data_3MFP # _model_server_result.job_id 7u9NuEG5SvZoqckak1jXTg _model_server_result.datetime_utc '2024-10-12 19:22:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mfp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":376}' # _entry.id 3MFP # _exptl.entry_id 3MFP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? pentameric 5 'representative helical assembly' 1 ? monomeric 1 'helical asymmetric unit' 2 ? monomeric 1 'helical asymmetric unit, std helical frame' 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B 1 (1-5) A,B 2 3 A,B 3 H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] H 'transform to helical frame' ? ? 1 0 0 0 1 0 0 0 1 0 0 0 1 'helical symmetry operation' ? ? 0.893465 0.449132 0 -0.449132 0.893465 0 0 0 1 0 0 -55.2 2 'helical symmetry operation' ? ? -0.973002 -0.230797 0 0.230797 -0.973002 0 0 0 1 0 0 -27.6 3 'helical symmetry operation' ? ? 1 0 0 0 1 0 0 0 1 0 0 0 4 'helical symmetry operation' ? ? -0.973002 0.230797 0 -0.230797 -0.973002 0 0 0 1 0 0 27.6 5 'helical symmetry operation' ? ? 0.893465 -0.449132 0 0.449132 0.893465 0 0 0 1 0 0 55.2 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 72 A GLU 72 1_555 A N HIC 73 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale2 A C HIC 73 A HIC 73 1_555 A N GLY 74 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3MFP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id ADP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 376 _pdbx_nonpoly_scheme.auth_seq_num 376 _pdbx_nonpoly_scheme.pdb_mon_id ADP _pdbx_nonpoly_scheme.auth_mon_id ADP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 -9.788 12.303 -53.137 1 10.75 ? PB ADP 376 A 1 HETATM 2 O O1B ADP . . . B 2 -10.248 13.261 -52.12 1 11.21 ? O1B ADP 376 A 1 HETATM 3 O O2B ADP . . . B 2 -9.272 13.083 -54.303 1 12.6 ? O2B ADP 376 A 1 HETATM 4 O O3B ADP . . . B 2 -8.868 11.165 -52.632 1 10.01 ? O3B ADP 376 A 1 HETATM 5 P PA ADP . . . B 2 -12.658 11.895 -53.605 1 11.15 ? PA ADP 376 A 1 HETATM 6 O O1A ADP . . . B 2 -13.298 11.713 -52.29 1 11.64 ? O1A ADP 376 A 1 HETATM 7 O O2A ADP . . . B 2 -12.868 13.235 -54.227 1 11.43 ? O2A ADP 376 A 1 HETATM 8 O O3A ADP . . . B 2 -11.115 11.558 -53.593 1 10.78 ? O3A ADP 376 A 1 HETATM 9 O O5' ADP . . . B 2 -13.295 10.746 -54.52 1 11.12 ? O5' ADP 376 A 1 HETATM 10 C C5' ADP . . . B 2 -12.879 10.7 -55.93 1 12.09 ? C5' ADP 376 A 1 HETATM 11 C C4' ADP . . . B 2 -12.999 9.233 -56.352 1 11.12 ? C4' ADP 376 A 1 HETATM 12 O O4' ADP . . . B 2 -14.38 8.828 -56.138 1 12.23 ? O4' ADP 376 A 1 HETATM 13 C C3' ADP . . . B 2 -12.684 9.039 -57.862 1 10.3 ? C3' ADP 376 A 1 HETATM 14 O O3' ADP . . . B 2 -11.967 7.785 -57.968 1 11.87 ? O3' ADP 376 A 1 HETATM 15 C C2' ADP . . . B 2 -14.088 8.855 -58.458 1 11.27 ? C2' ADP 376 A 1 HETATM 16 O O2' ADP . . . B 2 -14.101 8.054 -59.653 1 10.52 ? O2' ADP 376 A 1 HETATM 17 C C1' ADP . . . B 2 -14.877 8.281 -57.315 1 12.57 ? C1' ADP 376 A 1 HETATM 18 N N9 ADP . . . B 2 -16.318 8.445 -57.404 1 10.99 ? N9 ADP 376 A 1 HETATM 19 C C8 ADP . . . B 2 -17.034 9.591 -57.545 1 12.84 ? C8 ADP 376 A 1 HETATM 20 N N7 ADP . . . B 2 -18.33 9.452 -57.647 1 13.9 ? N7 ADP 376 A 1 HETATM 21 C C5 ADP . . . B 2 -18.474 8.137 -57.539 1 12.4 ? C5 ADP 376 A 1 HETATM 22 C C6 ADP . . . B 2 -19.62 7.363 -57.583 1 13.6 ? C6 ADP 376 A 1 HETATM 23 N N6 ADP . . . B 2 -20.845 7.886 -57.732 1 15.65 ? N6 ADP 376 A 1 HETATM 24 N N1 ADP . . . B 2 -19.443 6.055 -57.474 1 13.52 ? N1 ADP 376 A 1 HETATM 25 C C2 ADP . . . B 2 -18.186 5.482 -57.319 1 12.4 ? C2 ADP 376 A 1 HETATM 26 N N3 ADP . . . B 2 -17.039 6.149 -57.284 1 11.79 ? N3 ADP 376 A 1 HETATM 27 C C4 ADP . . . B 2 -17.284 7.466 -57.401 1 10.48 ? C4 ADP 376 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #