HOH HOH . H 5 HOH A 20 61 61 HOH HOH . H 5 HOH A 21 62 62 HOH HOH . H 5 HOH A 22 67 67 HOH HOH . H 5 HOH A 23 69 69 HOH HOH . H 5 HOH A 24 71 71 HOH HOH . H 5 HOH A 25 74 74 HOH HOH . H 5 HOH A 26 76 76 HOH HOH . H 5 HOH A 27 77 77 HOH HOH . H 5 HOH A 28 78 78 HOH HOH . H 5 HOH A 29 79 79 HOH HOH . H 5 HOH A 30 82 82 HOH HOH . H 5 HOH A 31 85 85 HOH HOH . H 5 HOH A 32 89 89 HOH HOH . H 5 HOH A 33 91 91 HOH HOH . H 5 HOH A 34 93 93 HOH HOH . H 5 HOH A 35 95 95 HOH HOH . H 5 HOH A 36 100 100 HOH HOH . H 5 HOH A 37 107 107 HOH HOH . H 5 HOH A 38 112 112 HOH HOH . H 5 HOH A 39 294 114 HOH HOH . H 5 HOH A 40 295 116 HOH HOH . H 5 HOH A 41 296 117 HOH HOH . H 5 HOH A 42 297 118 HOH HOH . H 5 HOH A 43 298 119 HOH HOH . H 5 HOH A 44 299 120 HOH HOH . H 5 HOH A 45 300 122 HOH HOH . H 5 HOH A 46 301 125 HOH HOH . H 5 HOH A 47 302 126 HOH HOH . H 5 HOH A 48 303 127 HOH HOH . H 5 HOH A 49 304 130 HOH HOH . H 5 HOH A 50 305 132 HOH HOH . H 5 HOH A 51 306 134 HOH HOH . H 5 HOH A 52 307 135 HOH HOH . H 5 HOH A 53 308 137 HOH HOH . H 5 HOH A 54 309 139 HOH HOH . H 5 HOH A 55 310 141 HOH HOH . H 5 HOH A 56 311 142 HOH HOH . H 5 HOH A 57 312 144 HOH HOH . H 5 HOH A 58 313 150 HOH HOH . H 5 HOH A 59 314 157 HOH HOH . H 5 HOH A 60 315 160 HOH HOH . H 5 HOH A 61 316 265 HOH HOH . H 5 HOH A 62 317 275 HOH HOH . H 5 HOH A 63 318 276 HOH HOH . H 5 HOH A 64 319 278 HOH HOH . H 5 HOH A 65 320 281 HOH HOH . I 5 HOH B 1 8 8 HOH HOH . I 5 HOH B 2 9 9 HOH HOH . I 5 HOH B 3 10 10 HOH HOH . I 5 HOH B 4 12 12 HOH HOH . I 5 HOH B 5 13 13 HOH HOH . I 5 HOH B 6 14 14 HOH HOH . I 5 HOH B 7 17 17 HOH HOH . I 5 HOH B 8 20 20 HOH HOH . I 5 HOH B 9 23 23 HOH HOH . I 5 HOH B 10 24 24 HOH HOH . I 5 HOH B 11 25 25 HOH HOH . I 5 HOH B 12 28 28 HOH HOH . I 5 HOH B 13 29 29 HOH HOH . I 5 HOH B 14 30 30 HOH HOH . I 5 HOH B 15 31 31 HOH HOH . I 5 HOH B 16 33 33 HOH HOH . I 5 HOH B 17 35 35 HOH HOH . I 5 HOH B 18 36 36 HOH HOH . I 5 HOH B 19 37 37 HOH HOH . I 5 HOH B 20 40 40 HOH HOH . I 5 HOH B 21 41 41 HOH HOH . I 5 HOH B 22 43 43 HOH HOH . I 5 HOH B 23 46 46 HOH HOH . I 5 HOH B 24 49 49 HOH HOH . I 5 HOH B 25 50 50 HOH HOH . I 5 HOH B 26 51 51 HOH HOH . I 5 HOH B 27 54 54 HOH HOH . I 5 HOH B 28 57 57 HOH HOH . I 5 HOH B 29 59 59 HOH HOH . I 5 HOH B 30 60 60 HOH