data_3MGC # _model_server_result.job_id CGYGmTLSzMRqprSqNncm_Q _model_server_result.datetime_utc '2024-11-17 08:27:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mgc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":290}' # _entry.id 3MGC # _exptl.entry_id 3MGC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 294.303 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-L-ALPHA-ASPARTYL L-PHENYLALANINE 1-METHYL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MGC _cell.length_a 79.388 _cell.length_b 126.086 _cell.length_c 145.133 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MGC _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -79.388 0 72.5665 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H18 N2 O5' _chem_comp.formula_weight 294.303 _chem_comp.id PME _chem_comp.mon_nstd_flag . _chem_comp.name 'N-L-ALPHA-ASPARTYL L-PHENYLALANINE 1-METHYL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ASPARTAME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PME sing 283 n n N1 HN11 PME sing 284 n n N1 HN12 PME sing 285 n n C2 C3 PME sing 286 n n C2 C7 PME sing 287 n n C2 H2 PME sing 288 n n C3 C4 PME sing 289 n n C3 H31 PME sing 290 n n C3 H32 PME sing 291 n n C4 O5 PME doub 292 n n C4 O6 PME sing 293 n n O6 HO6 PME sing 294 n n C7 O8 PME doub 295 n n C7 N9 PME sing 296 n n N9 C10 PME sing 297 n n N9 HN9 PME sing 298 n n C10 C11 PME sing 299 n n C10 C18 PME sing 300 n n C10 H10 PME sing 301 n n C11 C12 PME sing 302 n n C11 H111 PME sing 303 n n C11 H112 PME sing 304 n n C12 C13 PME doub 305 n y C12 C17 PME sing 306 n y C13 C14 PME sing 307 n y C13 H13 PME sing 308 n n C14 C15 PME doub 309 n y C14 H14 PME sing 310 n n C15 C16 PME sing 311 n y C15 H15 PME sing 312 n n C16 C17 PME doub 313 n y C16 H16 PME sing 314 n n C17 H17 PME sing 315 n n C18 O19 PME doub 316 n n C18 O20 PME sing 317 n n O20 C21 PME sing 318 n n C21 H211 PME sing 319 n n C21 H212 PME sing 320 n n C21 H213 PME sing 321 n n # _atom_sites.entry_id 3MGC _atom_sites.fract_transf_matrix[1][1] 0.012596 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007931 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00689 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 286 1 GOL GOL . D 2 GOL A 1 287 2 GOL GOL . E 2 GOL A 1 288 3 GOL GOL . F 3 IMD A 1 289 1 IMD IMD . G 4 PME A 1 290 1 PME PME . H 5 HOH A 1 291 1 HOH HOH . H 5 HOH A 2 292 3 HOH HOH . H 5 HOH A 3 293 4 HOH HOH . H 5 HOH A 4 294 5 HOH HOH . H 5 HOH A 5 295 6 HOH HOH . H 5 HOH A 6 296 7 HOH HOH . H 5 HOH A 7 297 9 HOH HOH . H 5 HOH A 8 298 10 HOH HOH . H 5 HOH A 9 299 11 HOH HOH . H 5 HOH A 10 300 12 HOH HOH . H 5 HOH A 11 301 14 HOH HOH . H 5 HOH A 12 302 15 HOH HOH . H 5 HOH A 13 303 17 HOH HOH . H 5 HOH A 14 304 21 HOH HOH . H 5 HOH A 15 305 23 HOH HOH . H 5 HOH A 16 306 25 HOH HOH . H 5 HOH A 17 307 26 HOH HOH . H 5 HOH A 18 308 27 HOH HOH . H 5 HOH A 19 309 28 HOH HOH . H 5 HOH A 20 310 30 HOH HOH . H 5 HOH A 21 311 31 HOH HOH . H 5 HOH A 22 312 34 HOH HOH . I 5 HOH B 1 286 2 HOH HOH . I 5 HOH B 2 287 8 HOH HOH . I 5 HOH B 3 288 13 HOH HOH . I 5 HOH B 4 289 16 HOH HOH . I 5 HOH B 5 290 18 HOH HOH . I 5 HOH B 6 291 19 HOH HOH . I 5 HOH B 7 292 20 HOH HOH . I 5 HOH B 8 293 22 HOH HOH . I 5 HOH B 9 294 24 HOH HOH . I 5 HOH B 10 295 29 HOH HOH . I 5 HOH B 11 296 32 HOH HOH . I 5 HOH B 12 297 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PME . . . G 4 -17.747 16.303 19.092 1 56.88 ? N1 PME 290 A 1 HETATM 2 C C2 PME . . . G 4 -19.1 16.187 19.548 1 59.44 ? C2 PME 290 A 1 HETATM 3 C C3 PME . . . G 4 -19.304 14.853 20.272 1 62.51 ? C3 PME 290 A 1 HETATM 4 C C4 PME . . . G 4 -18.753 13.683 19.506 1 67.64 ? C4 PME 290 A 1 HETATM 5 O O5 PME . . . G 4 -18.093 13.893 18.447 1 69.26 ? O5 PME 290 A 1 HETATM 6 O O6 PME . . . G 4 -18.983 12.548 19.999 1 70.85 ? O6 PME 290 A 1 HETATM 7 C C7 PME . . . G 4 -19.318 17.381 20.436 1 57.43 ? C7 PME 290 A 1 HETATM 8 O O8 PME . . . G 4 -18.747 18.397 20.107 1 55.11 ? O8 PME 290 A 1 HETATM 9 N N9 PME . . . G 4 -20.218 17.267 21.426 1 57.87 ? N9 PME 290 A 1 HETATM 10 C C10 PME . . . G 4 -21.014 18.353 21.986 1 57.6 ? C10 PME 290 A 1 HETATM 11 C C11 PME . . . G 4 -21.865 17.821 23.143 1 59.76 ? C11 PME 290 A 1 HETATM 12 C C12 PME . . . G 4 -22.594 16.497 22.866 1 64.13 ? C12 PME 290 A 1 HETATM 13 C C13 PME . . . G 4 -21.961 15.275 23.133 1 65.29 ? C13 PME 290 A 1 HETATM 14 C C14 PME . . . G 4 -22.595 14.048 22.907 1 68.5 ? C14 PME 290 A 1 HETATM 15 C C15 PME . . . G 4 -23.901 14.036 22.417 1 70.57 ? C15 PME 290 A 1 HETATM 16 C C16 PME . . . G 4 -24.559 15.257 22.151 1 69.86 ? C16 PME 290 A 1 HETATM 17 C C17 PME . . . G 4 -23.91 16.484 22.381 1 66.66 ? C17 PME 290 A 1 HETATM 18 C C18 PME . . . G 4 -20.247 19.53 22.519 1 56 ? C18 PME 290 A 1 HETATM 19 O O19 PME . . . G 4 -19.345 20.044 21.853 1 51.58 ? O19 PME 290 A 1 HETATM 20 O O20 PME . . . G 4 -20.583 20.098 23.844 1 53.2 ? O20 PME 290 A 1 HETATM 21 C C21 PME . . . G 4 -20.007 21.391 24.157 1 50.48 ? C21 PME 290 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 415 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #