data_3MG4
#
_model_server_result.job_id            VnZBz0XFKn4EXV9_pFQqgw 
_model_server_result.datetime_utc      '2024-12-03 13:31:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3mg4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"KA","auth_seq_id":213}' 
#
_entry.id    3MG4 
#
_exptl.entry_id    3MG4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              604.781 
_entity.id                          16 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-2-amino-N-[(1S)-1-({(1S)-1-[(4-methylbenzyl)carbamoyl]-3-phenylpropyl}carbamoyl)-3-phenylpropyl]-4-phenylbutanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.73 
_cell.angle_gamma         90 
_cell.entry_id            3MG4 
_cell.length_a            134.561 
_cell.length_b            300.791 
_cell.length_c            144.707 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3MG4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    28-meric 
_pdbx_struct_assembly.oligomeric_count      28 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 16 KA N N 
? 16 OA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 CA MG MG . D MG 2 1_555 D OE2 GLU 97 D GLU 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? 
metalc ? metalc2 CA MG MG . D MG 2 1_555 L OG SER 85 L SER 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? 
metalc ? metalc3 CA MG MG . D MG 2 1_555 L OG SER 88 L SER 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? 
metalc ? metalc4 EA MG MG . G MG 1 1_555 G OG1 THR 8 G THR 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc5 EA MG MG . G MG 1 1_555 G O TYR 119 G TYR 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc6 EA MG MG . G MG 1 1_555 G O ARG 122 G ARG 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? 
metalc ? metalc7 EA MG MG . G MG 1 1_555 G O MET 125 G MET 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc8 H O ILE 163 H ILE 163 1_555 GA MG MG . H MG 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc9 H O ASP 166 H ASP 166 1_555 GA MG MG . H MG 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc10 H O SER 169 H SER 169 1_555 GA MG MG . H MG 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc11 GA MG MG . H MG 224 1_555 Z OXT ASP 222 Z ASP 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? 
metalc ? metalc12 I O GLY 139 I GLY 128 1_555 HA MG MG . I MG 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? 
metalc ? metalc13 I OG SER 142 I SER 131 1_555 HA MG MG . I MG 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? 
metalc ? metalc14 I O ALA 174 I ALA 163 1_555 IA MG MG . I MG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc15 I O ASP 177 I ASP 166 1_555 IA MG MG . I MG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc16 I O SER 180 I SER 169 1_555 IA MG MG . I MG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? 
metalc ? metalc17 K O ALA 165 K ALA 163 1_555 JA MG MG . K MG 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc18 K O ASP 168 K ASP 166 1_555 JA MG MG . K MG 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? 
metalc ? metalc19 K O SER 171 K SER 169 1_555 JA MG MG . K MG 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? 
metalc ? metalc20 JA MG MG . K MG 212 1_555 W O ASP 204 W ASP 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc21 L O THR 192 L THR 163 1_555 MA MG MG . L MG 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc22 L O HIS 195 L HIS 166 1_555 MA MG MG . L MG 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc23 L O VAL 198 L VAL 169 1_555 MA MG MG . L MG 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? 
metalc ? metalc24 N O ILE 163 N ILE 163 1_555 NA MG MG . N MG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc25 N O SER 169 N SER 169 1_555 NA MG MG . N MG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? 
#
_chem_comp.formula           'C38 H44 N4 O3' 
_chem_comp.formula_weight    604.781 
_chem_comp.id                LXT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-2-amino-N-[(1S)-1-({(1S)-1-[(4-methylbenzyl)carbamoyl]-3-phenylpropyl}carbamoyl)-3-phenylpropyl]-4-phenylbutanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C4 C1 LXT sing 192 n n 
C3 C1 LXT sing 193 n n 
C1 N2 LXT sing 194 n n 
C1 H1 LXT sing 195 n n 
N2 C34 LXT sing 196 n n 
N2 HN2 LXT sing 197 n n 
C27 C3 LXT sing 198 n n 
C3 H3 LXT sing 199 n n 
C3 H3A LXT sing 200 n n 
N5 C4 LXT sing 201 n n 
O6 C4 LXT doub 202 n n 
C7 N5 LXT sing 203 n n 
N5 HN5 LXT sing 204 n n 
C9 C7 LXT sing 205 n n 
C7 C8 LXT sing 206 n n 
C7 H7 LXT sing 207 n n 
C20 C8 LXT sing 208 n n 
C8 H8 LXT sing 209 n n 
C8 H8A LXT sing 210 n n 
N11 C9 LXT sing 211 n n 
O10 C9 LXT doub 212 n n 
C12 N11 LXT sing 213 n n 
N11 HN11 LXT sing 214 n n 
C12 C13 LXT sing 215 n n 
C12 H12 LXT sing 216 n n 
C12 H12A LXT sing 217 n n 
C14 C13 LXT doub 218 n y 
C13 C18 LXT sing 219 n y 
C14 C15 LXT sing 220 n y 
C14 H14 LXT sing 221 n n 
C15 C16 LXT doub 222 n y 
C15 H15 LXT sing 223 n n 
C16 C19 LXT sing 224 n n 
C16 C17 LXT sing 225 n y 
C18 C17 LXT doub 226 n y 
C17 H17 LXT sing 227 n n 
C18 H18 LXT sing 228 n n 
C19 H19 LXT sing 229 n n 
C19 H19A LXT sing 230 n n 
C19 H19B LXT sing 231 n n 
C20 C21 LXT sing 232 n n 
C20 H20 LXT sing 233 n n 
C20 H20A LXT sing 234 n n 
C22 C21 LXT doub 235 n y 
C21 C26 LXT sing 236 n y 
C22 C23 LXT sing 237 n y 
C22 H22 LXT sing 238 n n 
C23 C24 LXT doub 239 n y 
C23 H23 LXT sing 240 n n 
C24 C25 LXT sing 241 n y 
C24 H24 LXT sing 242 n n 
C26 C25 LXT doub 243 n y 
C25 H25 LXT sing 244 n n 
C26 H26 LXT sing 245 n n 
C27 C28 LXT sing 246 n n 
C27 H27 LXT sing 247 n n 
C27 H27A LXT sing 248 n n 
C33 C28 LXT doub 249 n y 
C28 C29 LXT sing 250 n y 
C29 C30 LXT doub 251 n y 
C29 H29 LXT sing 252 n n 
C31 C30 LXT sing 253 n y 
C30 H30 LXT sing 254 n n 
C32 C31 LXT doub 255 n y 
C31 H31 LXT sing 256 n n 
C33 C32 LXT sing 257 n y 
C32 H32 LXT sing 258 n n 
C33 H33 LXT sing 259 n n 
O35 C34 LXT doub 260 n n 
C34 C36 LXT sing 261 n n 
C36 C37 LXT sing 262 n n 
C36 N38 LXT sing 263 n n 
C36 H36 LXT sing 264 n n 
C37 C41 LXT sing 265 n n 
C37 H37 LXT sing 266 n n 
C37 H37A LXT sing 267 n n 
N38 HN38 LXT sing 268 n n 
N38 HN3A LXT sing 269 n n 
C42 C41 LXT sing 270 n n 
C41 H41 LXT sing 271 n n 
C41 H41A LXT sing 272 n n 
C47 C42 LXT doub 273 n y 
C42 C43 LXT sing 274 n y 
C44 C43 LXT doub 275 n y 
C43 H43 LXT sing 276 n n 
C45 C44 LXT sing 277 n y 
C44 H44 LXT sing 278 n n 
C46 C45 LXT doub 279 n y 
C45 H45 LXT sing 280 n n 
C46 C47 LXT sing 281 n y 
C46 H46 LXT sing 282 n n 
C47 H47 LXT sing 283 n n 
#
_atom_sites.entry_id                     3MG4 
_atom_sites.fract_transf_matrix[1][1]    0.007432 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003113 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003325 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007492 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
CA 15 MG D 1 2 2 MG MG . 
DA 15 MG F 1 242 9 MG MG . 
EA 15 MG G 1 1 1 MG MG . 
FA 15 MG G 1 241 10 MG MG . 
GA 15 MG H 1 224 7 MG MG . 
HA 15 MG I 1 195 3 MG MG . 
IA 15 MG I 1 196 5 MG MG . 
JA 15 MG K 1 212 8 MG MG . 
KA 16 LXT K 1 213 1 LXT LXT . 
LA 17 MES K 1 214 1 MES MES . 
MA 15 MG L 1 195 4 MG MG . 
NA 15 MG N 1 188 6 MG MG . 
OA 16 LXT Y 1 212 1 LXT LXT . 
PA 17 MES Y 1 213 1 MES MES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LXT . . . KA 16 9.089 -137.689 19.568 1 80.08 ? C1 LXT 213 K 1 
HETATM 2 N N2 LXT . . . KA 16 9.614 -137.488 20.942 1 81.61 ? N2 LXT 213 K 1 
HETATM 3 C C3 LXT . . . KA 16 8.011 -136.622 19.274 1 81.33 ? C3 LXT 213 K 1 
HETATM 4 C C4 LXT . . . KA 16 10.22 -137.636 18.522 1 78.04 ? C4 LXT 213 K 1 
HETATM 5 N N5 LXT . . . KA 16 10.249 -138.688 17.696 1 75.63 ? N5 LXT 213 K 1 
HETATM 6 O O6 LXT . . . KA 16 11.014 -136.693 18.49 1 77.89 ? O6 LXT 213 K 1 
HETATM 7 C C7 LXT . . . KA 16 11.241 -138.889 16.62 1 73.7 ? C7 LXT 213 K 1 
HETATM 8 C C8 LXT . . . KA 16 11.945 -140.239 16.86 1 73.79 ? C8 LXT 213 K 1 
HETATM 9 C C9 LXT . . . KA 16 10.524 -138.829 15.263 1 72.08 ? C9 LXT 213 K 1 
HETATM 10 O O10 LXT . . . KA 16 9.51 -139.49 15.049 1 72.04 ? O10 LXT 213 K 1 
HETATM 11 N N11 LXT . . . KA 16 11.07 -137.997 14.378 1 70.6 ? N11 LXT 213 K 1 
HETATM 12 C C12 LXT . . . KA 16 10.506 -137.743 13.043 1 68.94 ? C12 LXT 213 K 1 
HETATM 13 C C13 LXT . . . KA 16 9.73 -136.425 13.138 1 68.39 ? C13 LXT 213 K 1 
HETATM 14 C C14 LXT . . . KA 16 10.221 -135.259 12.535 1 68.13 ? C14 LXT 213 K 1 
HETATM 15 C C15 LXT . . . KA 16 9.512 -134.055 12.643 1 67.27 ? C15 LXT 213 K 1 
HETATM 16 C C16 LXT . . . KA 16 8.315 -134.021 13.358 1 66.85 ? C16 LXT 213 K 1 
HETATM 17 C C17 LXT . . . KA 16 7.827 -135.181 13.961 1 67.39 ? C17 LXT 213 K 1 
HETATM 18 C C18 LXT . . . KA 16 8.531 -136.382 13.856 1 67.8 ? C18 LXT 213 K 1 
HETATM 19 C C19 LXT . . . KA 16 7.53 -132.721 13.486 1 66.2 ? C19 LXT 213 K 1 
HETATM 20 C C20 LXT . . . KA 16 13.417 -140.294 16.418 1 74.39 ? C20 LXT 213 K 1 
HETATM 21 C C21 LXT . . . KA 16 14.384 -139.336 17.139 1 75.43 ? C21 LXT 213 K 1 
HETATM 22 C C22 LXT . . . KA 16 15.611 -139.055 16.526 1 76.34 ? C22 LXT 213 K 1 
HETATM 23 C C23 LXT . . . KA 16 16.525 -138.19 17.134 1 77 ? C23 LXT 213 K 1 
HETATM 24 C C24 LXT . . . KA 16 16.208 -137.601 18.365 1 77.45 ? C24 LXT 213 K 1 
HETATM 25 C C25 LXT . . . KA 16 14.986 -137.88 18.987 1 76.64 ? C25 LXT 213 K 1 
HETATM 26 C C26 LXT . . . KA 16 14.081 -138.75 18.374 1 75.91 ? C26 LXT 213 K 1 
HETATM 27 C C27 LXT . . . KA 16 7.025 -137.036 18.165 1 82.73 ? C27 LXT 213 K 1 
HETATM 28 C C28 LXT . . . KA 16 5.623 -136.456 18.418 1 84.36 ? C28 LXT 213 K 1 
HETATM 29 C C29 LXT . . . KA 16 4.694 -137.166 19.199 1 85.38 ? C29 LXT 213 K 1 
HETATM 30 C C30 LXT . . . KA 16 3.413 -136.654 19.447 1 85.16 ? C30 LXT 213 K 1 
HETATM 31 C C31 LXT . . . KA 16 3.063 -135.418 18.904 1 84.69 ? C31 LXT 213 K 1 
HETATM 32 C C32 LXT . . . KA 16 3.986 -134.71 18.125 1 84.7 ? C32 LXT 213 K 1 
HETATM 33 C C33 LXT . . . KA 16 5.266 -135.218 17.877 1 84.26 ? C33 LXT 213 K 1 
HETATM 34 C C34 LXT . . . KA 16 10.587 -138.202 21.532 1 83.07 ? C34 LXT 213 K 1 
HETATM 35 O O35 LXT . . . KA 16 11.191 -139.142 21.012 1 83.18 ? O35 LXT 213 K 1 
HETATM 36 C C36 LXT . . . KA 16 10.881 -137.788 22.988 1 84.32 ? C36 LXT 213 K 1 
HETATM 37 C C37 LXT . . . KA 16 12.389 -137.821 23.311 1 85.4 ? C37 LXT 213 K 1 
HETATM 38 N N38 LXT . . . KA 16 10.149 -138.69 23.904 1 84.26 ? N38 LXT 213 K 1 
HETATM 39 C C41 LXT . . . KA 16 12.835 -136.576 24.105 1 86.62 ? C41 LXT 213 K 1 
HETATM 40 C C42 LXT . . . KA 16 14.281 -136.162 23.764 1 87.79 ? C42 LXT 213 K 1 
HETATM 41 C C43 LXT . . . KA 16 15.249 -136.13 24.774 1 87.91 ? C43 LXT 213 K 1 
HETATM 42 C C44 LXT . . . KA 16 16.56 -135.76 24.465 1 88.2 ? C44 LXT 213 K 1 
HETATM 43 C C45 LXT . . . KA 16 16.905 -135.424 23.15 1 88.52 ? C45 LXT 213 K 1 
HETATM 44 C C46 LXT . . . KA 16 15.945 -135.451 22.134 1 88.22 ? C46 LXT 213 K 1 
HETATM 45 C C47 LXT . . . KA 16 14.635 -135.818 22.447 1 88.14 ? C47 LXT 213 K 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    71 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           45 
#