data_3MG2 # _model_server_result.job_id TpQH9EfHb9_C08A9oShgrg _model_server_result.datetime_utc '2024-11-15 12:55:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mg2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":351}' # _entry.id 3MG2 # _exptl.entry_id 3MG2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 550.856 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description beta,beta-caroten-4-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3MG2 _cell.length_a 83.188 _cell.length_b 83.188 _cell.length_c 87.974 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MG2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,C,E 2 1 B,D,F 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C40 H54 O' _chem_comp.formula_weight 550.856 _chem_comp.id ECH _chem_comp.mon_nstd_flag . _chem_comp.name beta,beta-caroten-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms echinenone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 ECH sing 83 n n C1 C32 ECH sing 84 n n C1 C6 ECH sing 85 n n C1 C31 ECH sing 86 n n C3 C2 ECH sing 87 n n C2 H2 ECH sing 88 n n C2 H2A ECH sing 89 n n C3 C4 ECH sing 90 n n C3 H3 ECH sing 91 n n C3 H3A ECH sing 92 n n C4 C5 ECH sing 93 n n C4 H4 ECH sing 94 n n C4 H4A ECH sing 95 n n C5 C33 ECH sing 96 n n C5 C6 ECH doub 97 n n C6 C7 ECH sing 98 n n C7 C8 ECH doub 99 e n C7 H7 ECH sing 100 n n C8 C9 ECH sing 101 n n C8 H8 ECH sing 102 n n C9 C10 ECH doub 103 e n C9 C34 ECH sing 104 n n C10 C11 ECH sing 105 n n C10 H10 ECH sing 106 n n C11 C12 ECH doub 107 e n C11 H11 ECH sing 108 n n C12 C13 ECH sing 109 n n C12 H12 ECH sing 110 n n C13 C14 ECH doub 111 e n C13 C35 ECH sing 112 n n C14 C15 ECH sing 113 n n C14 H14 ECH sing 114 n n C15 C16 ECH doub 115 e n C15 H15 ECH sing 116 n n C16 C17 ECH sing 117 n n C16 H16 ECH sing 118 n n C17 C18 ECH doub 119 e n C17 H17 ECH sing 120 n n C36 C18 ECH sing 121 n n C18 C19 ECH sing 122 e n C19 C20 ECH doub 123 n n C19 H19 ECH sing 124 n n C20 C21 ECH sing 125 n n C20 H20 ECH sing 126 e n C21 C22 ECH doub 127 n n C21 H21 ECH sing 128 n n C37 C22 ECH sing 129 e n C22 C23 ECH sing 130 n n C23 C24 ECH doub 131 n n C23 H23 ECH sing 132 n n C24 C25 ECH sing 133 n n C24 H24 ECH sing 134 n n C30 C25 ECH sing 135 n n C25 C26 ECH doub 136 n n C26 C38 ECH sing 137 n n C26 C27 ECH sing 138 n n C28 C27 ECH sing 139 n n C27 O27 ECH doub 140 n n C29 C28 ECH sing 141 n n C28 H28 ECH sing 142 n n C28 H28A ECH sing 143 n n C30 C29 ECH sing 144 n n C29 H29 ECH sing 145 n n C29 H29A ECH sing 146 n n C39 C30 ECH sing 147 n n C40 C30 ECH sing 148 n n C31 H31 ECH sing 149 n n C31 H31A ECH sing 150 n n C31 H31B ECH sing 151 n n C32 H32 ECH sing 152 n n C32 H32A ECH sing 153 n n C32 H32B ECH sing 154 n n C33 H33 ECH sing 155 n n C33 H33A ECH sing 156 n n C33 H33B ECH sing 157 n n C34 H34 ECH sing 158 n n C34 H34A ECH sing 159 n n C34 H34B ECH sing 160 n n C35 H35 ECH sing 161 n n C35 H35A ECH sing 162 n n C35 H35B ECH sing 163 n n C36 H36 ECH sing 164 n n C36 H36A ECH sing 165 n n C36 H36B ECH sing 166 n n C37 H37 ECH sing 167 n n C37 H37A ECH sing 168 n n C37 H37B ECH sing 169 n n C38 H38 ECH sing 170 n n C38 H38A ECH sing 171 n n C38 H38B ECH sing 172 n n C39 H39 ECH sing 173 n n C39 H39A ECH sing 174 n n C39 H39B ECH sing 175 n n C40 H40 ECH sing 176 n n C40 H40A ECH sing 177 n n C40 H40B ECH sing 178 n n # _atom_sites.entry_id 3MG2 _atom_sites.fract_transf_matrix[1][1] 0.012021 _atom_sites.fract_transf_matrix[1][2] 0.00694 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013881 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011367 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ECH A 1 351 351 ECH ECH . D 2 ECH B 1 351 351 ECH ECH . E 3 HOH A 1 1001 1001 HOH HOH . E 3 HOH A 2 1002 1002 HOH HOH . E 3 HOH A 3 1003 1003 HOH HOH . E 3 HOH A 4 1011 1011 HOH HOH . E 3 HOH A 5 1012 1012 HOH HOH . E 3 HOH A 6 1013 1013 HOH HOH . E 3 HOH A 7 1015 1015 HOH HOH . E 3 HOH A 8 1016 1016 HOH HOH . E 3 HOH A 9 1019 1019 HOH HOH . E 3 HOH A 10 1021 1021 HOH HOH . E 3 HOH A 11 1022 1022 HOH HOH . E 3 HOH A 12 1025 1025 HOH HOH . E 3 HOH A 13 1026 1026 HOH HOH . E 3 HOH A 14 1028 1028 HOH HOH . E 3 HOH A 15 1032 1032 HOH HOH . E 3 HOH A 16 1033 1033 HOH HOH . E 3 HOH A 17 1035 1035 HOH HOH . E 3 HOH A 18 1036 1036 HOH HOH . E 3 HOH A 19 1040 1040 HOH HOH . E 3 HOH A 20 1043 1043 HOH HOH . E 3 HOH A 21 1044 1044 HOH HOH . E 3 HOH A 22 1047 1047 HOH HOH . E 3 HOH A 23 1048 1048 HOH HOH . E 3 HOH A 24 1050 1050 HOH HOH . E 3 HOH A 25 1051 1051 HOH HOH . E 3 HOH A 26 1052 1052 HOH HOH . E 3 HOH A 27 1055 1055 HOH HOH . E 3 HOH A 28 1056 1056 HOH HOH . E 3 HOH A 29 1057 1057 HOH HOH . E 3 HOH A 30 1060 1060 HOH HOH . E 3 HOH A 31 1066 1066 HOH HOH . E 3 HOH A 32 1067 1067 HOH HOH . E 3 HOH A 33 1068 1068 HOH HOH . E 3 HOH A 34 1073 1073 HOH HOH . E 3 HOH A 35 1074 1074 HOH HOH . E 3 HOH A 36 1076 1076 HOH HOH . E 3 HOH A 37 1081 1081 HOH HOH . E 3 HOH A 38 1082 1082 HOH HOH . E 3 HOH A 39 1084 1084 HOH HOH . E 3 HOH A 40 1087 1087 HOH HOH . E 3 HOH A 41 1088 1088 HOH HOH . E 3 HOH A 42 1090 1090 HOH HOH . E 3 HOH A 43 1091 1091 HOH HOH . E 3 HOH A 44 1095 1095 HOH HOH . E 3 HOH A 45 1097 1097 HOH HOH . E 3 HOH A 46 1098 1098 HOH HOH . E 3 HOH A 47 1099 1099 HOH HOH . E 3 HOH A 48 1101 1101 HOH HOH . E 3 HOH A 49 1102 1102 HOH HOH . E 3 HOH A 50 1103 1103 HOH HOH . E 3 HOH A 51 1106 1106 HOH HOH . E 3 HOH A 52 1107 1107 HOH HOH . E 3 HOH A 53 1109 1109 HOH HOH . E 3 HOH A 54 1112 1112 HOH HOH . E 3 HOH A 55 1113 1113 HOH HOH . E 3 HOH A 56 1117 1117 HOH HOH . E 3 HOH A 57 1122 1122 HOH HOH . E 3 HOH A 58 1123 1123 HOH HOH . E 3 HOH A 59 1126 1126 HOH HOH . E 3 HOH A 60 1132 1132 HOH HOH . E 3 HOH A 61 1133 1133 HOH HOH . E 3 HOH A 62 1134 1134 HOH HOH . E 3 HOH A 63 1135 1135 HOH HOH . E 3 HOH A 64 1142 1142 HOH HOH . E 3 HOH A 65 1144 1144 HOH HOH . E 3 HOH A 66 1146 1146 HOH HOH . E 3 HOH A 67 1149 1149 HOH HOH . F 3 HOH B 1 1004 1004 HOH HOH . F 3 HOH B 2 1005 1005 HOH HOH . F 3 HOH B 3 1006 1006 HOH HOH . F 3 HOH B 4 1007 1007 HOH HOH . F 3 HOH B 5 1008 1008 HOH HOH . F 3 HOH B 6 1009 1009 HOH HOH . F 3 HOH B 7 1010 1010 HOH HOH . F 3 HOH B 8 1014 1014 HOH HOH . F 3 HOH B 9 1017 1017 HOH HOH . F 3 HOH B 10 1018 1018 HOH HOH . F 3 HOH B 11 1020 1020 HOH HOH . F 3 HOH B 12 1023 1023 HOH HOH . F 3 HOH B 13 1024 1024 HOH HOH . F 3 HOH B 14 1027 1027 HOH HOH . F 3 HOH B 15 1029 1029 HOH HOH . F 3 HOH B 16 1030 1030 HOH HOH . F 3 HOH B 17 1031 1031 HOH HOH . F 3 HOH B 18 1034 1034 HOH HOH . F 3 HOH B 19 1037 1037 HOH HOH . F 3 HOH B 20 1038 1038 HOH HOH . F 3 HOH B 21 1039 1039 HOH HOH . F 3 HOH B 22 1041 1041 HOH HOH . F 3 HOH B 23 1042 1042 HOH HOH . F 3 HOH B 24 1045 1045 HOH HOH . F 3 HOH B 25 1046 1046 HOH HOH . F 3 HOH B 26 1049 1049 HOH HOH . F 3 HOH B 27 1053 1053 HOH HOH . F 3 HOH B 28 1054 1054 HOH HOH . F 3 HOH B 29 1058 1058 HOH HOH . F 3 HOH B 30 1059 1059 HOH HOH . F 3 HOH B 31 1061 1061 HOH HOH . F 3 HOH B 32 1062 1062 HOH HOH . F 3 HOH B 33 1063 1063 HOH HOH . F 3 HOH B 34 1064 1064 HOH HOH . F 3 HOH B 35 1065 1065 HOH HOH . F 3 HOH B 36 1069 1069 HOH HOH . F 3 HOH B 37 1070 1070 HOH HOH . F 3 HOH B 38 1071 1071 HOH HOH . F 3 HOH B 39 1072 1072 HOH HOH . F 3 HOH B 40 1075 1075 HOH HOH . F 3 HOH B 41 1077 1077 HOH HOH . F 3 HOH B 42 1078 1078 HOH HOH . F 3 HOH B 43 1079 1079 HOH HOH . F 3 HOH B 44 1080 1080 HOH HOH . F 3 HOH B 45 1083 1083 HOH HOH . F 3 HOH B 46 1085 1085 HOH HOH . F 3 HOH B 47 1086 1086 HOH HOH . F 3 HOH B 48 1089 1089 HOH HOH . F 3 HOH B 49 1092 1092 HOH HOH . F 3 HOH B 50 1093 1093 HOH HOH . F 3 HOH B 51 1094 1094 HOH HOH . F 3 HOH B 52 1096 1096 HOH HOH . F 3 HOH B 53 1100 1100 HOH HOH . F 3 HOH B 54 1104 1104 HOH HOH . F 3 HOH B 55 1105 1105 HOH HOH . F 3 HOH B 56 1108 1108 HOH HOH . F 3 HOH B 57 1110 1110 HOH HOH . F 3 HOH B 58 1111 1111 HOH HOH . F 3 HOH B 59 1114 1114 HOH HOH . F 3 HOH B 60 1115 1115 HOH HOH . F 3 HOH B 61 1116 1116 HOH HOH . F 3 HOH B 62 1118 1118 HOH HOH . F 3 HOH B 63 1119 1119 HOH HOH . F 3 HOH B 64 1120 1120 HOH HOH . F 3 HOH B 65 1121 1121 HOH HOH . F 3 HOH B 66 1124 1124 HOH HOH . F 3 HOH B 67 1125 1125 HOH HOH . F 3 HOH B 68 1127 1127 HOH HOH . F 3 HOH B 69 1128 1128 HOH HOH . F 3 HOH B 70 1129 1129 HOH HOH . F 3 HOH B 71 1130 1130 HOH HOH . F 3 HOH B 72 1131 1131 HOH HOH . F 3 HOH B 73 1136 1136 HOH HOH . F 3 HOH B 74 1137 1137 HOH HOH . F 3 HOH B 75 1138 1138 HOH HOH . F 3 HOH B 76 1139 1139 HOH HOH . F 3 HOH B 77 1140 1140 HOH HOH . F 3 HOH B 78 1141 1141 HOH HOH . F 3 HOH B 79 1143 1143 HOH HOH . F 3 HOH B 80 1145 1145 HOH HOH . F 3 HOH B 81 1147 1147 HOH HOH . F 3 HOH B 82 1148 1148 HOH HOH . F 3 HOH B 83 1150 1150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ECH . . . D 2 -19.367 -21.068 8.381 1 34.21 ? C1 ECH 351 B 1 HETATM 2 C C2 ECH . . . D 2 -19.168 -20.913 6.897 1 32.41 ? C2 ECH 351 B 1 HETATM 3 C C3 ECH . . . D 2 -20.447 -20.546 6.179 1 33.49 ? C3 ECH 351 B 1 HETATM 4 C C4 ECH . . . D 2 -21.013 -19.244 6.657 1 31 ? C4 ECH 351 B 1 HETATM 5 C C5 ECH . . . D 2 -20.754 -18.976 8.154 1 30.13 ? C5 ECH 351 B 1 HETATM 6 C C6 ECH . . . D 2 -20.256 -19.949 8.968 1 31.89 ? C6 ECH 351 B 1 HETATM 7 C C7 ECH . . . D 2 -20.284 -19.828 10.503 1 31.47 ? C7 ECH 351 B 1 HETATM 8 C C8 ECH . . . D 2 -19.638 -18.852 11.135 1 30.06 ? C8 ECH 351 B 1 HETATM 9 C C9 ECH . . . D 2 -19.753 -18.697 12.669 1 37.31 ? C9 ECH 351 B 1 HETATM 10 C C10 ECH . . . D 2 -19.174 -17.644 13.258 1 31.87 ? C10 ECH 351 B 1 HETATM 11 C C11 ECH . . . D 2 -19.382 -17.334 14.765 1 27.56 ? C11 ECH 351 B 1 HETATM 12 C C12 ECH . . . D 2 -18.811 -16.219 15.253 1 33.4 ? C12 ECH 351 B 1 HETATM 13 C C13 ECH . . . D 2 -19.27 -15.592 16.597 1 35.52 ? C13 ECH 351 B 1 HETATM 14 C C14 ECH . . . D 2 -18.792 -14.389 16.921 1 26.77 ? C14 ECH 351 B 1 HETATM 15 C C15 ECH . . . D 2 -19.242 -13.68 18.22 1 28.92 ? C15 ECH 351 B 1 HETATM 16 C C16 ECH . . . D 2 -18.869 -12.418 18.439 1 29.39 ? C16 ECH 351 B 1 HETATM 17 C C17 ECH . . . D 2 -19.48 -11.631 19.62 1 25.94 ? C17 ECH 351 B 1 HETATM 18 C C18 ECH . . . D 2 -19.109 -10.367 19.858 1 28.08 ? C18 ECH 351 B 1 HETATM 19 C C19 ECH . . . D 2 -19.592 -9.676 21.154 1 26.95 ? C19 ECH 351 B 1 HETATM 20 C C20 ECH . . . D 2 -19.204 -8.43 21.464 1 26.38 ? C20 ECH 351 B 1 HETATM 21 C C21 ECH . . . D 2 -19.97 -7.735 22.616 1 30.15 ? C21 ECH 351 B 1 HETATM 22 C C22 ECH . . . D 2 -19.692 -6.507 23.063 1 26.35 ? C22 ECH 351 B 1 HETATM 23 C C23 ECH . . . D 2 -20.791 -5.798 23.88 1 27.5 ? C23 ECH 351 B 1 HETATM 24 C C24 ECH . . . D 2 -20.543 -4.66 24.519 1 26.46 ? C24 ECH 351 B 1 HETATM 25 C C25 ECH . . . D 2 -21.635 -3.996 25.382 1 26.58 ? C25 ECH 351 B 1 HETATM 26 C C26 ECH . . . D 2 -21.197 -3.204 26.363 1 26.25 ? C26 ECH 351 B 1 HETATM 27 C C27 ECH . . . D 2 -22.131 -2.178 27.017 1 27.74 ? C27 ECH 351 B 1 HETATM 28 O O27 ECH . . . D 2 -21.711 -1.448 27.845 1 26.98 ? O27 ECH 351 B 1 HETATM 29 C C28 ECH . . . D 2 -23.565 -2.086 26.59 1 30.05 ? C28 ECH 351 B 1 HETATM 30 C C29 ECH . . . D 2 -24.023 -3.325 25.887 1 28.35 ? C29 ECH 351 B 1 HETATM 31 C C30 ECH . . . D 2 -23.054 -3.754 24.79 1 31.54 ? C30 ECH 351 B 1 HETATM 32 C C31 ECH . . . D 2 -18.006 -21.039 9.069 1 32.54 ? C31 ECH 351 B 1 HETATM 33 C C32 ECH . . . D 2 -20.039 -22.403 8.67 1 35.68 ? C32 ECH 351 B 1 HETATM 34 C C33 ECH . . . D 2 -21.293 -17.674 8.736 1 27.18 ? C33 ECH 351 B 1 HETATM 35 C C34 ECH . . . D 2 -20.417 -19.787 13.512 1 36.7 ? C34 ECH 351 B 1 HETATM 36 C C35 ECH . . . D 2 -19.939 -16.467 17.657 1 30.03 ? C35 ECH 351 B 1 HETATM 37 C C36 ECH . . . D 2 -18.257 -9.596 18.847 1 27.46 ? C36 ECH 351 B 1 HETATM 38 C C37 ECH . . . D 2 -18.457 -5.74 22.611 1 21.87 ? C37 ECH 351 B 1 HETATM 39 C C38 ECH . . . D 2 -19.944 -3.62 27.109 1 23.32 ? C38 ECH 351 B 1 HETATM 40 C C39 ECH . . . D 2 -22.989 -2.64 23.731 1 24.27 ? C39 ECH 351 B 1 HETATM 41 C C40 ECH . . . D 2 -23.613 -5.01 24.142 1 22.53 ? C40 ECH 351 B 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 41 #