data_3MG8 # _model_server_result.job_id F_6OqY45VjfDB7KZ0or3Yg _model_server_result.datetime_utc '2024-11-04 22:45:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mg8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JA","auth_seq_id":213}' # _entry.id 3MG8 # _exptl.entry_id 3MG8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 624.729 _entity.id 16 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(2,2-dimethylpropyl)-N~2~-[1H-indol-3-yl(oxo)acetyl]-L-asparaginyl-N-(2-methylbenzyl)-3-pyridin-4-yl-L-alaninamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.13 _cell.angle_gamma 90 _cell.entry_id 3MG8 _cell.length_a 136.333 _cell.length_b 299.185 _cell.length_c 145.667 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MG8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 28-meric _pdbx_struct_assembly.oligomeric_count 28 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 16 JA N N ? 16 OA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D OE2 GLU 105 D GLU 105 1_555 LA MG MG . L MG 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc2 F OG SER 13 F SER 13 1_555 DA MG MG . F MG 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc3 F O ALA 164 F ALA 164 1_555 CA MG MG . F MG 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc4 DA MG MG . F MG 243 1_555 G O ALA 132 G ALA 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? metalc ? metalc5 G OG1 THR 17 G THR 13 1_555 EA MG MG . G MG 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc6 G O TYR 128 G TYR 123 1_555 EA MG MG . G MG 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc7 G O ARG 131 G ARG 126 1_555 EA MG MG . G MG 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc8 G O MET 134 G MET 129 1_555 EA MG MG . G MG 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc9 H O ILE 163 H ILE 163 1_555 FA MG MG . H MG 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc10 H O ASP 166 H ASP 166 1_555 FA MG MG . H MG 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc11 H O SER 169 H SER 169 1_555 FA MG MG . H MG 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc12 FA MG MG . H MG 224 1_555 Z OXT ASP 241 Z ASP 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc13 I O GLY 140 I GLY 128 1_555 GA MG MG . I MG 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc14 I OG SER 143 I SER 131 1_555 GA MG MG . I MG 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc15 I O ALA 175 I ALA 163 1_555 HA MG MG . I MG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc16 I O ASP 178 I ASP 166 1_555 HA MG MG . I MG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc17 I O SER 181 I SER 169 1_555 HA MG MG . I MG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc18 K O ALA 165 K ALA 163 1_555 IA MG MG . K MG 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc19 K O ASP 168 K ASP 166 1_555 IA MG MG . K MG 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc20 K O SER 171 K SER 169 1_555 IA MG MG . K MG 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc21 IA MG MG . K MG 212 1_555 W O ASP 205 W ASP 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc22 L OG SER 104 L SER 75 1_555 LA MG MG . L MG 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc23 L OG SER 107 L SER 78 1_555 LA MG MG . L MG 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc24 L O THR 211 L THR 163 1_555 MA MG MG . L MG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc25 L O HIS 214 L HIS 166 1_555 MA MG MG . L MG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc26 L O VAL 217 L VAL 169 1_555 MA MG MG . L MG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc27 N O ILE 163 N ILE 163 1_555 NA MG MG . N MG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc28 N O ASP 166 N ASP 166 1_555 NA MG MG . N MG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc29 N O SER 169 N SER 169 1_555 NA MG MG . N MG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? # _chem_comp.formula 'C35 H40 N6 O5' _chem_comp.formula_weight 624.729 _chem_comp.id L3T _chem_comp.mon_nstd_flag . _chem_comp.name N-(2,2-dimethylpropyl)-N~2~-[1H-indol-3-yl(oxo)acetyl]-L-asparaginyl-N-(2-methylbenzyl)-3-pyridin-4-yl-L-alaninamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C1 L3T doub 173 n y N2 C1 L3T sing 174 n y C1 C9 L3T sing 175 n y C3 N2 L3T sing 176 n y C4 C3 L3T doub 177 n y C3 H3 L3T sing 178 n n C10 C4 L3T sing 179 n n C4 C5 L3T sing 180 n y C5 C6 L3T sing 181 n y C6 C7 L3T doub 182 n y C6 H6 L3T sing 183 n n C7 C8 L3T sing 184 n y C7 H7 L3T sing 185 n n C9 C8 L3T doub 186 n y C8 H8 L3T sing 187 n n C9 H9 L3T sing 188 n n C11 C10 L3T sing 189 n n C10 O12 L3T doub 190 n n N24 C11 L3T sing 191 n n O13 C11 L3T doub 192 n n C33 N14 L3T doub 193 n y N14 C32 L3T sing 194 n y C16 N15 L3T sing 195 n n N15 C25 L3T sing 196 n n N15 HN15 L3T sing 197 n n C16 C17 L3T sing 198 n n C16 H16 L3T sing 199 n n C16 H16A L3T sing 200 n n C18 C17 L3T doub 201 n y C17 C22 L3T sing 202 n y CL23 C18 L3T sing 203 n n C18 C19 L3T sing 204 n y C19 C20 L3T doub 205 n y C19 H19 L3T sing 206 n n C20 C21 L3T sing 207 n y C20 H20 L3T sing 208 n n C22 C21 L3T doub 209 n y C21 H21 L3T sing 210 n n C22 H22 L3T sing 211 n n CL23 HL23 L3T sing 212 n n CL23 HL2A L3T sing 213 n n CL23 HL2B L3T sing 214 n n C36 N24 L3T sing 215 n n N24 HN24 L3T sing 216 n n O27 C25 L3T doub 217 n n C25 C26 L3T sing 218 n n C28 C26 L3T sing 219 n n C26 N29 L3T sing 220 n n C26 H26 L3T sing 221 n n C28 C30 L3T sing 222 n n C28 H28 L3T sing 223 n n C28 H28A L3T sing 224 n n N29 C35 L3T sing 225 n n N29 HN29 L3T sing 226 n n C34 C30 L3T doub 227 n y C30 C31 L3T sing 228 n y C31 C32 L3T doub 229 n y C31 H31 L3T sing 230 n n C32 H32 L3T sing 231 n n C34 C33 L3T sing 232 n y C33 H33 L3T sing 233 n n C34 H34 L3T sing 234 n n O37 C35 L3T doub 235 n n C35 C36 L3T sing 236 n n C38 C36 L3T sing 237 n n C36 H36 L3T sing 238 n n C38 C39 L3T sing 239 n n C38 H38 L3T sing 240 n n C38 H38A L3T sing 241 n n N40 C39 L3T sing 242 n n C39 O41 L3T doub 243 n n N40 C42 L3T sing 244 n n N40 HN40 L3T sing 245 n n C43 C42 L3T sing 246 n n C42 H42 L3T sing 247 n n C42 H42A L3T sing 248 n n C44 C43 L3T sing 249 n n C46 C43 L3T sing 250 n n C43 C45 L3T sing 251 n n C44 H44 L3T sing 252 n n C44 H44A L3T sing 253 n n C44 H44B L3T sing 254 n n C45 H45 L3T sing 255 n n C45 H45A L3T sing 256 n n C45 H45B L3T sing 257 n n C46 H46 L3T sing 258 n n C46 H46A L3T sing 259 n n C46 H46B L3T sing 260 n n N2 HN2 L3T sing 261 n n # _atom_sites.entry_id 3MG8 _atom_sites.fract_transf_matrix[1][1] 0.007335 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003133 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003342 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007465 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CA 15 MG F 1 242 9 MG MG . DA 15 MG F 1 243 10 MG MG . EA 15 MG G 1 241 1 MG MG . FA 15 MG H 1 224 7 MG MG . GA 15 MG I 1 195 3 MG MG . HA 15 MG I 1 196 5 MG MG . IA 15 MG K 1 212 8 MG MG . JA 16 L3T K 1 213 1 L3T L3T . KA 17 MES K 1 214 1 MES MES . LA 15 MG L 1 195 2 MG MG . MA 15 MG L 1 196 4 MG MG . NA 15 MG N 1 188 6 MG MG . OA 16 L3T Y 1 212 1 L3T L3T . PA 17 MES Y 1 213 1 MES MES . QA 18 HOH K 1 215 4 HOH HOH . QA 18 HOH K 2 216 5 HOH HOH . RA 18 HOH L 1 197 1 HOH HOH . RA 18 HOH L 2 198 2 HOH HOH . RA 18 HOH L 3 199 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 L3T . . . JA 16 12.688 -137.826 25.902 1 51.54 ? C1 L3T 213 K 1 HETATM 2 N N2 L3T . . . JA 16 12.128 -138.863 25.257 1 51.07 ? N2 L3T 213 K 1 HETATM 3 C C3 L3T . . . JA 16 11.616 -138.44 24.096 1 49.6 ? C3 L3T 213 K 1 HETATM 4 C C4 L3T . . . JA 16 11.879 -137.133 23.967 1 48.48 ? C4 L3T 213 K 1 HETATM 5 C C5 L3T . . . JA 16 12.527 -136.685 25.109 1 50.34 ? C5 L3T 213 K 1 HETATM 6 C C6 L3T . . . JA 16 13.018 -135.444 25.519 1 50.15 ? C6 L3T 213 K 1 HETATM 7 C C7 L3T . . . JA 16 13.675 -135.345 26.742 1 50.94 ? C7 L3T 213 K 1 HETATM 8 C C8 L3T . . . JA 16 13.84 -136.479 27.543 1 52.02 ? C8 L3T 213 K 1 HETATM 9 C C9 L3T . . . JA 16 13.351 -137.723 27.129 1 52.24 ? C9 L3T 213 K 1 HETATM 10 C C10 L3T . . . JA 16 11.403 -136.244 22.816 1 44.54 ? C10 L3T 213 K 1 HETATM 11 C C11 L3T . . . JA 16 10.961 -136.806 21.463 1 41.08 ? C11 L3T 213 K 1 HETATM 12 O O12 L3T . . . JA 16 11.201 -135.055 23.035 1 45.59 ? O12 L3T 213 K 1 HETATM 13 O O13 L3T . . . JA 16 11.142 -137.994 21.219 1 40.19 ? O13 L3T 213 K 1 HETATM 14 N N14 L3T . . . JA 16 15.842 -138.175 18.4 1 38.67 ? N14 L3T 213 K 1 HETATM 15 N N15 L3T . . . JA 16 11.001 -135.974 14.017 1 34.18 ? N15 L3T 213 K 1 HETATM 16 C C16 L3T . . . JA 16 10.123 -135.667 12.905 1 35.21 ? C16 L3T 213 K 1 HETATM 17 C C17 L3T . . . JA 16 9.481 -134.308 13.13 1 36.48 ? C17 L3T 213 K 1 HETATM 18 C C18 L3T . . . JA 16 10.144 -133.079 13.012 1 38.65 ? C18 L3T 213 K 1 HETATM 19 C C19 L3T . . . JA 16 9.444 -131.885 13.232 1 38.48 ? C19 L3T 213 K 1 HETATM 20 C C20 L3T . . . JA 16 8.095 -131.91 13.573 1 37.24 ? C20 L3T 213 K 1 HETATM 21 C C21 L3T . . . JA 16 7.449 -133.131 13.704 1 36.02 ? C21 L3T 213 K 1 HETATM 22 C C22 L3T . . . JA 16 8.138 -134.319 13.482 1 35.73 ? C22 L3T 213 K 1 HETATM 23 C CL23 L3T . . . JA 16 11.841 -133 12.614 1 42.28 ? CL23 L3T 213 K 1 HETATM 24 N N24 L3T . . . JA 16 10.447 -135.967 20.571 1 38.15 ? N24 L3T 213 K 1 HETATM 25 C C25 L3T . . . JA 16 10.68 -136.91 14.889 1 34.49 ? C25 L3T 213 K 1 HETATM 26 C C26 L3T . . . JA 16 11.692 -137.098 16.01 1 34.39 ? C26 L3T 213 K 1 HETATM 27 O O27 L3T . . . JA 16 9.633 -137.555 14.861 1 34.07 ? O27 L3T 213 K 1 HETATM 28 C C28 L3T . . . JA 16 12.48 -138.382 15.834 1 35.05 ? C28 L3T 213 K 1 HETATM 29 N N29 L3T . . . JA 16 10.916 -137.139 17.235 1 33.84 ? N29 L3T 213 K 1 HETATM 30 C C30 L3T . . . JA 16 13.682 -138.312 16.75 1 36.35 ? C30 L3T 213 K 1 HETATM 31 C C31 L3T . . . JA 16 13.646 -138.939 17.997 1 36.26 ? C31 L3T 213 K 1 HETATM 32 C C32 L3T . . . JA 16 14.768 -138.845 18.816 1 37.14 ? C32 L3T 213 K 1 HETATM 33 C C33 L3T . . . JA 16 15.91 -137.563 17.218 1 37.58 ? C33 L3T 213 K 1 HETATM 34 C C34 L3T . . . JA 16 14.819 -137.612 16.347 1 36.94 ? C34 L3T 213 K 1 HETATM 35 C C35 L3T . . . JA 16 10.998 -136.21 18.166 1 34.04 ? C35 L3T 213 K 1 HETATM 36 C C36 L3T . . . JA 16 9.983 -136.425 19.258 1 35.25 ? C36 L3T 213 K 1 HETATM 37 O O37 L3T . . . JA 16 11.736 -135.224 18.129 1 33.34 ? O37 L3T 213 K 1 HETATM 38 C C38 L3T . . . JA 16 8.735 -135.634 18.829 1 35.1 ? C38 L3T 213 K 1 HETATM 39 C C39 L3T . . . JA 16 7.44 -135.887 19.617 1 35.94 ? C39 L3T 213 K 1 HETATM 40 N N40 L3T . . . JA 16 6.58 -134.869 19.561 1 35.29 ? N40 L3T 213 K 1 HETATM 41 O O41 L3T . . . JA 16 7.222 -136.946 20.21 1 36.41 ? O41 L3T 213 K 1 HETATM 42 C C42 L3T . . . JA 16 5.267 -134.894 20.233 1 35.4 ? C42 L3T 213 K 1 HETATM 43 C C43 L3T . . . JA 16 4.131 -134.489 19.27 1 35.53 ? C43 L3T 213 K 1 HETATM 44 C C44 L3T . . . JA 16 4.109 -135.406 18.05 1 34.99 ? C44 L3T 213 K 1 HETATM 45 C C45 L3T . . . JA 16 2.791 -134.626 19.983 1 35.63 ? C45 L3T 213 K 1 HETATM 46 C C46 L3T . . . JA 16 4.301 -133.053 18.782 1 35.11 ? C46 L3T 213 K 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 69 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 46 #