data_3MGC # _model_server_result.job_id EpVjYyuU0bcGHFGnrqalkg _model_server_result.datetime_utc '2024-11-17 08:43:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mgc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":288}' # _entry.id 3MGC # _exptl.entry_id 3MGC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MGC _cell.length_a 79.388 _cell.length_b 126.086 _cell.length_c 145.133 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MGC _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -79.388 0 72.5665 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3MGC _atom_sites.fract_transf_matrix[1][1] 0.012596 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007931 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00689 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 286 1 GOL GOL . D 2 GOL A 1 287 2 GOL GOL . E 2 GOL A 1 288 3 GOL GOL . F 3 IMD A 1 289 1 IMD IMD . G 4 PME A 1 290 1 PME PME . H 5 HOH A 1 291 1 HOH HOH . H 5 HOH A 2 292 3 HOH HOH . H 5 HOH A 3 293 4 HOH HOH . H 5 HOH A 4 294 5 HOH HOH . H 5 HOH A 5 295 6 HOH HOH . H 5 HOH A 6 296 7 HOH HOH . H 5 HOH A 7 297 9 HOH HOH . H 5 HOH A 8 298 10 HOH HOH . H 5 HOH A 9 299 11 HOH HOH . H 5 HOH A 10 300 12 HOH HOH . H 5 HOH A 11 301 14 HOH HOH . H 5 HOH A 12 302 15 HOH HOH . H 5 HOH A 13 303 17 HOH HOH . H 5 HOH A 14 304 21 HOH HOH . H 5 HOH A 15 305 23 HOH HOH . H 5 HOH A 16 306 25 HOH HOH . H 5 HOH A 17 307 26 HOH HOH . H 5 HOH A 18 308 27 HOH HOH . H 5 HOH A 19 309 28 HOH HOH . H 5 HOH A 20 310 30 HOH HOH . H 5 HOH A 21 311 31 HOH HOH . H 5 HOH A 22 312 34 HOH HOH . I 5 HOH B 1 286 2 HOH HOH . I 5 HOH B 2 287 8 HOH HOH . I 5 HOH B 3 288 13 HOH HOH . I 5 HOH B 4 289 16 HOH HOH . I 5 HOH B 5 290 18 HOH HOH . I 5 HOH B 6 291 19 HOH HOH . I 5 HOH B 7 292 20 HOH HOH . I 5 HOH B 8 293 22 HOH HOH . I 5 HOH B 9 294 24 HOH HOH . I 5 HOH B 10 295 29 HOH HOH . I 5 HOH B 11 296 32 HOH HOH . I 5 HOH B 12 297 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 2 -17.682 17.874 45.101 1 68.7 ? C1 GOL 288 A 1 HETATM 2 O O1 GOL . . . E 2 -17.059 16.613 45.255 1 70.82 ? O1 GOL 288 A 1 HETATM 3 C C2 GOL . . . E 2 -16.634 18.983 45.103 1 69.08 ? C2 GOL 288 A 1 HETATM 4 O O2 GOL . . . E 2 -15.384 18.471 44.67 1 67.96 ? O2 GOL 288 A 1 HETATM 5 C C3 GOL . . . E 2 -16.532 19.562 46.522 1 72.21 ? C3 GOL 288 A 1 HETATM 6 O O3 GOL . . . E 2 -15.628 20.66 46.565 1 73.78 ? O3 GOL 288 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #