data_3MFY # _model_server_result.job_id -CPAbdMfeZRzzKgH9q7uYA _model_server_result.datetime_utc '2024-10-18 14:31:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mfy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":590}' # _entry.id 3MFY # _exptl.entry_id 3MFY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MFY _cell.length_a 127.535 _cell.length_b 127.535 _cell.length_c 106.785 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MFY _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 E N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 244 n n C1 H11 MPD sing 245 n n C1 H12 MPD sing 246 n n C1 H13 MPD sing 247 n n C2 O2 MPD sing 248 n n C2 CM MPD sing 249 n n C2 C3 MPD sing 250 n n O2 HO2 MPD sing 251 n n CM HM1 MPD sing 252 n n CM HM2 MPD sing 253 n n CM HM3 MPD sing 254 n n C3 C4 MPD sing 255 n n C3 H31 MPD sing 256 n n C3 H32 MPD sing 257 n n C4 O4 MPD sing 258 n n C4 C5 MPD sing 259 n n C4 H4 MPD sing 260 n n O4 HO4 MPD sing 261 n n C5 H51 MPD sing 262 n n C5 H52 MPD sing 263 n n C5 H53 MPD sing 264 n n # _atom_sites.entry_id 3MFY _atom_sites.fract_transf_matrix[1][1] 0.007841 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009365 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD A 1 589 1 MPD MPD . C 2 MPD A 1 590 1 MPD MPD . D 3 TRS A 1 591 1 TRS TRS . E 2 MPD A 1 592 1 MPD MPD . F 2 MPD A 1 593 1 MPD MPD . G 2 MPD A 1 594 1 MPD MPD . H 4 ACY A 1 595 1 ACY ACY . I 5 HOH A 1 596 1 HOH HOH . I 5 HOH A 2 597 2 HOH HOH . I 5 HOH A 3 598 3 HOH HOH . I 5 HOH A 4 599 4 HOH HOH . I 5 HOH A 5 600 5 HOH HOH . I 5 HOH A 6 601 6 HOH HOH . I 5 HOH A 7 602 7 HOH HOH . I 5 HOH A 8 603 8 HOH HOH . I 5 HOH A 9 604 9 HOH HOH . I 5 HOH A 10 605 10 HOH HOH . I 5 HOH A 11 606 11 HOH HOH . I 5 HOH A 12 607 12 HOH HOH . I 5 HOH A 13 608 13 HOH HOH . I 5 HOH A 14 609 14 HOH HOH . I 5 HOH A 15 610 15 HOH HOH . I 5 HOH A 16 611 16 HOH HOH . I 5 HOH A 17 612 17 HOH HOH . I 5 HOH A 18 613 18 HOH HOH . I 5 HOH A 19 614 19 HOH HOH . I 5 HOH A 20 615 20 HOH HOH . I 5 HOH A 21 616 21 HOH HOH . I 5 HOH A 22 617 22 HOH HOH . I 5 HOH A 23 618 23 HOH HOH . I 5 HOH A 24 619 24 HOH HOH . I 5 HOH A 25 620 25 HOH HOH . I 5 HOH A 26 621 26 HOH HOH . I 5 HOH A 27 622 27 HOH HOH . I 5 HOH A 28 623 28 HOH HOH . I 5 HOH A 29 624 29 HOH HOH . I 5 HOH A 30 625 30 HOH HOH . I 5 HOH A 31 626 31 HOH HOH . I 5 HOH A 32 627 32 HOH HOH . I 5 HOH A 33 628 33 HOH HOH . I 5 HOH A 34 629 34 HOH HOH . I 5 HOH A 35 630 35 HOH HOH . I 5 HOH A 36 631 36 HOH HOH . I 5 HOH A 37 632 37 HOH HOH . I 5 HOH A 38 633 38 HOH HOH . I 5 HOH A 39 634 39 HOH HOH . I 5 HOH A 40 635 40 HOH HOH . I 5 HOH A 41 636 41 HOH HOH . I 5 HOH A 42 637 42 HOH HOH . I 5 HOH A 43 638 43 HOH HOH . I 5 HOH A 44 639 44 HOH HOH . I 5 HOH A 45 640 45 HOH HOH . I 5 HOH A 46 641 46 HOH HOH . I 5 HOH A 47 642 47 HOH HOH . I 5 HOH A 48 643 48 HOH HOH . I 5 HOH A 49 644 49 HOH HOH . I 5 HOH A 50 645 50 HOH HOH . I 5 HOH A 51 646 51 HOH HOH . I 5 HOH A 52 647 52 HOH HOH . I 5 HOH A 53 648 53 HOH HOH . I 5 HOH A 54 649 54 HOH HOH . I 5 HOH A 55 650 55 HOH HOH . I 5 HOH A 56 651 56 HOH HOH . I 5 HOH A 57 652 57 HOH HOH . I 5 HOH A 58 653 58 HOH HOH . I 5 HOH A 59 654 59 HOH HOH . I 5 HOH A 60 655 60 HOH HOH . I 5 HOH A 61 656 61 HOH HOH . I 5 HOH A 62 657 62 HOH HOH . I 5 HOH A 63 658 63 HOH HOH . I 5 HOH A 64 659 64 HOH HOH . I 5 HOH A 65 660 65 HOH HOH . I 5 HOH A 66 661 66 HOH HOH . I 5 HOH A 67 662 67 HOH HOH . I 5 HOH A 68 663 68 HOH HOH . I 5 HOH A 69 664 69 HOH HOH . I 5 HOH A 70 665 70 HOH HOH . I 5 HOH A 71 666 71 HOH HOH . I 5 HOH A 72 667 72 HOH HOH . I 5 HOH A 73 668 73 HOH HOH . I 5 HOH A 74 669 74 HOH HOH . I 5 HOH A 75 670 75 HOH HOH . I 5 HOH A 76 671 76 HOH HOH . I 5 HOH A 77 672 77 HOH HOH . I 5 HOH A 78 673 78 HOH HOH . I 5 HOH A 79 674 79 HOH HOH . I 5 HOH A 80 675 80 HOH HOH . I 5 HOH A 81 676 81 HOH HOH . I 5 HOH A 82 677 82 HOH HOH . I 5 HOH A 83 678 83 HOH HOH . I 5 HOH A 84 679 84 HOH HOH . I 5 HOH A 85 680 85 HOH HOH . I 5 HOH A 86 681 86 HOH HOH . I 5 HOH A 87 682 87 HOH HOH . I 5 HOH A 88 683 88 HOH HOH . I 5 HOH A 89 684 89 HOH HOH . I 5 HOH A 90 685 90 HOH HOH . I 5 HOH A 91 686 91 HOH HOH . I 5 HOH A 92 687 92 HOH HOH . I 5 HOH A 93 688 93 HOH HOH . I 5 HOH A 94 689 94 HOH HOH . I 5 HOH A 95 690 95 HOH HOH . I 5 HOH A 96 691 96 HOH HOH . I 5 HOH A 97 692 97 HOH HOH . I 5 HOH A 98 693 98 HOH HOH . I 5 HOH A 99 694 99 HOH HOH . I 5 HOH A 100 695 100 HOH HOH . I 5 HOH A 101 696 101 HOH HOH . I 5 HOH A 102 697 102 HOH HOH . I 5 HOH A 103 698 103 HOH HOH . I 5 HOH A 104 699 104 HOH HOH . I 5 HOH A 105 700 105 HOH HOH . I 5 HOH A 106 701 106 HOH HOH . I 5 HOH A 107 702 107 HOH HOH . I 5 HOH A 108 703 108 HOH HOH . I 5 HOH A 109 704 109 HOH HOH . I 5 HOH A 110 705 110 HOH HOH . I 5 HOH A 111 706 111 HOH HOH . I 5 HOH A 112 707 112 HOH HOH . I 5 HOH A 113 708 113 HOH HOH . I 5 HOH A 114 709 114 HOH HOH . I 5 HOH A 115 710 115 HOH HOH . I 5 HOH A 116 711 116 HOH HOH . I 5 HOH A 117 712 117 HOH HOH . I 5 HOH A 118 713 118 HOH HOH . I 5 HOH A 119 714 119 HOH HOH . I 5 HOH A 120 715 120 HOH HOH . I 5 HOH A 121 716 121 HOH HOH . I 5 HOH A 122 717 122 HOH HOH . I 5 HOH A 123 718 123 HOH HOH . I 5 HOH A 124 719 124 HOH HOH . I 