HOH . I 5 HOH B 31 63 63 HOH HOH . I 5 HOH B 32 65 65 HOH HOH . I 5 HOH B 33 66 66 HOH HOH . I 5 HOH B 34 68 68 HOH HOH . I 5 HOH B 35 70 70 HOH HOH . I 5 HOH B 36 72 72 HOH HOH . I 5 HOH B 37 73 73 HOH HOH . I 5 HOH B 38 75 75 HOH HOH . I 5 HOH B 39 80 80 HOH HOH . I 5 HOH B 40 83 83 HOH HOH . I 5 HOH B 41 84 84 HOH HOH . I 5 HOH B 42 86 86 HOH HOH . I 5 HOH B 43 87 87 HOH HOH . I 5 HOH B 44 88 88 HOH HOH . I 5 HOH B 45 90 90 HOH HOH . I 5 HOH B 46 92 92 HOH HOH . I 5 HOH B 47 94 94 HOH HOH . I 5 HOH B 48 96 96 HOH HOH . I 5 HOH B 49 97 97 HOH HOH . I 5 HOH B 50 98 98 HOH HOH . I 5 HOH B 51 99 99 HOH HOH . I 5 HOH B 52 101 101 HOH HOH . I 5 HOH B 53 102 102 HOH HOH . I 5 HOH B 54 103 103 HOH HOH . I 5 HOH B 55 105 105 HOH HOH . I 5 HOH B 56 106 106 HOH HOH . I 5 HOH B 57 108 108 HOH HOH . I 5 HOH B 58 109 109 HOH HOH . I 5 HOH B 59 111 111 HOH HOH . I 5 HOH B 60 294 1 HOH HOH . I 5 HOH B 61 295 2 HOH HOH . I 5 HOH B 62 296 123 HOH HOH . I 5 HOH B 63 297 131 HOH HOH . I 5 HOH B 64 298 136 HOH HOH . I 5 HOH B 65 299 138 HOH HOH . I 5 HOH B 66 300 140 HOH HOH . I 5 HOH B 67 301 143 HOH HOH . I 5 HOH B 68 302 146 HOH HOH . I 5 HOH B 69 303 147 HOH HOH . I 5 HOH B 70 304 154 HOH HOH . I 5 HOH B 71 305 155 HOH HOH . I 5 HOH B 72 306 156 HOH HOH . I 5 HOH B 73 307 161 HOH HOH . I 5 HOH B 74 308 184 HOH HOH . I 5 HOH B 75 309 267 HOH HOH . I 5 HOH B 76 310 268 HOH HOH . I 5 HOH B 77 311 269 HOH HOH . I 5 HOH B 78 312 270 HOH HOH . I 5 HOH B 79 313 271 HOH HOH . I 5 HOH B 80 314 272 HOH HOH . I 5 HOH B 81 315 274 HOH HOH . I 5 HOH B 82 316 279 HOH HOH . I 5 HOH B 83 321 282 HOH HOH . I 5 HOH B 84 322 292 HOH HOH . J 5 HOH C 1 18 18 HOH HOH . J 5 HOH C 2 26 26 HOH HOH . J 5 HOH C 3 124 124 HOH HOH . J 5 HOH C 4 266 266 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 -32.016 15.008 -38.179 1 23.31 ? C1 GOL 1 B 1 HETATM 2 O O1 GOL . . . F 4 -30.795 15.645 -38.403 1 20.35 ? O1 GOL 1 B 1 HETATM 3 C C2 GOL . . . F 4 -32.78 15.823 -37.146 1 23.53 ? C2 GOL 1 B 1 HETATM 4 O O2 GOL . . . F 4 -33.258 17.028 -37.703 1 24.01 ? O2 GOL 1 B 1 HETATM 5 C C3 GOL . . . F 4 -33.944 14.983 -36.636 1 25.27 ? C3 GOL 1 B 1 HETATM 6 O O3 GOL . . . F 4 -34.494 15.657 -35.528 1 30.45 ? O3 GOL 1 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #