data_3MHK # _model_server_result.job_id aK0am3iBrIuIzp9ijvqisQ _model_server_result.datetime_utc '2024-11-24 18:36:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mhk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2}' # _entry.id 3MHK # _exptl.entry_id 3MHK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 245.3 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-pyridin-2-yl-7,8-dihydro-5H-thiopyrano[4,3-d]pyrimidin-4-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3MHK _cell.length_a 92.484 _cell.length_b 92.484 _cell.length_c 53.506 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MHK _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B ZN ZN . A ZN 1 1_555 A SG CYS 131 A CYS 1081 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc2 B ZN ZN . A ZN 1 1_555 A ND1 HIS 134 A HIS 1084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc3 B ZN ZN . A ZN 1 1_555 A SG CYS 139 A CYS 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc4 B ZN ZN . A ZN 1 1_555 A SG CYS 142 A CYS 1092 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? # _chem_comp.formula 'C12 H11 N3 O S' _chem_comp.formula_weight 245.3 _chem_comp.id P4L _chem_comp.mon_nstd_flag . _chem_comp.name 2-pyridin-2-yl-7,8-dihydro-5H-thiopyrano[4,3-d]pyrimidin-4-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 P4L doub 250 n y N1 C6 P4L sing 251 n y C2 N3 P4L sing 252 n y C2 CAN P4L sing 253 n y N3 C4 P4L doub 254 n y C4 C5 P4L sing 255 n y C4 CAG P4L sing 256 n n C5 C6 P4L doub 257 n y C5 CAH P4L sing 258 n n C6 O6 P4L sing 259 n n CAB CAC P4L doub 260 n y CAB CAD P4L sing 261 n y CAC CAE P4L sing 262 n y CAD NAI P4L doub 263 n y CAE CAN P4L doub 264 n y CAF CAG P4L sing 265 n n CAF SAL P4L sing 266 n n CAH SAL P4L sing 267 n n NAI CAN P4L sing 268 n y O6 HO6 P4L sing 269 n n CAB HAB P4L sing 270 n n CAC HAC P4L sing 271 n n CAD HAD P4L sing 272 n n CAE HAE P4L sing 273 n n CAF HAF P4L sing 274 n n CAF HAFA P4L sing 275 n n CAG HAG P4L sing 276 n n CAG HAGA P4L sing 277 n n CAH HAH P4L sing 278 n n CAH HAHA P4L sing 279 n n # _atom_sites.entry_id 3MHK _atom_sites.fract_transf_matrix[1][1] 0.010813 _atom_sites.fract_transf_matrix[1][2] 0.006243 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012485 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018689 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1 1 ZN ZN . C 3 P4L A 1 2 1 P4L DRG . D 4 GOL A 1 3 10 GOL GOL . E 4 GOL A 1 4 11 GOL GOL . F 4 GOL A 1 5 12 GOL GOL . G 5 HOH A 1 6 6 HOH HOH . G 5 HOH A 2 7 7 HOH HOH . G 5 HOH A 3 8 8 HOH HOH . G 5 HOH A 4 9 9 HOH HOH . G 5 HOH A 5 10 10 HOH HOH . G 5 HOH A 6 11 11 HOH HOH . G 5 HOH A 7 12 12 HOH HOH . G 5 HOH A 8 13 13 HOH HOH . G 5 HOH A 9 14 14 HOH HOH . G 5 HOH A 10 15 15 HOH HOH . G 5 HOH A 11 16 16 HOH HOH . G 5 HOH A 12 17 17 HOH HOH . G 5 HOH A 13 18 18 HOH HOH . G 5 HOH A 14 19 19 HOH HOH . G 5 HOH A 15 20 20 HOH HOH . G 5 HOH A 16 21 21 HOH HOH . G 5 HOH A 17 22 22 HOH HOH . G 5 HOH A 18 23 23 HOH HOH . G 5 HOH A 19 24 24 HOH HOH . G 5 HOH A 20 25 25 HOH HOH . G 5 HOH A 21 26 26 HOH HOH . G 5 HOH A 22 27 27 HOH HOH . G 5 HOH A 23 28 28 HOH HOH . G 5 HOH A 24 29 29 HOH HOH . G 5 HOH A 25 31 31 HOH HOH . G 5 HOH A 26 32 32 HOH HOH . G 5 HOH A 27 33 33 HOH HOH . G 5 HOH A 28 34 34 HOH HOH . G 5 HOH A 29 35 35 HOH HOH . G 5 HOH A 30 36 36 HOH HOH . G 5 HOH A 31 37 37 HOH HOH . G 5 HOH A 32 38 38 HOH HOH . G 5 HOH A 33 39 39 HOH HOH . G 5 HOH A 34 40 40 HOH HOH . G 5 HOH A 35 41 41 HOH HOH . G 5 HOH A 36 42 42 HOH HOH . G 5 HOH A 37 43 43 HOH HOH . G 5 HOH A 38 44 44 HOH HOH . G 5 HOH A 39 45 45 HOH HOH . G 5 HOH A 40 46 46 HOH HOH . G 5 HOH A 41 47 47 HOH HOH . G 5 HOH A 42 48 48 HOH HOH . G 5 HOH A 43 49 49 HOH HOH . G 5 HOH A 44 50 50 HOH HOH . G 5 HOH A 45 51 51 HOH HOH . G 5 HOH A 46 52 52 HOH HOH . G 5 HOH A 47 53 53 HOH HOH . G 5 HOH A 48 54 54 HOH HOH . G 5 HOH A 49 55 55 HOH HOH . G 5 HOH A 50 56 56 HOH HOH . G 5 HOH A 51 57 57 HOH HOH . G 5 HOH A 52 58 58 HOH HOH . G 5 HOH A 53 59 59 HOH HOH . G 5 HOH A 54 60 60 HOH HOH . G 5 HOH A 55 61 61 HOH HOH . G 5 HOH A 56 62 62 HOH HOH . G 5 HOH A 57 63 63 HOH HOH . G 5 HOH A 58 64 64 HOH HOH . G 5 HOH A 59 65 65 HOH HOH . G 5 HOH A 60 66 66 HOH HOH . G 5 HOH A 61 67 67 HOH HOH . G 5 HOH A 62 68 68 HOH HOH . G 5 HOH A 63 69 69 HOH HOH . G 5 HOH A 64 70 70 HOH HOH . G 5 HOH A 65 71 71 HOH HOH . G 5 HOH A 66 1174 1 HOH HOH . G 5 HOH A 67 1175 2 HOH HOH . G 5 HOH A 68 1176 3 HOH HOH . G 5 HOH A 69 1177 4 HOH HOH . G 5 HOH A 70 1178 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 P4L . . . C 3 -30.07 13.163 -2.693 1 14.33 ? N1 P4L 2 A 1 HETATM 2 C C2 P4L . . . C 3 -30.929 12.192 -2.403 1 14.45 ? C2 P4L 2 A 1 HETATM 3 N N3 P4L . . . C 3 -32.221 12.477 -2.316 1 14.91 ? N3 P4L 2 A 1 HETATM 4 C C4 P4L . . . C 3 -32.715 13.715 -2.518 1 15.99 ? C4 P4L 2 A 1 HETATM 5 C C5 P4L . . . C 3 -31.833 14.749 -2.847 1 15.86 ? C5 P4L 2 A 1 HETATM 6 C C6 P4L . . . C 3 -30.489 14.405 -2.901 1 14.57 ? C6 P4L 2 A 1 HETATM 7 O O6 P4L . . . C 3 -29.564 15.331 -3.155 1 14.45 ? O6 P4L 2 A 1 HETATM 8 C CAB P4L . . . C 3 -29.422 8.347 -1.935 1 18.34 ? CAB P4L 2 A 1 HETATM 9 C CAC P4L . . . C 3 -30.733 8.6 -1.563 1 18.39 ? CAC P4L 2 A 1 HETATM 10 C CAD P4L . . . C 3 -28.687 9.406 -2.464 1 19.9 ? CAD P4L 2 A 1 HETATM 11 C CAE P4L . . . C 3 -31.254 9.879 -1.712 1 16.82 ? CAE P4L 2 A 1 HETATM 12 C CAF P4L . . . C 3 -34.726 15.251 -2.349 1 17.59 ? CAF P4L 2 A 1 HETATM 13 C CAG P4L . . . C 3 -34.227 13.821 -2.394 1 15.77 ? CAG P4L 2 A 1 HETATM 14 C CAH P4L . . . C 3 -32.263 16.174 -3.093 1 14.93 ? CAH P4L 2 A 1 HETATM 15 N NAI P4L . . . C 3 -29.21 10.62 -2.596 1 18.8 ? NAI P4L 2 A 1 HETATM 16 S SAL P4L . . . C 3 -33.977 16.24 -3.669 1 15.11 ? SAL P4L 2 A 1 HETATM 17 C CAN P4L . . . C 3 -30.459 10.897 -2.214 1 16.1 ? CAN P4L 2 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 17 #