5 HOH A 125 720 125 HOH HOH . I 5 HOH A 126 721 126 HOH HOH . I 5 HOH A 127 722 127 HOH HOH . I 5 HOH A 128 723 128 HOH HOH . I 5 HOH A 129 724 129 HOH HOH . I 5 HOH A 130 725 130 HOH HOH . I 5 HOH A 131 726 131 HOH HOH . I 5 HOH A 132 727 132 HOH HOH . I 5 HOH A 133 728 133 HOH HOH . I 5 HOH A 134 729 134 HOH HOH . I 5 HOH A 135 730 135 HOH HOH . I 5 HOH A 136 731 136 HOH HOH . I 5 HOH A 137 732 137 HOH HOH . I 5 HOH A 138 733 138 HOH HOH . I 5 HOH A 139 734 139 HOH HOH . I 5 HOH A 140 735 140 HOH HOH . I 5 HOH A 141 736 141 HOH HOH . I 5 HOH A 142 737 142 HOH HOH . I 5 HOH A 143 738 143 HOH HOH . I 5 HOH A 144 739 144 HOH HOH . I 5 HOH A 145 740 145 HOH HOH . I 5 HOH A 146 741 146 HOH HOH . I 5 HOH A 147 742 147 HOH HOH . I 5 HOH A 148 743 148 HOH HOH . I 5 HOH A 149 744 149 HOH HOH . I 5 HOH A 150 745 150 HOH HOH . I 5 HOH A 151 746 151 HOH HOH . I 5 HOH A 152 747 152 HOH HOH . I 5 HOH A 153 748 153 HOH HOH . I 5 HOH A 154 749 154 HOH HOH . I 5 HOH A 155 750 155 HOH HOH . I 5 HOH A 156 751 156 HOH HOH . I 5 HOH A 157 752 157 HOH HOH . I 5 HOH A 158 753 158 HOH HOH . I 5 HOH A 159 754 159 HOH HOH . I 5 HOH A 160 755 160 HOH HOH . I 5 HOH A 161 756 161 HOH HOH . I 5 HOH A 162 757 162 HOH HOH . I 5 HOH A 163 758 163 HOH HOH . I 5 HOH A 164 759 164 HOH HOH . I 5 HOH A 165 760 165 HOH HOH . I 5 HOH A 166 761 166 HOH HOH . I 5 HOH A 167 762 167 HOH HOH . I 5 HOH A 168 763 168 HOH HOH . I 5 HOH A 169 764 169 HOH HOH . I 5 HOH A 170 765 170 HOH HOH . I 5 HOH A 171 766 171 HOH HOH . I 5 HOH A 172 767 172 HOH HOH . I 5 HOH A 173 768 173 HOH HOH . I 5 HOH A 174 769 174 HOH HOH . I 5 HOH A 175 770 175 HOH HOH . I 5 HOH A 176 771 176 HOH HOH . I 5 HOH A 177 772 177 HOH HOH . I 5 HOH A 178 773 178 HOH HOH . I 5 HOH A 179 774 179 HOH HOH . I 5 HOH A 180 775 180 HOH HOH . I 5 HOH A 181 776 181 HOH HOH . I 5 HOH A 182 777 182 HOH HOH . I 5 HOH A 183 778 183 HOH HOH . I 5 HOH A 184 779 184 HOH HOH . I 5 HOH A 185 780 185 HOH HOH . I 5 HOH A 186 781 186 HOH HOH . I 5 HOH A 187 782 187 HOH HOH . I 5 HOH A 188 783 188 HOH HOH . I 5 HOH A 189 784 189 HOH HOH . I 5 HOH A 190 785 190 HOH HOH . I 5 HOH A 191 786 191 HOH HOH . I 5 HOH A 192 787 192 HOH HOH . I 5 HOH A 193 788 193 HOH HOH . I 5 HOH A 194 789 194 HOH HOH . I 5 HOH A 195 790 195 HOH HOH . I 5 HOH A 196 791 196 HOH HOH . I 5 HOH A 197 792 197 HOH HOH . I 5 HOH A 198 793 198 HOH HOH . I 5 HOH A 199 794 199 HOH HOH . I 5 HOH A 200 795 200 HOH HOH . I 5 HOH A 201 796 201 HOH HOH . I 5 HOH A 202 797 202 HOH HOH . I 5 HOH A 203 798 203 HOH HOH . I 5 HOH A 204 799 204 HOH HOH . I 5 HOH A 205 800 205 HOH HOH . I 5 HOH A 206 801 206 HOH HOH . I 5 HOH A 207 802 207 HOH HOH . I 5 HOH A 208 803 208 HOH HOH . I 5 HOH A 209 804 209 HOH HOH . I 5 HOH A 210 805 210 HOH HOH . I 5 HOH A 211 806 211 HOH HOH . I 5 HOH A 212 807 212 HOH HOH . I 5 HOH A 213 808 213 HOH HOH . I 5 HOH A 214 809 214 HOH HOH . I 5 HOH A 215 810 215 HOH HOH . I 5 HOH A 216 811 216 HOH HOH . I 5 HOH A 217 812 217 HOH HOH . I 5 HOH A 218 813 218 HOH HOH . I 5 HOH A 219 814 219 HOH HOH . I 5 HOH A 220 815 220 HOH HOH . I 5 HOH A 221 816 221 HOH HOH . I 5 HOH A 222 817 222 HOH HOH . I 5 HOH A 223 818 223 HOH HOH . I 5 HOH A 224 819 224 HOH HOH . I 5 HOH A 225 820 225 HOH HOH . I 5 HOH A 226 821 226 HOH HOH . I 5 HOH A 227 822 227 HOH HOH . I 5 HOH A 228 823 228 HOH HOH . I 5 HOH A 229 824 229 HOH HOH . I 5 HOH A 230 825 230 HOH HOH . I 5 HOH A 231 826 231 HOH HOH . I 5 HOH A 232 827 232 HOH HOH . I 5 HOH A 233 828 233 HOH HOH . I 5 HOH A 234 829 234 HOH HOH . I 5 HOH A 235 830 235 HOH HOH . I 5 HOH A 236 831 236 HOH HOH . I 5 HOH A 237 832 237 HOH HOH . I 5 HOH A 238 833 238 HOH HOH . I 5 HOH A 239 834 239 HOH HOH . I 5 HOH A 240 835 240 HOH HOH . I 5 HOH A 241 836 241 HOH HOH . I 5 HOH A 242 837 242 HOH HOH . I 5 HOH A 243 838 243 HOH HOH . I 5 HOH A 244 839 244 HOH HOH . I 5 HOH A 245 840 245 HOH HOH . I 5 HOH A 246 841 246 HOH HOH . I 5 HOH A 247 842 247 HOH HOH . I 5 HOH A 248 843 248 HOH HOH . I 5 HOH A 249 844 249 HOH HOH . I 5 HOH A 250 845 250 HOH HOH . I 5 HOH A 251 846 251 HOH HOH . I 5 HOH A 252 847 252 HOH HOH . I 5 HOH A 253 848 253 HOH HOH . I 5 HOH A 254 849 254 HOH HOH . I 5 HOH A 255 850 255 HOH HOH . I 5 HOH A 256 851 256 HOH HOH . I 5 HOH A 257 852 257 HOH HOH . I 5 HOH A 258 853 258 HOH HOH . I 5 HOH A 259 854 259 HOH HOH . I 5 HOH A 260 855 260 HOH HOH . I 5 HOH A 261 856 261 HOH HOH . I 5 HOH A 262 857 262 HOH HOH . I 5 HOH A 263 858 263 HOH HOH . I 5 HOH A 264 859 264 HOH HOH . I 5 HOH A 265 860 265 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 2 -51.331 -13.694 -5.349 1 81.49 ? C1 MPD 590 A 1 HETATM 2 C C2 MPD . . . C 2 -50.266 -14.376 -6.2 1 82.81 ? C2 MPD 590 A 1 HETATM 3 O O2 MPD . . . C 2 -49.997 -15.688 -5.645 1 83.58 ? O2 MPD 590 A 1 HETATM 4 C CM MPD . . . C 2 -50.761 -14.542 -7.631 1 83.3 ? CM MPD 590 A 1 HETATM 5 C C3 MPD . . . C 2 -48.976 -13.563 -6.179 1 81.34 ? C3 MPD 590 A 1 HETATM 6 C C4 MPD . . . C 2 -47.764 -14.441 -6.462 1 80.51 ? C4 MPD 590 A 1 HETATM 7 O O4 MPD . . . C 2 -47.999 -15.024 -7.733 1 78.11 ? O4 MPD 590 A 1 HETATM 8 C C5 MPD . . . C 2 -46.441 -13.698 -6.5 1 81.53 ? C5 MPD 590 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #