data_3MGI # _model_server_result.job_id dJvyuplfNtQs1UZMbwETgA _model_server_result.datetime_utc '2024-11-27 14:37:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mgi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":577}' # _entry.id 3MGI # _exptl.entry_id 3MGI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MGI _cell.length_a 56.177 _cell.length_b 63.235 _cell.length_c 140.382 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MGI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 H O HOH . A HOH 4 1_555 G NA NA . A NA 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? metalc ? metalc2 H O HOH . A HOH 87 1_555 F MG MG . A MG 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc3 A O SER 98 A SER 339 1_555 G NA NA . A NA 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc4 A O ILE 100 A ILE 341 1_555 G NA NA . A NA 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.114 ? metalc ? metalc5 A O ALA 103 A ALA 344 1_555 G NA NA . A NA 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.004 ? metalc ? metalc6 A OD2 ASP 186 A ASP 427 1_555 F MG MG . A MG 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc7 A O ASP 186 A ASP 427 1_555 F MG MG . A MG 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? metalc ? metalc8 A OD2 ASP 188 A ASP 429 1_555 F MG MG . A MG 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc9 E O3G D3T . A D3T 576 1_555 F MG MG . A MG 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc10 E O1B D3T . A D3T 576 1_555 F MG MG . A MG 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc11 E O1A D3T . A D3T 576 1_555 F MG MG . A MG 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc12 G NA NA . A NA 578 1_555 C OP1 DA 5 P DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? metalc ? metalc13 G NA NA . A NA 578 1_555 J O HOH . P HOH 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.103 ? hydrog WATSON-CRICK hydrog1 B N3 DC 1 T DC 1 1_555 D N1 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 1 T DC 1 1_555 D O6 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 1 T DC 1 1_555 D N2 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DG 2 T DG 2 1_555 D N3 DC 3 D DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N2 DG 2 T DG 2 1_555 D O2 DC 3 D DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O6 DG 2 T DG 2 1_555 D N4 DC 3 D DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N1 DG 3 T DG 3 1_555 D N3 DC 2 D DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N2 DG 3 T DG 3 1_555 D O2 DC 2 D DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O6 DG 3 T DG 3 1_555 D N4 DC 2 D DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 DC 4 T DC 4 1_555 D N1 DG 1 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N4 DC 4 T DC 4 1_555 D O6 DG 1 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B O2 DC 4 T DC 4 1_555 D N2 DG 1 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N1 DA 6 T DA 6 1_555 C N3 DT 6 P DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N6 DA 6 T DA 6 1_555 C O4 DT 6 P DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N3 DT 7 T DT 7 1_555 C N1 DA 5 P DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O4 DT 7 T DT 7 1_555 C N6 DA 5 P DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N1 DA 8 T DA 8 1_555 C N3 DT 4 P DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N6 DA 8 T DA 8 1_555 C O4 DT 4 P DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N3 DC 9 T DC 9 1_555 C N1 DG 3 P DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N4 DC 9 T DC 9 1_555 C O6 DG 3 P DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B O2 DC 9 T DC 9 1_555 C N2 DG 3 P DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N3 DT 10 T DT 10 1_555 C N1 DA 2 P DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B O4 DT 10 T DT 10 1_555 C N6 DA 2 P DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N1 DG 11 T DG 11 1_555 C N3 DC 1 P DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N2 DG 11 T DG 11 1_555 C O2 DC 1 P DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B O6 DG 11 T DG 11 1_555 C N4 DC 1 P DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3MGI _atom_sites.fract_transf_matrix[1][1] 0.017801 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015814 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007123 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 D3T A 1 576 438 D3T D3T . F 6 MG A 1 577 400 MG MG . G 7 NA A 1 578 401 NA NA . H 8 HOH A 1 1 1 HOH HOH . H 8 HOH A 2 3 3 HOH HOH . H 8 HOH A 3 4 4 HOH HOH . H 8 HOH A 4 5 5 HOH HOH . H 8 HOH A 5 6 6 HOH HOH . H 8 HOH A 6 7 7 HOH HOH . H 8 HOH A 7 9 9 HOH HOH . H 8 HOH A 8 12 12 HOH HOH . H 8 HOH A 9 13 13 HOH HOH . H 8 HOH A 10 14 14 HOH HOH . H 8 HOH A 11 18 18 HOH HOH . H 8 HOH A 12 19 19 HOH HOH . H 8 HOH A 13 21 21 HOH HOH . H 8 HOH A 14 22 22 HOH HOH . H 8 HOH A 15 24 24 HOH HOH . H 8 HOH A 16 25 25 HOH HOH . H 8 HOH A 17 26 26 HOH HOH . H 8 HOH A 18 27 27 HOH HOH . H 8 HOH A 19 28 28 HOH HOH . H 8 HOH A 20 29 29 HOH HOH . H 8 HOH A 21 30 30 HOH HOH . H 8 HOH A 22 31 31 HOH HOH . H 8 HOH A 23 32 32 HOH HOH . H 8 HOH A 24 33 33 HOH HOH . H 8 HOH A 25 34 34 HOH HOH . H 8 HOH A 26 35 35 HOH HOH . H 8 HOH A 27 38 38 HOH HOH . H 8 HOH A 28 39 39 HOH HOH . H 8 HOH A 29 40 40 HOH HOH . H 8 HOH A 30 41 41 HOH HOH . H 8 HOH A 31 42 42 HOH HOH . H 8 HOH A 32 44 44 HOH HOH . H 8 HOH A 33 46 46 HOH HOH . H 8 HOH A 34 47 47 HOH HOH . H 8 HOH A 35 48 48 HOH HOH . H 8 HOH A 36 51 51 HOH HOH . H 8 HOH A 37 52 52 HOH HOH . H 8 HOH A 38 53 53 HOH HOH . H 8 HOH A 39 54 54 HOH HOH . H 8 HOH A 40 55 55 HOH HOH . H 8 HOH A 41 56 56 HOH HOH . H 8 HOH A 42 57 57 HOH HOH . H 8 HOH A 43 58 58 HOH HOH . H 8 HOH A 44 59 59 HOH HOH . H 8 HOH A 45 61 61 HOH HOH . H 8 HOH A 46 63 63 HOH HOH . H 8 HOH A 47 64 64 HOH HOH . H 8 HOH A 48 65 65 HOH HOH . H 8 HOH A 49 66 66 HOH HOH . H 8 HOH A 50 67 67 HOH HOH . H 8 HOH A 51 68 68 HOH HOH . H 8 HOH A 52 70 70 HOH HOH . H 8 HOH A 53 73 73 HOH HOH . H 8 HOH A 54 76 76 HOH HOH . H 8 HOH A 55 77 77 HOH HOH . H 8 HOH A 56 81 81 HOH HOH . H 8 HOH A 57 83 83 HOH HOH . H 8 HOH A 58 84 84 HOH HOH . H 8 HOH A 59 87 87 HOH HOH . H 8 HOH A 60 88 88 HOH HOH . H 8 HOH A 61 89 89 HOH HOH . H 8 HOH A 62 90 90 HOH HOH . H 8 HOH A 63 91 91 HOH HOH . H 8 HOH A 64 92 92 HOH HOH . H 8 HOH A 65 93 93 HOH HOH . H 8 HOH A 66 94 94 HOH HOH . H 8 HOH A 67 96 96 HOH HOH . H 8 HOH A 68 97 97 HOH HOH . H 8 HOH A 69 98 98 HOH HOH . H 8 HOH A 70 99 99 HOH HOH . H 8 HOH A 71 100 100 HOH HOH . H 8 HOH A 72 102 102 HOH HOH . H 8 HOH A 73 103 103 HOH HOH . H 8 HOH A 74 105 105 HOH HOH . H 8 HOH A 75 109 109 HOH HOH . H 8 HOH A 76 110 110 HOH HOH . H 8 HOH A 77 111 111 HOH HOH . H 8 HOH A 78 112 112 HOH HOH . H 8 HOH A 79 113 113 HOH HOH . H 8 HOH A 80 114 114 HOH HOH . H 8 HOH A 81 115 115 HOH HOH . H 8 HOH A 82 121 121 HOH HOH . H 8 HOH A 83 123 123 HOH HOH . H 8 HOH A 84 125 125 HOH HOH . H 8 HOH A 85 129 129 HOH HOH . H 8 HOH A 86 133 133 HOH HOH . H 8 HOH A 87 137 137 HOH HOH . H 8 HOH A 88 139 139 HOH HOH . H 8 HOH A 89 140 140 HOH HOH . H 8 HOH A 90 142 142 HOH HOH . H 8 HOH A 91 143 143 HOH HOH . H 8 HOH A 92 144 144 HOH HOH . H 8 HOH A 93 145 145 HOH HOH . H 8 HOH A 94 146 146 HOH HOH . H 8 HOH A 95 148 148 HOH HOH . H 8 HOH A 96 151 151 HOH HOH . H 8 HOH A 97 152 152 HOH HOH . H 8 HOH A 98 153 153 HOH HOH . H 8 HOH A 99 157 157 HOH HOH . H 8 HOH A 100 158 158 HOH HOH . H 8 HOH A 101 160 160 HOH HOH . H 8 HOH A 102 161 161 HOH HOH . H 8 HOH A 103 167 167 HOH HOH . H 8 HOH A 104 168 168 HOH HOH . H 8 HOH A 105 169 169 HOH HOH . H 8 HOH A 106 171 171 HOH HOH . H 8 HOH A 107 172 172 HOH HOH . H 8 HOH A 108 579 142 HOH HOH . H 8 HOH A 109 580 143 HOH HOH . I 8 HOH T 1 12 8 HOH HOH . I 8 HOH T 2 16 16 HOH HOH . I 8 HOH T 3 43 43 HOH HOH . I 8 HOH T 4 45 45 HOH HOH . I 8 HOH T 5 49 49 HOH HOH . I 8 HOH T 6 62 62 HOH HOH . I 8 HOH T 7 71 71 HOH HOH . I 8 HOH T 8 75 75 HOH HOH . I 8 HOH T 9 78 78 HOH HOH . I 8 HOH T 10 79 79 HOH HOH . I 8 HOH T 11 80 80 HOH HOH . I 8 HOH T 12 82 82 HOH HOH . I 8 HOH T 13 85 85 HOH HOH . I 8 HOH T 14 86 86 HOH HOH . I 8 HOH T 15 104 104 HOH HOH . I 8 HOH T 16 119 119 HOH HOH . I 8 HOH T 17 124 124 HOH HOH . I 8 HOH T 18 127 127 HOH HOH . I 8 HOH T 19 138 138 HOH HOH . I 8 HOH T 20 154 154 HOH HOH . I 8 HOH T 21 163 163 HOH HOH . I 8 HOH T 22 165 165 HOH HOH . I 8 HOH T 23 170 170 HOH HOH . J 8 HOH P 1 7 2 HOH HOH . J 8 HOH P 2 10 10 HOH HOH . J 8 HOH P 3 11 11 HOH HOH . J 8 HOH P 4 15 15 HOH HOH . J 8 HOH P 5 17 17 HOH HOH . J 8 HOH P 6 20 20 HOH HOH . J 8 HOH P 7 23 23 HOH HOH . J 8 HOH P 8 36 36 HOH HOH . J 8 HOH P 9 37 37 HOH HOH . J 8 HOH P 10 60 60 HOH HOH . J 8 HOH P 11 69 69 HOH HOH . J 8 HOH P 12 72 72 HOH HOH . J 8 HOH P 13 74 74 HOH HOH . J 8 HOH P 14 95 95 HOH HOH . J 8 HOH P 15 101 101 HOH HOH . J 8 HOH P 16 106 106 HOH HOH . J 8 HOH P 17 116 116 HOH HOH . J 8 HOH P 18 120 120 HOH HOH . J 8 HOH P 19 134 134 HOH HOH . J 8 HOH P 20 147 147 HOH HOH . J 8 HOH P 21 150 150 HOH HOH . K 8 HOH D 1 108 108 HOH HOH . K 8 HOH D 2 131 131 HOH HOH . K 8 HOH D 3 162 162 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 6 _atom_site.Cartn_x 19.138 _atom_site.Cartn_y 25.819 _atom_site.Cartn_z 13.519 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.81 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 577 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #