data_3MGE # _model_server_result.job_id '_Y254ixeEoJq0SKjBHpD3g' _model_server_result.datetime_utc '2024-12-21 12:03:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mge # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":232}' # _entry.id 3MGE # _exptl.entry_id 3MGE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3MGE _cell.length_a 90.313 _cell.length_b 90.313 _cell.length_c 56.527 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MGE _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 y,-x+y,z 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 0 6 'crystal symmetry operation' 6_555 x-y,x,z 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 42 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 42 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 54 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 54 _struct_conn.ptnr2_symmetry 5_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.048 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3MGE _atom_sites.fract_transf_matrix[1][1] 0.011073 _atom_sites.fract_transf_matrix[1][2] 0.006393 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012786 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017691 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 232 1 EDO EDO . C 3 HOH A 1 233 1 HOH HOH . C 3 HOH A 2 234 2 HOH HOH . C 3 HOH A 3 235 3 HOH HOH . C 3 HOH A 4 236 4 HOH HOH . C 3 HOH A 5 237 5 HOH HOH . C 3 HOH A 6 238 6 HOH HOH . C 3 HOH A 7 239 7 HOH HOH . C 3 HOH A 8 240 8 HOH HOH . C 3 HOH A 9 241 9 HOH HOH . C 3 HOH A 10 242 10 HOH HOH . C 3 HOH A 11 243 11 HOH HOH . C 3 HOH A 12 244 12 HOH HOH . C 3 HOH A 13 245 13 HOH HOH . C 3 HOH A 14 246 14 HOH HOH . C 3 HOH A 15 247 15 HOH HOH . C 3 HOH A 16 248 16 HOH HOH . C 3 HOH A 17 249 17 HOH HOH . C 3 HOH A 18 250 18 HOH HOH . C 3 HOH A 19 251 19 HOH HOH . C 3 HOH A 20 252 20 HOH HOH . C 3 HOH A 21 253 21 HOH HOH . C 3 HOH A 22 254 22 HOH HOH . C 3 HOH A 23 255 23 HOH HOH . C 3 HOH A 24 256 24 HOH HOH . C 3 HOH A 25 257 25 HOH HOH . C 3 HOH A 26 258 26 HOH HOH . C 3 HOH A 27 259 27 HOH HOH . C 3 HOH A 28 260 28 HOH HOH . C 3 HOH A 29 261 29 HOH HOH . C 3 HOH A 30 262 30 HOH HOH . C 3 HOH A 31 263 31 HOH HOH . C 3 HOH A 32 264 32 HOH HOH . C 3 HOH A 33 265 33 HOH HOH . C 3 HOH A 34 266 34 HOH HOH . C 3 HOH A 35 267 35 HOH HOH . C 3 HOH A 36 268 36 HOH HOH . C 3 HOH A 37 269 37 HOH HOH . C 3 HOH A 38 270 38 HOH HOH . C 3 HOH A 39 271 39 HOH HOH . C 3 HOH A 40 272 40 HOH HOH . C 3 HOH A 41 273 41 HOH HOH . C 3 HOH A 42 274 42 HOH HOH . C 3 HOH A 43 275 43 HOH HOH . C 3 HOH A 44 276 45 HOH HOH . C 3 HOH A 45 277 46 HOH HOH . C 3 HOH A 46 278 47 HOH HOH . C 3 HOH A 47 279 48 HOH HOH . C 3 HOH A 48 280 49 HOH HOH . C 3 HOH A 49 281 50 HOH HOH . C 3 HOH A 50 282 51 HOH HOH . C 3 HOH A 51 283 52 HOH HOH . C 3 HOH A 52 284 53 HOH HOH . C 3 HOH A 53 285 54 HOH HOH . C 3 HOH A 54 286 55 HOH HOH . C 3 HOH A 55 287 56 HOH HOH . C 3 HOH A 56 288 57 HOH HOH . C 3 HOH A 57 289 58 HOH HOH . C 3 HOH A 58 290 59 HOH HOH . C 3 HOH A 59 291 62 HOH HOH . C 3 HOH A 60 292 63 HOH HOH . C 3 HOH A 61 293 64 HOH HOH . C 3 HOH A 62 294 65 HOH HOH . C 3 HOH A 63 295 66 HOH HOH . C 3 HOH A 64 296 68 HOH HOH . C 3 HOH A 65 297 69 HOH HOH . C 3 HOH A 66 298 70 HOH HOH . C 3 HOH A 67 299 71 HOH HOH . C 3 HOH A 68 300 72 HOH HOH . C 3 HOH A 69 301 73 HOH HOH . C 3 HOH A 70 302 74 HOH HOH . C 3 HOH A 71 303 76 HOH HOH . C 3 HOH A 72 304 77 HOH HOH . C 3 HOH A 73 305 78 HOH HOH . C 3 HOH A 74 306 79 HOH HOH . C 3 HOH A 75 307 80 HOH HOH . C 3 HOH A 76 308 81 HOH HOH . C 3 HOH A 77 309 82 HOH HOH . C 3 HOH A 78 310 83 HOH HOH . C 3 HOH A 79 311 84 HOH HOH . C 3 HOH A 80 312 85 HOH HOH . C 3 HOH A 81 313 86 HOH HOH . C 3 HOH A 82 314 87 HOH HOH . C 3 HOH A 83 315 88 HOH HOH . C 3 HOH A 84 316 89 HOH HOH . C 3 HOH A 85 317 90 HOH HOH . C 3 HOH A 86 318 91 HOH HOH . C 3 HOH A 87 319 92 HOH HOH . C 3 HOH A 88 320 94 HOH HOH . C 3 HOH A 89 321 95 HOH HOH . C 3 HOH A 90 322 97 HOH HOH . C 3 HOH A 91 323 98 HOH HOH . C 3 HOH A 92 324 100 HOH HOH . C 3 HOH A 93 325 101 HOH HOH . C 3 HOH A 94 326 102 HOH HOH . C 3 HOH A 95 327 103 HOH HOH . C 3 HOH A 96 328 104 HOH HOH . C 3 HOH A 97 329 105 HOH HOH . C 3 HOH A 98 330 106 HOH HOH . C 3 HOH A 99 331 107 HOH HOH . C 3 HOH A 100 332 108 HOH HOH . C 3 HOH A 101 333 111 HOH HOH . C 3 HOH A 102 334 112 HOH HOH . C 3 HOH A 103 335 113 HOH HOH . C 3 HOH A 104 336 114 HOH HOH . C 3 HOH A 105 337 116 HOH HOH . C 3 HOH A 106 338 117 HOH HOH . C 3 HOH A 107 339 118 HOH HOH . C 3 HOH A 108 340 119 HOH HOH . C 3 HOH A 109 341 120 HOH HOH . C 3 HOH A 110 342 121 HOH HOH . C 3 HOH A 111 343 123 HOH HOH . C 3 HOH A 112 344 124 HOH HOH . C 3 HOH A 113 345 125 HOH HOH . C 3 HOH A 114 346 126 HOH HOH . C 3 HOH A 115 347 127 HOH HOH . C 3 HOH A 116 348 128 HOH HOH . C 3 HOH A 117 349 130 HOH HOH . C 3 HOH A 118 350 131 HOH HOH . C 3 HOH A 119 351 132 HOH HOH . C 3 HOH A 120 352 136 HOH HOH . C 3 HOH A 121 353 137 HOH HOH . C 3 HOH A 122 354 138 HOH HOH . C 3 HOH A 123 355 139 HOH HOH . C 3 HOH A 124 356 140 HOH HOH . C 3 HOH A 125 357 141 HOH HOH . C 3 HOH A 126 358 143 HOH HOH . C 3 HOH A 127 359 144 HOH HOH . C 3 HOH A 128 360 145 HOH HOH . C 3 HOH A 129 361 146 HOH HOH . C 3 HOH A 130 362 147 HOH HOH . C 3 HOH A 131 363 148 HOH HOH . C 3 HOH A 132 364 150 HOH HOH . C 3 HOH A 133 365 151 HOH HOH . C 3 HOH A 134 366 152 HOH HOH . C 3 HOH A 135 367 159 HOH HOH . C 3 HOH A 136 368 160 HOH HOH . C 3 HOH A 137 369 162 HOH HOH . C 3 HOH A 138 370 163 HOH HOH . C 3 HOH A 139 371 164 HOH HOH . C 3 HOH A 140 372 165 HOH HOH . C 3 HOH A 141 373 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 30.392 23.121 3.285 1 43.2 ? C1 EDO 232 A 1 HETATM 2 O O1 EDO . . . B 2 30.31 22.509 1.994 1 38.14 ? O1 EDO 232 A 1 HETATM 3 C C2 EDO . . . B 2 29.131 22.794 4.076 1 28.88 ? C2 EDO 232 A 1 HETATM 4 O O2 EDO . . . B 2 29.023 23.72 5.178 1 38.88 ? O2 EDO 232 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 4 #