data_3MH5
#
_model_server_result.job_id            aYip86x-8umd0wEASkEUkA 
_model_server_result.datetime_utc      '2025-02-05 14:01:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3mh5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":500}' 
#
_entry.id    3MH5 
#
_exptl.entry_id    3MH5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              166.155 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIISOPROPYL PHOSPHONATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3MH5 
_cell.length_a            121.453 
_cell.length_b            121.453 
_cell.length_c            226.648 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3MH5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? hexameric 6 author_defined_assembly 1 
PISA hexameric 6 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1,2,3,4,5,6 
B,D,F 2 1,7,8,9,10,11 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 121.453 0 0 
3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 60.7265 105.181383 0 
4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 60.7265 105.181383 113.324 
5 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 121.453 0 113.324 
6 'crystal symmetry operation' 12_555 x,x-y,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 113.324 
7 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
8 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
9 'crystal symmetry operation' 7_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
10 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
11 'crystal symmetry operation' 9_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 210 A SER 210 1_555 C P DFP . A DFP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.566 ? 
covale ? covale2 B OG SER 210 B SER 210 1_555 D P DFP . B DFP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.565 ? 
#
_chem_comp.formula           'C6 H15 O3 P' 
_chem_comp.formula_weight    166.155 
_chem_comp.id                DFP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIISOPROPYL PHOSPHONATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 DFP sing 83 n n 
C1 C3 DFP sing 84 n n 
C1 O1P DFP sing 85 n n 
C1 H1 DFP sing 86 n n 
C2 H21 DFP sing 87 n n 
C2 H22 DFP sing 88 n n 
C2 H23 DFP sing 89 n n 
C3 H31 DFP sing 90 n n 
C3 H32 DFP sing 91 n n 
C3 H33 DFP sing 92 n n 
C1' C2' DFP sing 93 n n 
C1' C3' DFP sing 94 n n 
C1' O2P DFP sing 95 n n 
C1' H1' DFP sing 96 n n 
C2' "H2'1" DFP sing 97 n n 
C2' "H2'2" DFP sing 98 n n 
C2' "H2'3" DFP sing 99 n n 
C3' "H3'1" DFP sing 100 n n 
C3' "H3'2" DFP sing 101 n n 
C3' "H3'3" DFP sing 102 n n 
P O1P DFP sing 103 n n 
P O2P DFP sing 104 n n 
P O3P DFP doub 105 n n 
HP1 P DFP sing 106 n n 
#
_atom_sites.entry_id                     3MH5 
_atom_sites.fract_transf_matrix[1][1]    0.008234 
_atom_sites.fract_transf_matrix[1][2]    0.004754 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009507 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004412 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DFP A 1 500 500 DFP DFP . 
D 2 DFP B 1 500 500 DFP DFP . 
E 3 HOH A 1 457 2 HOH HOH . 
E 3 HOH A 2 458 5 HOH HOH . 
F 3 HOH B 1 457 1 HOH HOH . 
F 3 HOH B 2 458 3 HOH HOH . 
F 3 HOH B 3 459 4 HOH HOH . 
F 3 HOH B 4 460 6 HOH HOH . 
F 3 HOH B 5 461 7 HOH HOH . 
F 3 HOH B 6 462 8 HOH HOH . 
F 3 HOH B 7 463 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DFP . . . D 2 11.378 -0.258 25.742 1 115.79 ? C1 DFP 500 B 1 
HETATM 2 C C2 DFP . . . D 2 11.367 -0.765 27.206 1 113.32 ? C2 DFP 500 B 1 
HETATM 3 C C3 DFP . . . D 2 11.856 1.227 25.586 1 115.28 ? C3 DFP 500 B 1 
HETATM 4 C C1' DFP . . . D 2 9.363 1.431 22.288 1 121.13 ? C1' DFP 500 B 1 
HETATM 5 C C2' DFP . . . D 2 8.795 2.721 22.933 1 120.82 ? C2' DFP 500 B 1 
HETATM 6 C C3' DFP . . . D 2 8.936 1.285 20.829 1 119.84 ? C3' DFP 500 B 1 
HETATM 7 P P DFP . . . D 2 9.732 -0.86 23.755 1 118.2 ? P DFP 500 B 1 
HETATM 8 O O1P DFP . . . D 2 10.037 -0.41 25.253 1 117.95 ? O1P DFP 500 B 1 
HETATM 9 O O2P DFP . . . D 2 8.868 0.301 23.031 1 120.33 ? O2P DFP 500 B 1 
HETATM 10 O O3P DFP . . . D 2 8.95 -2.163 23.776 1 119.33 ? O3P DFP 500 B 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#