data_3MG7 # _model_server_result.job_id yC7w718Sld0A6lTEY417kw _model_server_result.datetime_utc '2024-12-04 05:00:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mg7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JA","auth_seq_id":213}' # _entry.id 3MG7 # _exptl.entry_id 3MG7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 593.712 _entity.id 16 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(benzyloxy)-N-[(1S,2R)-2-hydroxy-1-({(1S)-1-[(2-methylbenzyl)carbamoyl]-3-phenylpropyl}carbamoyl)propyl]benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.73 _cell.angle_gamma 90 _cell.entry_id 3MG7 _cell.length_a 136.017 _cell.length_b 300.379 _cell.length_c 145.811 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MG7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 28-meric _pdbx_struct_assembly.oligomeric_count 28 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 16 JA N N ? 16 OA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D OE2 GLU 105 D GLU 105 1_555 LA MG MG . L MG 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc2 F OG SER 13 F SER 13 1_555 DA MG MG . F MG 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.891 ? metalc ? metalc3 F O ALA 164 F ALA 164 1_555 CA MG MG . F MG 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc4 DA MG MG . F MG 243 1_555 G O TYR 133 G TYR 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc5 G OG1 THR 17 G THR 13 1_555 EA MG MG . G MG 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc6 G O TYR 128 G TYR 123 1_555 EA MG MG . G MG 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc7 G O ARG 131 G ARG 126 1_555 EA MG MG . G MG 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc8 G O MET 134 G MET 129 1_555 EA MG MG . G MG 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc9 H O ILE 163 H ILE 163 1_555 FA MG MG . H MG 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc10 H O ASP 166 H ASP 166 1_555 FA MG MG . H MG 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc11 H O SER 169 H SER 169 1_555 FA MG MG . H MG 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc12 FA MG MG . H MG 224 1_555 Z OXT ASP 241 Z ASP 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc13 I O GLY 140 I GLY 128 1_555 GA MG MG . I MG 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc14 I OG SER 143 I SER 131 1_555 GA MG MG . I MG 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc15 I O ALA 175 I ALA 163 1_555 HA MG MG . I MG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc16 I O ASP 178 I ASP 166 1_555 HA MG MG . I MG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc17 I O SER 181 I SER 169 1_555 HA MG MG . I MG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc18 K O ALA 165 K ALA 163 1_555 IA MG MG . K MG 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc19 K O ASP 168 K ASP 166 1_555 IA MG MG . K MG 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc20 K O SER 171 K SER 169 1_555 IA MG MG . K MG 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.9 ? metalc ? metalc21 IA MG MG . K MG 212 1_555 W O ASP 205 W ASP 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc22 L OG SER 104 L SER 75 1_555 LA MG MG . L MG 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc23 L OG SER 107 L SER 78 1_555 LA MG MG . L MG 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc24 L O THR 211 L THR 163 1_555 MA MG MG . L MG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc25 L O HIS 214 L HIS 166 1_555 MA MG MG . L MG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc26 L O VAL 217 L VAL 169 1_555 MA MG MG . L MG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc27 N O ILE 163 N ILE 163 1_555 NA MG MG . N MG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc28 N O ASP 166 N ASP 166 1_555 NA MG MG . N MG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc29 N O SER 169 N SER 169 1_555 NA MG MG . N MG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? # _chem_comp.formula 'C36 H39 N3 O5' _chem_comp.formula_weight 593.712 _chem_comp.id L2T _chem_comp.mon_nstd_flag . _chem_comp.name 4-(benzyloxy)-N-[(1S,2R)-2-hydroxy-1-({(1S)-1-[(2-methylbenzyl)carbamoyl]-3-phenylpropyl}carbamoyl)propyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C1 L2T doub 173 n y C1 C8 L2T sing 174 n n C1 C2 L2T sing 175 n y C3 C2 L2T doub 176 n y C2 H2 L2T sing 177 n n C4 C3 L2T sing 178 n y C3 H3 L2T sing 179 n n C5 C4 L2T doub 180 n y C4 H4 L2T sing 181 n n C5 C6 L2T sing 182 n y C5 H5 L2T sing 183 n n CL7 C6 L2T sing 184 n n C8 N30 L2T sing 185 n n C8 H8 L2T sing 186 n n C8 H8A L2T sing 187 n n C28 C9 L2T sing 188 n n C9 C35 L2T doub 189 n y C9 C31 L2T sing 190 n y N30 C10 L2T sing 191 n n O11 C10 L2T doub 192 n n C10 C12 L2T sing 193 n n C13 C12 L2T sing 194 n n C12 N14 L2T sing 195 n n C12 H12 L2T sing 196 n n C13 C15 L2T sing 197 n n C13 H13 L2T sing 198 n n C13 H13A L2T sing 199 n n N14 C16 L2T sing 200 n n N14 HN14 L2T sing 201 n n C15 C22 L2T sing 202 n n C15 H15 L2T sing 203 n n C15 H15A L2T sing 204 n n O17 C16 L2T doub 205 n n C16 C18 L2T sing 206 n n C20 C18 L2T sing 207 n n C18 N19 L2T sing 208 n n C18 H18 L2T sing 209 n n N19 C28 L2T sing 210 n n N19 HN19 L2T sing 211 n n C44 C20 L2T sing 212 n n C20 O21 L2T sing 213 n n C20 H20 L2T sing 214 n n O21 HO21 L2T sing 215 n n C24 C22 L2T doub 216 n y C22 C23 L2T sing 217 n y C23 C25 L2T doub 218 n y C23 H23 L2T sing 219 n n C24 C27 L2T sing 220 n y C24 H24 L2T sing 221 n n C26 C25 L2T sing 222 n y C25 H25 L2T sing 223 n n C27 C26 L2T doub 224 n y C26 H26 L2T sing 225 n n C27 H27 L2T sing 226 n n O29 C28 L2T doub 227 n n N30 HN30 L2T sing 228 n n C31 C32 L2T doub 229 n y C31 H31 L2T sing 230 n n C32 C33 L2T sing 231 n y C32 H32 L2T sing 232 n n C34 C33 L2T doub 233 n y C33 O36 L2T sing 234 n n C35 C34 L2T sing 235 n y C34 H34 L2T sing 236 n n C35 H35 L2T sing 237 n n O36 C37 L2T sing 238 n n C37 C38 L2T sing 239 n n C37 H37 L2T sing 240 n n C37 H37A L2T sing 241 n n C38 C39 L2T doub 242 n y C38 C43 L2T sing 243 n y C39 C40 L2T sing 244 n y C39 H39 L2T sing 245 n n C40 C41 L2T doub 246 n y C40 H40 L2T sing 247 n n C42 C41 L2T sing 248 n y C41 H41 L2T sing 249 n n C43 C42 L2T doub 250 n y C42 H42 L2T sing 251 n n C43 H43 L2T sing 252 n n C44 H44 L2T sing 253 n n C44 H44A L2T sing 254 n n C44 H44B L2T sing 255 n n CL7 HL7 L2T sing 256 n n CL7 HL7A L2T sing 257 n n CL7 HL7B L2T sing 258 n n # _atom_sites.entry_id 3MG7 _atom_sites.fract_transf_matrix[1][1] 0.007352 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003233 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003329 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007492 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CA 15 MG F 1 242 9 MG MG . DA 15 MG F 1 243 10 MG MG . EA 15 MG G 1 241 1 MG MG . FA 15 MG H 1 224 7 MG MG . GA 15 MG I 1 195 3 MG MG . HA 15 MG I 1 196 5 MG MG . IA 15 MG K 1 212 8 MG MG . JA 16 L2T K 1 213 1 L2T L2T . KA 17 MES K 1 214 1 MES MES . LA 15 MG L 1 195 2 MG MG . MA 15 MG L 1 196 4 MG MG . NA 15 MG N 1 188 6 MG MG . OA 16 L2T Y 1 212 1 L2T L2T . PA 17 MES Y 1 213 1 MES MES . QA 18 HOH L 1 197 3 HOH HOH . QA 18 HOH L 2 198 4 HOH HOH . RA 18 HOH Z 1 195 1 HOH HOH . RA 18 HOH Z 2 196 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 L2T . . . JA 16 9.575 -135.099 12.788 1 45.19 ? C1 L2T 213 K 1 HETATM 2 C C2 L2T . . . JA 16 8.258 -135.177 13.232 1 45.14 ? C2 L2T 213 K 1 HETATM 3 C C3 L2T . . . JA 16 7.502 -134.022 13.429 1 45.24 ? C3 L2T 213 K 1 HETATM 4 C C4 L2T . . . JA 16 8.054 -132.774 13.174 1 45.15 ? C4 L2T 213 K 1 HETATM 5 C C5 L2T . . . JA 16 9.368 -132.689 12.727 1 45.1 ? C5 L2T 213 K 1 HETATM 6 C C6 L2T . . . JA 16 10.131 -133.842 12.534 1 45.42 ? C6 L2T 213 K 1 HETATM 7 C C8 L2T . . . JA 16 10.321 -136.42 12.585 1 45.41 ? C8 L2T 213 K 1 HETATM 8 C C9 L2T . . . JA 16 11.671 -137.515 22.326 1 52.13 ? C9 L2T 213 K 1 HETATM 9 C C10 L2T . . . JA 16 10.546 -137.706 14.649 1 45.7 ? C10 L2T 213 K 1 HETATM 10 O O11 L2T . . . JA 16 9.449 -138.243 14.513 1 45.25 ? O11 L2T 213 K 1 HETATM 11 C C12 L2T . . . JA 16 11.454 -137.999 15.86 1 46.27 ? C12 L2T 213 K 1 HETATM 12 C C13 L2T . . . JA 16 12.174 -139.344 15.682 1 46.16 ? C13 L2T 213 K 1 HETATM 13 N N14 L2T . . . JA 16 10.616 -138.01 17.066 1 46.79 ? N14 L2T 213 K 1 HETATM 14 C C15 L2T . . . JA 16 13.026 -139.724 16.891 1 45.7 ? C15 L2T 213 K 1 HETATM 15 C C16 L2T . . . JA 16 10.627 -137.042 17.972 1 47.54 ? C16 L2T 213 K 1 HETATM 16 O O17 L2T . . . JA 16 11.34 -136.045 17.923 1 47.33 ? O17 L2T 213 K 1 HETATM 17 C C18 L2T . . . JA 16 9.633 -137.281 19.112 1 48.57 ? C18 L2T 213 K 1 HETATM 18 N N19 L2T . . . JA 16 10.211 -137.088 20.455 1 49.89 ? N19 L2T 213 K 1 HETATM 19 C C20 L2T . . . JA 16 8.379 -136.413 18.951 1 48.36 ? C20 L2T 213 K 1 HETATM 20 O O21 L2T . . . JA 16 7.53 -136.646 20.07 1 48.39 ? O21 L2T 213 K 1 HETATM 21 C C22 L2T . . . JA 16 14.186 -138.746 17.055 1 45.81 ? C22 L2T 213 K 1 HETATM 22 C C23 L2T . . . JA 16 14.2 -137.867 18.144 1 45.59 ? C23 L2T 213 K 1 HETATM 23 C C24 L2T . . . JA 16 15.223 -138.732 16.12 1 45.78 ? C24 L2T 213 K 1 HETATM 24 C C25 L2T . . . JA 16 15.26 -136.973 18.287 1 45.43 ? C25 L2T 213 K 1 HETATM 25 C C26 L2T . . . JA 16 16.294 -136.958 17.35 1 45.32 ? C26 L2T 213 K 1 HETATM 26 C C27 L2T . . . JA 16 16.283 -137.837 16.27 1 45.45 ? C27 L2T 213 K 1 HETATM 27 C C28 L2T . . . JA 16 11.228 -137.818 20.904 1 51.78 ? C28 L2T 213 K 1 HETATM 28 O O29 L2T . . . JA 16 11.8 -138.685 20.251 1 52.39 ? O29 L2T 213 K 1 HETATM 29 N N30 L2T . . . JA 16 11.037 -136.829 13.791 1 45.79 ? N30 L2T 213 K 1 HETATM 30 C C31 L2T . . . JA 16 11.891 -138.569 23.22 1 52.03 ? C31 L2T 213 K 1 HETATM 31 C C32 L2T . . . JA 16 12.296 -138.286 24.527 1 52.42 ? C32 L2T 213 K 1 HETATM 32 C C33 L2T . . . JA 16 12.474 -136.953 24.926 1 52.7 ? C33 L2T 213 K 1 HETATM 33 C C34 L2T . . . JA 16 12.24 -135.913 24.025 1 52.6 ? C34 L2T 213 K 1 HETATM 34 C C35 L2T . . . JA 16 11.842 -136.192 22.723 1 52.27 ? C35 L2T 213 K 1 HETATM 35 O O36 L2T . . . JA 16 12.858 -136.591 26.183 1 53.19 ? O36 L2T 213 K 1 HETATM 36 C C37 L2T . . . JA 16 13.49 -137.56 27.038 1 54.93 ? C37 L2T 213 K 1 HETATM 37 C C38 L2T . . . JA 16 14.229 -137.046 28.098 1 55.41 ? C38 L2T 213 K 1 HETATM 38 C C39 L2T . . . JA 16 15.56 -137.426 28.278 1 55.53 ? C39 L2T 213 K 1 HETATM 39 C C40 L2T . . . JA 16 16.296 -136.89 29.333 1 55.68 ? C40 L2T 213 K 1 HETATM 40 C C41 L2T . . . JA 16 15.699 -135.973 30.202 1 55.72 ? C41 L2T 213 K 1 HETATM 41 C C42 L2T . . . JA 16 14.368 -135.594 30.021 1 55.81 ? C42 L2T 213 K 1 HETATM 42 C C43 L2T . . . JA 16 13.634 -136.123 28.961 1 55.61 ? C43 L2T 213 K 1 HETATM 43 C C44 L2T . . . JA 16 7.634 -136.749 17.664 1 48.14 ? C44 L2T 213 K 1 HETATM 44 C CL7 L2T . . . JA 16 11.782 -133.698 11.984 0.8 45.84 ? CL7 L2T 213 K 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 92 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #